Wall clock time and date at job start Tue Mar 31 2020 19:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35998 * 117.00444 * 2 1 4 4 C 1.39191 * 120.07371 * 270.02278 * 3 2 1 5 5 O 1.36000 * 120.07140 * 359.95381 * 4 3 2 6 6 C 1.38528 * 119.85657 * 179.72070 * 4 3 2 7 7 C 1.38279 * 119.99415 * 0.50975 * 6 4 3 8 8 C 1.38212 * 120.14969 * 359.48656 * 7 6 4 9 9 C 1.50699 * 119.92806 * 180.27875 * 8 7 6 10 10 N 1.46909 * 109.47026 * 106.23277 * 9 8 7 11 11 C 1.46897 * 110.99651 * 166.66358 * 10 9 8 12 12 C 1.50702 * 109.46859 * 195.22573 * 11 10 9 13 13 H 1.07996 * 120.00232 * 4.93118 * 12 11 10 14 14 C 1.37884 * 120.00125 * 184.92761 * 12 11 10 15 15 N 1.31518 * 119.99694 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00103 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47120 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46930 * 120.00101 * 16 14 12 19 19 H 1.48498 * 109.47282 * 240.00322 * 16 14 12 20 20 C 1.46898 * 110.99825 * 290.61846 * 10 9 8 21 21 C 1.53002 * 109.47377 * 299.15538 * 20 10 9 22 22 C 1.47195 * 109.47153 * 182.52493 * 21 20 10 23 23 N 8.63726 * 91.23189 * 7.01669 * 2 1 3 24 24 C 1.38281 * 120.14412 * 0.25529 * 8 7 6 25 25 N 1.48021 * 119.99920 * 180.02562 * 24 8 7 26 26 O 1.21800 * 119.99906 * 92.78610 * 25 24 8 27 27 O 1.21799 * 120.00059 * 272.78799 * 25 24 8 28 28 H 1.09004 * 109.47292 * 300.00290 * 1 2 3 29 29 H 1.09007 * 109.46954 * 60.00004 * 1 2 3 30 30 H 1.08997 * 109.47615 * 179.97438 * 1 2 3 31 31 H 0.96707 * 113.99755 * 90.00334 * 5 4 3 32 32 H 1.07997 * 119.99857 * 180.25135 * 6 4 3 33 33 H 1.08005 * 119.92572 * 179.77102 * 7 6 4 34 34 H 1.08998 * 109.47224 * 226.23385 * 9 8 7 35 35 H 1.08999 * 109.47191 * 346.23996 * 9 8 7 36 36 H 1.09001 * 109.47753 * 315.22493 * 11 10 9 37 37 H 1.09000 * 109.47388 * 75.23194 * 11 10 9 38 38 H 0.96991 * 119.99750 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.47730 * 59.16088 * 20 10 9 40 40 H 1.09006 * 109.46563 * 179.15584 * 20 10 9 41 41 H 1.09003 * 109.47124 * 302.52460 * 21 20 10 42 42 H 1.08995 * 109.46660 * 62.52154 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3627 1.8334 -1.2045 5 8 2.0557 1.2300 -2.3840 6 6 2.9865 3.0703 -1.1993 7 6 3.3030 3.6797 0.0009 8 6 2.9890 3.0625 1.1970 9 6 3.3306 3.7341 2.5021 10 7 2.1043 4.2565 3.1197 11 6 2.3391 4.6322 4.5203 12 6 1.0170 4.8033 5.2229 13 1 0.0971 4.5716 4.7066 14 6 0.9816 5.2556 6.5249 15 7 2.1017 5.5382 7.1535 16 14 -0.6573 5.4684 7.3956 17 1 -1.7593 5.0859 6.4766 18 1 -0.6942 4.6006 8.6001 19 1 -0.8213 6.8871 7.8023 20 6 1.5704 5.3901 2.3529 21 6 2.6036 6.5182 2.3242 22 6 2.0454 7.6766 1.6078 23 7 1.6146 8.5706 1.0549 24 6 2.3615 1.8302 1.1987 25 7 2.0261 1.1724 2.4816 26 8 0.9291 1.3402 2.9835 27 8 2.8471 0.4632 3.0353 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.1796 1.4561 -2.7252 32 1 3.2293 3.5565 -2.1325 33 1 3.7927 4.6424 0.0037 34 1 3.7953 3.0109 3.1722 35 1 4.0228 4.5556 2.3177 36 1 2.9148 3.8497 5.0148 37 1 2.8940 5.5697 4.5569 38 1 2.0768 5.8567 8.0693 39 1 1.3539 5.0697 1.3339 40 1 0.6546 5.7479 2.8236 41 1 2.8534 6.8082 3.3449 42 1 3.5030 6.1742 1.8138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657593448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:43 Heat of formation + Delta-G solvation = -34.182363 kcal Electronic energy + Delta-G solvation = -29902.240628 eV Core-core repulsion = 25658.471541 eV Total energy + Delta-G solvation = -4243.769087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.20573 -41.48944 -39.85212 -38.75860 -37.92072 -37.40996 -37.18528 -34.70576 -32.92146 -32.20463 -31.47746 -29.09867 -28.22194 -27.37761 -26.50109 -25.23873 -23.59277 -23.17519 -21.50234 -20.56032 -19.66982 -19.29600 -18.98704 -18.61925 -18.33819 -18.02703 -17.16453 -17.03942 -16.88197 -16.42535 -16.06666 -15.86649 -15.52840 -15.35526 -15.18225 -14.83639 -14.30395 -14.09073 -13.73977 -13.61285 -13.44989 -13.41171 -13.01046 -12.97060 -12.92487 -12.67193 -12.61368 -12.57926 -12.46320 -12.35276 -12.13244 -11.99146 -11.95903 -11.52339 -11.31511 -11.19253 -10.53675 -10.46143 -9.89723 -9.05236 -8.13714 -6.19271 -0.55042 -0.48384 -0.32513 0.45433 1.42204 1.46304 1.56740 1.78228 1.82096 1.90118 2.30800 2.45560 2.83486 2.94687 3.20783 3.26768 3.45663 3.60308 3.80869 3.89072 4.00571 4.12754 4.17112 4.21658 4.27257 4.36786 4.40718 4.59985 4.63231 4.65171 4.80299 4.88599 4.95682 5.12084 5.18398 5.32597 5.34543 5.36437 5.73227 5.91512 6.09754 6.26048 6.50025 6.53040 6.62077 6.62129 6.95433 7.49195 8.96131 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011029 B = 0.004458 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.241059 B = 6278.805783 C = 7797.097649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.351 6.351 3 C 0.092 3.908 4 C 0.105 3.895 5 O -0.482 6.482 6 C -0.076 4.076 7 C -0.080 4.080 8 C -0.029 4.029 9 C 0.064 3.936 10 N -0.533 5.533 11 C 0.205 3.795 12 C -0.508 4.508 13 H 0.058 0.942 14 C 0.011 3.989 15 N -0.929 5.929 16 Si 0.950 3.050 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.281 1.281 20 C 0.075 3.925 21 C -0.063 4.063 22 C 0.246 3.754 23 N -0.491 5.491 24 C -0.033 4.033 25 N 0.035 4.965 26 O -0.127 6.127 27 O -0.192 6.192 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.414 0.586 32 H 0.193 0.807 33 H 0.191 0.809 34 H 0.060 0.940 35 H 0.099 0.901 36 H -0.007 1.007 37 H 0.008 0.992 38 H 0.262 0.738 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -4.742 -21.606 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.046 3.954 4 C 0.058 3.942 5 O -0.295 6.295 6 C -0.094 4.094 7 C -0.099 4.099 8 C -0.031 4.031 9 C -0.064 4.064 10 N -0.255 5.255 11 C 0.080 3.920 12 C -0.547 4.547 13 H 0.076 0.924 14 C -0.187 4.187 15 N -0.570 5.570 16 Si 0.776 3.224 17 H -0.191 1.191 18 H -0.212 1.212 19 H -0.207 1.207 20 C -0.055 4.055 21 C -0.105 4.105 22 C -0.071 4.071 23 N -0.170 5.170 24 C -0.115 4.115 25 N 0.563 4.437 26 O -0.359 6.359 27 O -0.405 6.405 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.275 0.725 32 H 0.210 0.790 33 H 0.208 0.792 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.012 0.988 37 H 0.026 0.974 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.892 -3.872 -22.880 23.282 hybrid contribution -0.824 0.108 2.030 2.194 sum 1.068 -3.764 -20.850 21.214 Atomic orbital electron populations 1.23402 0.75824 1.05654 1.02084 1.86113 1.22677 1.23683 1.94347 1.18886 0.98527 0.87661 0.90285 1.18429 1.00319 0.91691 0.83724 1.84896 1.41199 1.70670 1.32775 1.22047 0.94641 0.91710 1.01003 1.21465 0.98552 1.01577 0.88299 1.19746 0.95203 0.89954 0.98217 1.21369 0.93458 0.99950 0.91597 1.62268 1.27093 1.32745 1.03418 1.19496 0.95826 0.93887 0.82785 1.21400 0.93693 1.42036 0.97521 0.92405 1.25626 0.99215 0.95633 0.98260 1.70030 1.27659 1.46888 1.12460 0.85617 0.80808 0.77400 0.78535 1.19143 1.21160 1.20686 1.22017 0.97168 0.87503 0.98821 1.20178 1.01271 0.88307 1.00696 1.29216 0.92165 0.93661 0.92046 1.81200 1.10767 1.12591 1.12410 1.21301 1.11094 0.97257 0.81810 1.43600 0.99788 0.98157 1.02158 1.94578 1.09724 1.64530 1.67028 1.94511 1.45304 1.36140 1.64550 0.94081 0.90121 0.86333 0.72534 0.79033 0.79193 0.92190 0.88376 0.98848 0.97402 0.92954 0.89094 0.91364 0.87571 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.13 113.37 1.26 1.71 16 2 O -0.35 -9.30 9.96 -79.68 -0.79 -10.09 16 3 C 0.09 2.28 5.74 22.57 0.13 2.41 16 4 C 0.11 1.73 6.72 22.57 0.15 1.88 16 5 O -0.48 -6.18 13.29 -79.71 -1.06 -7.24 16 6 C -0.08 -0.81 9.98 22.35 0.22 -0.58 16 7 C -0.08 -1.04 9.21 22.27 0.21 -0.83 16 8 C -0.03 -0.68 4.53 -19.86 -0.09 -0.77 16 9 C 0.06 1.77 4.47 85.56 0.38 2.15 16 10 N -0.53 -18.65 4.63 -905.35 -4.19 -22.84 16 11 C 0.21 9.42 4.60 85.56 0.39 9.82 16 12 C -0.51 -26.72 8.47 25.60 0.22 -26.51 16 13 H 0.06 3.09 7.63 -2.91 -0.02 3.07 16 14 C 0.01 0.59 5.46 84.66 0.46 1.06 16 15 N -0.93 -53.03 13.29 21.45 0.28 -52.74 16 16 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 C 0.07 2.11 5.01 86.30 0.43 2.54 16 21 C -0.06 -1.43 5.06 28.79 0.15 -1.28 16 22 C 0.25 6.36 15.43 89.44 1.38 7.74 16 23 N -0.49 -15.13 18.54 20.00 0.37 -14.76 16 24 C -0.03 -0.97 6.13 36.45 0.22 -0.75 16 25 N 0.04 1.35 3.35 -46.27 -0.16 1.19 16 26 O -0.13 -5.33 18.73 18.89 0.35 -4.97 16 27 O -0.19 -7.98 19.25 18.89 0.36 -7.62 16 28 H 0.04 0.97 7.61 -2.38 -0.02 0.95 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.41 1.15 9.07 -74.05 -0.67 0.48 16 32 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.19 0.97 7.94 -2.91 -0.02 0.94 16 34 H 0.06 2.05 7.64 -2.39 -0.02 2.03 16 35 H 0.10 1.93 5.73 -2.39 -0.01 1.92 16 36 H -0.01 -0.35 7.78 -2.39 -0.02 -0.37 16 37 H 0.01 0.38 5.86 -2.39 -0.01 0.37 16 38 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.09 2.06 7.02 -2.39 -0.02 2.04 16 40 H 0.07 2.35 7.27 -2.38 -0.02 2.33 16 41 H 0.11 2.97 6.14 -2.39 -0.01 2.95 16 42 H 0.14 1.96 6.32 -2.39 -0.02 1.94 16 Total: -1.00 -78.11 372.49 3.14 -74.97 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: 0.42 Total: -0.29 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.52 Total: -1.43 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -3.69 Total: -89.15 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.14 Total: -29.93 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -78.11 3.14 -74.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657593448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.783 kcal (2) G-P(sol) polarization free energy of solvation -78.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds