Wall clock time and date at job start Tue Mar 31 2020 19:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35728 * 116.99809 * 2 1 4 4 C 1.39320 * 120.17760 * 90.00094 * 3 2 1 5 5 N 1.40181 * 120.01698 * 359.97438 * 4 3 2 6 6 C 1.34777 * 119.99869 * 214.08907 * 5 4 3 7 7 O 1.21594 * 119.99739 * 5.80618 * 6 5 4 8 8 N 1.34777 * 120.00156 * 185.80321 * 6 5 4 9 9 C 1.47571 * 134.49427 * 180.02562 * 8 6 5 10 10 C 1.53937 * 86.12081 * 155.35521 * 9 8 6 11 11 O 1.42898 * 113.74493 * 269.15219 * 10 9 8 12 12 C 1.50702 * 113.74326 * 137.94703 * 10 9 8 13 13 H 1.08002 * 120.00297 * 6.32440 * 12 10 9 14 14 C 1.37881 * 120.00008 * 186.32272 * 12 10 9 15 15 N 1.31514 * 119.99933 * 184.82091 * 14 12 10 16 16 Si 1.86802 * 120.00048 * 4.81916 * 14 12 10 17 17 H 1.48496 * 109.47196 * 270.00110 * 16 14 12 18 18 H 1.48498 * 109.46895 * 30.00082 * 16 14 12 19 19 H 1.48502 * 109.46950 * 150.00144 * 16 14 12 20 20 C 1.47812 * 134.45578 * 359.86498 * 8 6 5 21 21 C 1.38568 * 119.96005 * 180.25299 * 4 3 2 22 22 C 1.38507 * 120.32262 * 359.44590 * 21 4 3 23 23 C 1.37762 * 120.35987 * 0.55432 * 22 21 4 24 24 C 1.39811 * 120.03121 * 359.72577 * 23 22 21 25 25 C 1.47540 * 120.15979 * 179.97438 * 24 23 22 26 26 N 1.34777 * 120.00047 * 0.02562 * 25 24 23 27 27 O 1.21591 * 120.00239 * 180.02562 * 25 24 23 28 28 H 1.08993 * 109.47099 * 299.99891 * 1 2 3 29 29 H 1.09006 * 109.46820 * 60.00024 * 1 2 3 30 30 H 1.08993 * 109.47048 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00286 * 34.08454 * 5 4 3 32 32 H 1.08997 * 113.77110 * 41.05171 * 9 8 6 33 33 H 1.09009 * 113.77081 * 269.65809 * 9 8 6 34 34 H 0.96703 * 113.99986 * 173.01240 * 11 10 9 35 35 H 0.97002 * 120.00050 * 354.99630 * 15 14 12 36 36 H 1.09002 * 113.76957 * 90.37939 * 20 8 6 37 37 H 1.09000 * 113.83539 * 318.92222 * 20 8 6 38 38 H 1.08001 * 119.83781 * 179.70635 * 21 4 3 39 39 H 1.08002 * 119.81759 * 180.26022 * 22 21 4 40 40 H 1.08001 * 119.98451 * 179.74263 * 23 22 21 41 41 H 0.97001 * 120.00237 * 359.97438 * 26 25 24 42 42 H 0.97000 * 119.99907 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 2.3631 1.8334 1.2044 5 7 2.0463 1.2128 2.4208 6 6 1.6922 1.9589 3.4858 7 8 1.5449 3.1598 3.3648 8 7 1.5015 1.3740 4.6850 9 6 1.1213 1.8618 6.0248 10 6 0.6066 0.4343 6.2838 11 8 -0.7678 0.2470 5.9404 12 6 0.9472 -0.0944 7.6533 13 1 1.4131 0.5528 8.3816 14 6 0.6642 -1.4046 7.9765 15 7 0.8736 -1.8401 9.1996 16 14 -0.0169 -2.5610 6.6771 17 1 -1.5005 -2.4984 6.6873 18 1 0.4866 -2.1549 5.3404 19 1 0.4220 -3.9490 6.9707 20 6 1.5864 -0.0145 5.1847 21 6 2.9874 3.0704 1.1991 22 6 3.3084 3.6867 0.0009 23 6 3.0001 3.0816 -1.1977 24 6 2.3650 1.8361 -1.2099 25 6 2.0331 1.1858 -2.4919 26 7 2.3426 1.7921 -3.6551 27 8 1.4803 0.1028 -2.4992 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 2.0819 0.2463 2.4959 32 1 0.3350 2.6165 6.0109 33 1 1.9708 2.1423 6.6477 34 1 -1.0667 -0.6707 6.0001 35 1 1.2943 -1.2618 9.8550 36 1 2.5729 -0.2868 5.5600 37 1 1.1707 -0.7548 4.5012 38 1 3.2287 3.5545 2.1339 39 1 3.7987 4.6489 0.0064 40 1 3.2494 3.5694 -2.1284 41 1 2.7832 2.6563 -3.6494 42 1 2.1240 1.3647 -4.4980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647280370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:47 Heat of formation + Delta-G solvation = -92.338982 kcal Electronic energy + Delta-G solvation = -29273.636511 eV Core-core repulsion = 25027.345564 eV Total energy + Delta-G solvation = -4246.290947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17478 -41.32470 -40.10143 -39.24126 -38.22806 -36.17741 -35.85348 -34.66266 -34.62701 -31.70431 -31.27458 -29.71855 -27.91611 -27.36683 -26.72068 -25.30218 -23.34361 -22.55176 -21.58986 -20.69638 -20.05292 -19.67129 -19.11933 -18.48597 -18.04238 -17.72940 -17.27711 -17.01863 -16.74051 -16.69312 -16.29153 -15.97752 -15.70418 -15.54919 -15.18749 -14.97957 -14.90492 -14.65428 -14.50459 -14.03719 -13.92229 -13.60494 -13.24908 -13.18593 -13.05900 -12.56914 -12.55919 -12.10653 -11.76655 -11.67054 -11.51820 -11.29309 -11.23375 -10.98250 -10.84759 -10.64538 -10.45740 -9.92243 -9.81391 -9.16047 -8.81881 -6.60539 -0.33228 0.05362 1.21758 1.40974 1.46075 1.61344 1.72490 2.00654 2.39574 2.42310 2.47133 2.66951 2.86012 2.94222 3.31201 3.76411 3.77452 3.87164 4.03418 4.09675 4.25372 4.30360 4.32329 4.34650 4.39337 4.48181 4.55283 4.60032 4.67601 4.70000 4.89417 4.99417 5.08364 5.24450 5.37265 5.54554 5.66772 5.90234 5.90435 5.97521 6.37991 6.38587 6.45145 6.73877 6.80077 7.23900 7.29331 7.32656 8.53279 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003155 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.161894 B = 8872.872466 C = 9902.181101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.333 6.333 3 C 0.103 3.897 4 C 0.128 3.872 5 N -0.674 5.674 6 C 0.724 3.276 7 O -0.614 6.614 8 N -0.649 5.649 9 C 0.149 3.851 10 C 0.189 3.811 11 O -0.563 6.563 12 C -0.611 4.611 13 H 0.040 0.960 14 C -0.012 4.012 15 N -0.926 5.926 16 Si 1.062 2.938 17 H -0.258 1.258 18 H -0.226 1.226 19 H -0.285 1.285 20 C 0.071 3.929 21 C -0.099 4.099 22 C -0.101 4.101 23 C -0.074 4.074 24 C -0.157 4.157 25 C 0.561 3.439 26 N -0.827 5.827 27 O -0.566 6.566 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.108 0.892 31 H 0.415 0.585 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.363 0.637 35 H 0.259 0.741 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.171 0.829 40 H 0.180 0.820 41 H 0.417 0.583 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.574 8.144 -25.928 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.249 6.249 3 C 0.055 3.945 4 C 0.032 3.968 5 N -0.321 5.321 6 C 0.428 3.572 7 O -0.495 6.495 8 N -0.386 5.386 9 C 0.026 3.974 10 C 0.148 3.852 11 O -0.373 6.373 12 C -0.649 4.649 13 H 0.058 0.942 14 C -0.212 4.212 15 N -0.560 5.560 16 Si 0.883 3.117 17 H -0.184 1.184 18 H -0.150 1.150 19 H -0.211 1.211 20 C -0.051 4.051 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.093 4.093 24 C -0.161 4.161 25 C 0.346 3.654 26 N -0.393 5.393 27 O -0.446 6.446 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.214 0.786 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.145 0.855 39 H 0.189 0.811 40 H 0.198 0.802 41 H 0.250 0.750 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.697 7.348 -26.263 27.673 hybrid contribution 0.543 0.796 1.250 1.579 sum 5.240 8.145 -25.012 26.822 Atomic orbital electron populations 1.22893 0.77638 1.04101 0.99531 1.85928 1.20930 1.24001 1.94041 1.18607 0.97852 0.87585 0.90439 1.18022 1.00030 0.95094 0.83647 1.42379 1.70962 1.10612 1.08179 1.15463 0.77583 0.84319 0.79802 1.90852 1.60575 1.13754 1.84296 1.49219 1.71049 1.11858 1.06507 1.23123 0.98326 0.97141 0.78780 1.20471 0.79452 0.93563 0.91730 1.86433 1.27607 1.31838 1.91380 1.22357 1.45158 0.98483 0.98934 0.94189 1.27242 0.94587 0.98932 1.00446 1.70905 1.40184 1.40997 1.03905 0.84001 0.77903 0.74984 0.74822 1.18374 1.14965 1.21146 1.24677 1.01996 0.83034 0.95440 1.21444 0.95902 0.93766 1.00850 1.21376 0.99176 1.01292 0.90120 1.21608 0.95521 0.91768 1.00386 1.20217 1.06482 0.97358 0.92038 1.18085 0.78052 0.84354 0.84872 1.43510 1.63183 1.25390 1.07206 1.90848 1.43399 1.22289 1.88050 0.94845 0.93707 0.87341 0.74771 0.91163 0.88353 0.78571 0.93168 0.88046 0.89007 0.85478 0.81143 0.80244 0.75003 0.75366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.38 10.49 113.37 1.19 2.56 16 2 O -0.33 -9.91 8.39 -69.56 -0.58 -10.50 16 3 C 0.10 2.84 5.75 22.95 0.13 2.97 16 4 C 0.13 3.70 6.28 38.14 0.24 3.94 16 5 N -0.67 -21.30 5.20 -316.86 -1.65 -22.95 16 6 C 0.72 27.23 8.48 179.05 1.52 28.75 16 7 O -0.61 -25.90 14.81 -4.01 -0.06 -25.96 16 8 N -0.65 -24.71 3.61 -857.85 -3.10 -27.81 16 9 C 0.15 6.06 8.23 86.48 0.71 6.77 16 10 C 0.19 8.21 1.06 -10.89 -0.01 8.19 16 11 O -0.56 -24.67 13.43 -148.98 -2.00 -26.67 16 12 C -0.61 -31.27 9.04 25.60 0.23 -31.04 16 13 H 0.04 2.24 8.04 -2.91 -0.02 2.22 16 14 C -0.01 -0.60 5.47 84.66 0.46 -0.14 16 15 N -0.93 -53.36 13.70 21.45 0.29 -53.06 16 16 Si 1.06 42.22 24.84 68.60 1.70 43.92 16 17 H -0.26 -9.53 6.95 99.48 0.69 -8.84 16 18 H -0.23 -7.41 4.66 99.48 0.46 -6.95 16 19 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.07 2.60 6.48 86.43 0.56 3.16 16 21 C -0.10 -2.52 8.65 22.41 0.19 -2.32 16 22 C -0.10 -1.62 10.02 22.22 0.22 -1.40 16 23 C -0.07 -0.97 9.53 22.54 0.21 -0.76 16 24 C -0.16 -3.31 5.88 -20.03 -0.12 -3.43 16 25 C 0.56 11.58 8.04 86.70 0.70 12.27 16 26 N -0.83 -7.64 8.82 -175.81 -1.55 -9.19 16 27 O -0.57 -16.67 14.84 16.94 0.25 -16.42 16 28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 1.17 7.50 -2.38 -0.02 1.15 16 30 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.42 12.13 8.18 -92.70 -0.76 11.37 16 32 H 0.07 2.90 8.14 -2.39 -0.02 2.89 16 33 H 0.10 3.80 8.09 -2.38 -0.02 3.78 16 34 H 0.36 14.45 4.50 -74.06 -0.33 14.11 16 35 H 0.26 15.17 8.72 -92.71 -0.81 14.36 16 36 H 0.10 3.58 8.09 -2.39 -0.02 3.56 16 37 H 0.09 3.02 6.40 -2.39 -0.02 3.00 16 38 H 0.13 3.72 6.45 -2.91 -0.02 3.70 16 39 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.18 0.47 6.40 -2.91 -0.02 0.46 16 41 H 0.42 0.77 6.86 -92.71 -0.64 0.13 16 42 H 0.41 2.83 8.93 -92.71 -0.83 2.01 16 Total: -1.00 -76.14 350.39 -2.16 -78.30 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -1.72 Total: 40.80 kcal Atomic # 6 Polarization: 23.29 SS G_CDS: 6.24 Total: 29.53 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -6.00 Total: -113.01 kcal Atomic # 8 Polarization: -77.15 SS G_CDS: -2.39 Total: -79.55 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.70 Total: 43.92 kcal Total: -76.14 -2.16 -78.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647280370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.037 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds