Wall clock time and date at job start Tue Mar 31 2020 18:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65597 * 120.00081 * 2 1 4 4 O 1.42092 * 104.27861 * 308.93028 * 3 2 1 5 5 O 1.42102 * 104.27733 * 181.06984 * 3 2 1 6 6 C 1.81401 * 104.44863 * 65.00046 * 3 2 1 7 7 C 1.50703 * 109.46922 * 179.97438 * 6 3 2 8 8 O 1.21277 * 120.00215 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99850 * 179.97438 * 7 6 3 10 10 C 1.46507 * 120.00019 * 174.69710 * 9 7 6 11 11 C 1.52998 * 109.54447 * 304.09675 * 10 9 7 12 12 N 1.46505 * 109.46971 * 305.58086 * 11 10 9 13 13 C 1.36936 * 119.99779 * 175.02622 * 12 11 10 14 14 H 1.08004 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99992 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00086 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47293 * 89.99808 * 17 15 13 19 19 H 1.48505 * 109.46934 * 210.00077 * 17 15 13 20 20 H 1.48500 * 109.47175 * 329.99744 * 17 15 13 21 21 C 1.53183 * 109.54375 * 183.91880 * 10 9 7 22 22 C 1.53282 * 109.06188 * 297.03244 * 21 10 9 23 23 O 1.42912 * 109.45979 * 302.44471 * 22 21 10 24 24 C 1.42896 * 114.09498 * 61.16136 * 23 22 21 25 25 C 1.53090 * 109.41790 * 298.84069 * 24 23 22 26 26 H 1.08998 * 109.46778 * 59.99728 * 1 2 3 27 27 H 1.08996 * 109.47260 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46842 * 300.00270 * 1 2 3 29 29 H 0.97003 * 119.99888 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47044 * 60.00359 * 6 3 2 31 31 H 1.08990 * 109.47306 * 299.99792 * 6 3 2 32 32 H 0.97000 * 120.00538 * 354.70332 * 9 7 6 33 33 H 1.09005 * 109.47027 * 65.58045 * 11 10 9 34 34 H 1.08997 * 109.47070 * 185.58384 * 11 10 9 35 35 H 0.96997 * 120.00109 * 355.03071 * 12 11 10 36 36 H 0.96999 * 120.00224 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.52255 * 57.01905 * 21 10 9 38 38 H 1.08996 * 109.51771 * 177.21186 * 21 10 9 39 39 H 1.08999 * 109.45470 * 182.45088 * 22 21 10 40 40 H 1.09004 * 109.47151 * 62.44562 * 22 21 10 41 41 H 1.09004 * 109.47994 * 178.85927 * 24 23 22 42 42 H 1.09003 * 109.49439 * 58.83131 * 24 23 22 43 43 H 1.09008 * 109.52175 * 297.70643 * 25 24 23 44 44 H 1.08997 * 109.57674 * 177.54882 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1703 -1.0712 5 8 3.6606 1.0491 -0.0257 6 6 1.8764 2.1973 1.5921 7 6 2.5793 3.5250 1.7119 8 8 3.2907 3.9179 0.8117 9 7 2.4164 4.2762 2.8189 10 6 3.1884 5.5099 2.9871 11 6 4.6822 5.1979 2.8780 12 7 5.0318 4.1435 3.8332 13 6 6.2990 3.6246 3.8466 14 1 7.0405 3.9922 3.1527 15 6 6.6302 2.6252 4.7513 16 7 5.7261 2.1760 5.5959 17 14 8.3589 1.9177 4.7700 18 1 9.2044 2.7014 5.7060 19 1 8.3094 0.5017 5.2149 20 1 8.9372 1.9875 3.4040 21 6 2.8908 6.1173 4.3615 22 6 1.4076 6.4980 4.4301 23 8 1.1005 7.4091 3.3728 24 6 1.3159 6.8778 2.0639 25 6 2.7937 6.5135 1.8993 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9500 -0.8401 0.0004 30 1 2.1959 1.5430 2.4033 31 1 0.7988 2.3496 1.6510 32 1 1.7881 4.0000 3.5044 33 1 4.9103 4.8620 1.8664 34 1 5.2582 6.0959 3.1012 35 1 4.3658 3.8130 4.4561 36 1 5.9576 1.4780 6.2283 37 1 3.1181 5.3879 5.1390 38 1 3.5022 7.0079 4.5062 39 1 1.1981 6.9707 5.3896 40 1 0.7970 5.6010 4.3257 41 1 1.0404 7.6242 1.3187 42 1 0.7043 5.9858 1.9282 43 1 3.4032 7.4122 1.9944 44 1 2.9528 6.0678 0.9174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673756201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:32 Heat of formation + Delta-G solvation = -166.688845 kcal Electronic energy + Delta-G solvation = -29200.018467 eV Core-core repulsion = 25085.947419 eV Total energy + Delta-G solvation = -4114.071048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90399 -39.72288 -38.26091 -37.33886 -37.07861 -35.91460 -35.54777 -33.66305 -32.44843 -32.06408 -30.78368 -28.18280 -26.79206 -25.45702 -24.68534 -23.25411 -22.58399 -20.54398 -20.50902 -19.31653 -19.10840 -18.29664 -17.77870 -17.35685 -17.07266 -16.99998 -16.80815 -16.57608 -16.28202 -15.74181 -15.57513 -15.33932 -15.14752 -14.93662 -14.62104 -14.32954 -14.08983 -13.82698 -13.74091 -13.50742 -13.28280 -13.24257 -13.16430 -13.05089 -12.85564 -12.78554 -12.52389 -12.33688 -12.18059 -12.12680 -11.98230 -11.77608 -11.47824 -11.10895 -10.87484 -10.61612 -10.51345 -10.06127 -8.98300 -7.98450 -5.23850 -0.91504 1.34844 1.43091 1.44574 1.53220 1.71773 2.05407 2.53198 2.78887 2.95737 3.16743 3.30350 3.38949 3.57346 3.73692 3.81214 3.92751 3.98311 4.19613 4.22965 4.24434 4.26982 4.43145 4.59695 4.69763 4.74081 4.78280 4.82288 4.84939 4.91299 5.03383 5.04316 5.08659 5.14109 5.17182 5.44883 5.50506 6.06276 6.24083 6.25321 6.33484 7.02722 7.33641 8.03821 8.35207 9.24143 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007800 B = 0.005950 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3589.056547 B = 4704.860246 C = 7398.282936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -1.115 6.115 3 S 2.650 3.350 4 O -0.978 6.978 5 O -0.997 6.997 6 C -0.660 4.660 7 C 0.539 3.461 8 O -0.573 6.573 9 N -0.689 5.689 10 C 0.176 3.824 11 C 0.138 3.862 12 N -0.726 5.726 13 C -0.245 4.245 14 H 0.058 0.942 15 C -0.063 4.063 16 N -0.958 5.958 17 Si 0.962 3.038 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.283 1.283 21 C -0.147 4.147 22 C 0.064 3.936 23 O -0.391 6.391 24 C 0.070 3.930 25 C -0.162 4.162 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.426 0.574 30 H 0.183 0.817 31 H 0.210 0.790 32 H 0.416 0.584 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.380 0.620 36 H 0.253 0.747 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.912 0.225 -4.375 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.878 5.878 3 S 2.739 3.261 4 O -0.968 6.968 5 O -0.987 6.987 6 C -0.790 4.790 7 C 0.324 3.676 8 O -0.454 6.454 9 N -0.340 5.340 10 C 0.090 3.910 11 C 0.010 3.990 12 N -0.370 5.370 13 C -0.377 4.377 14 H 0.076 0.924 15 C -0.256 4.256 16 N -0.609 5.609 17 Si 0.791 3.209 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.209 1.209 21 C -0.185 4.185 22 C -0.013 4.013 23 O -0.310 6.310 24 C -0.006 4.006 25 C -0.201 4.201 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.262 0.738 30 H 0.200 0.800 31 H 0.227 0.773 32 H 0.254 0.746 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.214 0.786 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.879 1.160 -5.696 19.754 hybrid contribution 1.135 -1.460 1.121 2.163 sum -17.744 -0.300 -4.575 18.327 Atomic orbital electron populations 1.21934 0.76613 1.06581 1.03055 1.55216 1.17318 1.23475 1.91803 1.03596 0.72534 0.73778 0.76176 1.93519 1.79243 1.73503 1.50510 1.93565 1.35871 1.81935 1.87329 1.30958 1.14926 1.05603 1.27560 1.19582 0.80406 0.84829 0.82773 1.90778 1.40588 1.73239 1.40746 1.45674 1.43391 1.23911 1.21069 1.20550 0.89970 0.83759 0.96728 1.21168 0.93334 0.91242 0.93256 1.42198 1.10576 1.43395 1.40831 1.19476 0.89707 1.14692 1.13827 0.92353 1.25320 1.01244 1.00078 0.98935 1.69730 1.34219 1.32602 1.24336 0.85321 0.80664 0.77528 0.77364 1.20980 1.21479 1.20921 1.22414 0.99447 1.01857 0.94831 1.22753 0.92534 0.94348 0.91626 1.87917 1.87078 1.41285 1.14710 1.22552 0.93313 0.99827 0.84934 1.22542 0.99177 0.98860 0.99571 0.91868 0.87126 0.89479 0.73774 0.79991 0.77312 0.74638 0.95910 0.96150 0.78612 0.93839 0.90276 0.89865 0.86607 0.91439 0.87313 0.92378 0.90034 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 11.03 127.77 1.41 2.01 16 2 N -1.11 -19.13 6.08 -206.54 -1.25 -20.38 16 3 S 2.65 75.66 4.60 -56.49 -0.26 75.40 16 4 O -0.98 -33.07 17.73 -127.64 -2.26 -35.34 16 5 O -1.00 -40.51 18.08 -127.64 -2.31 -42.82 16 6 C -0.66 -14.45 6.51 71.24 0.46 -13.98 16 7 C 0.54 17.47 7.26 87.66 0.64 18.11 16 8 O -0.57 -23.91 12.17 -3.02 -0.04 -23.94 16 9 N -0.69 -19.26 3.75 -422.37 -1.59 -20.84 16 10 C 0.18 5.53 0.32 3.72 0.00 5.53 16 11 C 0.14 5.95 4.80 86.38 0.41 6.37 16 12 N -0.73 -36.72 5.21 -343.44 -1.79 -38.51 16 13 C -0.24 -14.24 9.99 84.03 0.84 -13.41 16 14 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 15 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 16 N -0.96 -56.40 13.06 21.65 0.28 -56.12 16 17 Si 0.96 47.57 29.55 68.60 2.03 49.60 16 18 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 21 C -0.15 -3.91 4.84 30.75 0.15 -3.76 16 22 C 0.06 1.26 6.67 72.08 0.48 1.74 16 23 O -0.39 -8.93 10.77 -148.98 -1.60 -10.53 16 24 C 0.07 1.56 6.68 72.01 0.48 2.04 16 25 C -0.16 -4.60 4.82 30.68 0.15 -4.46 16 26 H 0.06 0.70 8.04 -2.39 -0.02 0.68 16 27 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 0.33 7.73 -2.39 -0.02 0.31 16 29 H 0.43 6.34 8.92 -96.74 -0.86 5.48 16 30 H 0.18 3.47 8.14 -2.39 -0.02 3.46 16 31 H 0.21 1.96 7.77 -2.40 -0.02 1.94 16 32 H 0.42 8.58 7.41 -92.71 -0.69 7.89 16 33 H 0.02 1.14 6.26 -2.38 -0.01 1.12 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.38 19.02 6.51 -92.71 -0.60 18.41 16 36 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.08 2.32 7.22 -2.39 -0.02 2.31 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.06 7.02 -2.39 -0.02 1.04 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 1.17 7.75 -2.39 -0.02 1.15 16 43 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.08 2.54 6.26 -2.39 -0.01 2.52 16 Total: -1.00 -88.46 364.73 -4.40 -92.86 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -1.10 Total: 33.62 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.49 Total: -2.99 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -4.35 Total: -135.85 kcal Atomic # 8 Polarization: -106.42 SS G_CDS: -6.21 Total: -112.63 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Atomic # 16 Polarization: 75.66 SS G_CDS: -0.26 Total: 75.40 kcal Total: -88.46 -4.40 -92.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673756201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.826 kcal (2) G-P(sol) polarization free energy of solvation -88.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds