Wall clock time and date at job start Tue Mar 31 2020 18:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 S 1.65608 * 119.99583 * 2 1 4 4 O 1.42102 * 104.27529 * 181.07038 * 3 2 1 5 5 O 1.42093 * 104.27575 * 308.92948 * 3 2 1 6 6 C 1.81397 * 104.44943 * 65.00070 * 3 2 1 7 7 C 1.52996 * 109.47172 * 179.97438 * 6 3 2 8 8 C 1.53005 * 109.47513 * 179.97438 * 7 6 3 9 9 N 1.46499 * 109.47128 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99768 * 180.02562 * 9 8 7 11 11 O 1.21586 * 119.99847 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00223 * 179.97438 * 10 9 8 13 13 C 1.47027 * 125.64352 * 0.02562 * 12 10 9 14 14 C 1.54331 * 107.26776 * 181.02266 * 13 12 10 15 15 C 1.55156 * 102.94280 * 22.19060 * 14 13 12 16 16 O 1.42901 * 111.00204 * 82.57180 * 15 14 13 17 17 C 1.50697 * 111.00638 * 206.38496 * 15 14 13 18 18 H 1.07999 * 119.99523 * 0.02562 * 17 15 14 19 19 C 1.37872 * 120.00221 * 180.02562 * 17 15 14 20 20 N 1.31515 * 119.99927 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00065 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47583 * 89.99340 * 21 19 17 23 23 H 1.48506 * 109.47327 * 209.99821 * 21 19 17 24 24 H 1.48504 * 109.47106 * 329.99180 * 21 19 17 25 25 C 1.47412 * 125.65086 * 179.71474 * 12 10 9 26 26 H 1.09003 * 109.47636 * 299.99529 * 1 2 3 27 27 H 1.09002 * 109.47518 * 60.00180 * 1 2 3 28 28 H 1.09006 * 109.47343 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00292 * 180.27463 * 2 1 3 30 30 H 1.09002 * 109.47515 * 299.99988 * 6 3 2 31 31 H 1.08999 * 109.47173 * 59.99866 * 6 3 2 32 32 H 1.09002 * 109.47161 * 299.99950 * 7 6 3 33 33 H 1.08999 * 109.46961 * 60.00006 * 7 6 3 34 34 H 1.09002 * 109.46948 * 300.00181 * 8 7 6 35 35 H 1.08999 * 109.46920 * 60.00082 * 8 7 6 36 36 H 0.96994 * 120.00398 * 359.97438 * 9 8 7 37 37 H 1.09006 * 109.88222 * 300.43703 * 13 12 10 38 38 H 1.08995 * 109.88377 * 61.60540 * 13 12 10 39 39 H 1.09001 * 110.71542 * 140.55375 * 14 13 12 40 40 H 1.08997 * 110.71800 * 263.64883 * 14 13 12 41 41 H 0.96709 * 113.99985 * 180.02562 * 16 15 14 42 42 H 0.96999 * 119.99684 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.36873 * 274.74778 * 25 12 10 44 44 H 1.09002 * 110.37161 * 37.07151 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4343 0.0000 4 8 3.6605 1.0494 -0.0257 5 8 1.7186 2.1703 -1.0712 6 6 1.8762 2.1974 1.5920 7 6 2.5897 3.5454 1.7137 8 6 2.2378 4.1894 3.0562 9 7 2.9205 5.4804 3.1724 10 6 2.7579 6.2314 4.2796 11 8 2.0442 5.8377 5.1819 12 7 3.3863 7.4189 4.3868 13 6 4.2735 8.0130 3.3761 14 6 4.7784 9.3568 3.9428 15 6 4.5965 9.1787 5.4734 16 8 5.6969 8.4648 6.0404 17 6 4.4122 10.5106 6.1540 18 1 4.4193 11.4201 5.5716 19 6 4.2344 10.5680 7.5200 20 7 4.2253 9.4603 8.2290 21 14 4.0053 12.2188 8.3635 22 1 2.5595 12.5540 8.4110 23 1 4.5425 12.1471 9.7461 24 1 4.7319 13.2679 7.6040 25 6 3.2929 8.3400 5.5339 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.9500 -0.8400 -0.0040 30 1 0.7985 2.3497 1.6511 31 1 2.1956 1.5432 2.4032 32 1 3.6673 3.3927 1.6549 33 1 2.2706 4.1998 0.9025 34 1 1.1601 4.3421 3.1146 35 1 2.5565 3.5351 3.8677 36 1 3.4901 5.7943 2.4528 37 1 5.1176 7.3495 3.1878 38 1 3.7208 8.1845 2.4525 39 1 5.8287 9.5097 3.6945 40 1 4.1718 10.1835 3.5732 41 1 5.6274 8.3288 6.9953 42 1 4.0999 9.5007 9.1900 43 1 2.4195 8.9842 5.4330 44 1 3.2460 7.7796 6.4677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684571206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:04 Heat of formation + Delta-G solvation = -150.305233 kcal Electronic energy + Delta-G solvation = -26970.114378 eV Core-core repulsion = 22856.753777 eV Total energy + Delta-G solvation = -4113.360601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.68970 -37.53607 -37.50809 -36.37322 -35.82451 -35.47912 -34.25598 -32.77363 -32.14543 -30.07510 -27.92172 -26.84340 -26.49135 -24.80503 -22.72467 -22.14591 -19.91444 -19.64453 -19.39718 -18.23990 -17.57652 -17.17883 -17.03454 -16.76087 -16.10211 -15.63200 -15.25643 -15.01070 -14.87418 -14.48964 -14.31116 -14.04456 -13.66702 -13.35554 -13.22059 -12.95924 -12.84638 -12.72627 -12.49125 -12.39334 -12.33065 -12.08868 -12.05932 -11.62152 -11.59309 -11.34985 -11.10562 -11.04439 -10.79050 -10.59216 -10.49934 -10.18182 -10.08066 -9.66972 -9.39765 -8.90480 -8.68534 -8.37046 -7.69304 -6.29178 -4.38675 -0.19616 2.27118 3.01306 3.20529 3.28020 3.30674 3.36843 3.71093 3.75916 4.07549 4.25579 4.31525 4.44608 4.54444 4.55041 4.87578 4.93122 4.97975 5.08766 5.18299 5.23066 5.30969 5.41045 5.64040 5.70698 5.72407 5.82459 6.02951 6.10677 6.40441 6.50978 6.67894 6.70885 6.86692 6.94014 7.22049 7.32487 7.59901 7.74531 8.00465 8.50365 8.65319 9.09306 9.31131 9.46681 10.78084 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033873 B = 0.001981 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.408758 B =14132.336435 C =14438.473625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.125 6.125 3 S 2.615 3.385 4 O -0.956 6.956 5 O -0.954 6.954 6 C -0.624 4.624 7 C -0.126 4.126 8 C 0.150 3.850 9 N -0.755 5.755 10 C 0.717 3.283 11 O -0.598 6.598 12 N -0.627 5.627 13 C 0.104 3.896 14 C -0.117 4.117 15 C 0.249 3.751 16 O -0.584 6.584 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.111 3.889 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.418 0.582 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.394 0.606 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.271 0.729 43 H 0.057 0.943 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -17.129 -15.298 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.884 5.884 3 S 2.706 3.294 4 O -0.946 6.946 5 O -0.943 6.943 6 C -0.754 4.754 7 C -0.165 4.165 8 C 0.024 3.976 9 N -0.413 5.413 10 C 0.418 3.582 11 O -0.477 6.477 12 N -0.363 5.363 13 C -0.019 4.019 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.394 6.394 17 C -0.576 4.576 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.534 5.534 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.011 4.011 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.252 0.748 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.228 0.772 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.238 0.762 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.315 -17.086 -15.745 24.078 hybrid contribution -0.371 0.479 1.434 1.557 sum -6.686 -16.607 -14.311 22.920 Atomic orbital electron populations 1.21527 0.78678 1.04393 1.02055 1.55409 1.16034 1.24708 1.92270 1.04923 0.73727 0.73832 0.76885 1.93627 1.32591 1.81150 1.87203 1.93613 1.78812 1.72276 1.49635 1.30513 1.11572 1.08870 1.24460 1.21507 1.01339 0.93371 1.00287 1.20978 0.97450 0.83866 0.95296 1.45090 1.54166 1.21339 1.20667 1.15490 0.80610 0.79786 0.82273 1.90882 1.43863 1.72619 1.40319 1.47902 1.48223 1.18156 1.22026 1.21949 0.92736 0.96298 0.90934 1.22600 1.01064 0.94408 0.97371 1.19633 0.82277 0.89140 0.88137 1.86061 1.46098 1.78476 1.28789 1.21495 1.50925 0.92513 0.92630 0.91456 1.25092 0.93451 0.97320 0.97446 1.69571 1.49323 1.26835 1.07634 0.86377 0.78458 0.83243 0.78658 1.20414 1.20995 1.19687 1.23212 1.00595 0.90081 0.87194 0.92110 0.91250 0.89907 0.74800 0.84562 0.84279 0.89412 0.89483 0.91407 0.91343 0.77184 0.92553 0.93087 0.90735 0.90466 0.76166 0.91869 0.92444 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 11.03 59.84 0.66 0.91 16 2 N -1.13 -5.22 6.08 -16.63 -0.10 -5.32 16 3 S 2.62 19.13 5.46 -107.50 -0.59 18.54 16 4 O -0.96 -10.35 18.08 -57.54 -1.04 -11.39 16 5 O -0.95 -10.30 17.73 -57.54 -1.02 -11.32 16 6 C -0.62 -3.48 6.02 37.16 0.22 -3.26 16 7 C -0.13 -1.01 5.34 -26.73 -0.14 -1.15 16 8 C 0.15 1.75 5.67 -4.04 -0.02 1.72 16 9 N -0.76 -11.03 5.52 -65.22 -0.36 -11.39 16 10 C 0.72 14.48 8.49 -86.92 -0.74 13.74 16 11 O -0.60 -14.37 16.60 5.29 0.09 -14.28 16 12 N -0.63 -12.95 3.32 -176.10 -0.59 -13.53 16 13 C 0.10 1.80 6.15 -3.06 -0.02 1.78 16 14 C -0.12 -2.28 6.12 -24.89 -0.15 -2.43 16 15 C 0.25 6.00 0.89 -89.50 -0.08 5.92 16 16 O -0.58 -15.02 13.19 -35.23 -0.46 -15.48 16 17 C -0.54 -13.85 8.25 -34.44 -0.28 -14.14 16 18 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 20 N -0.89 -23.82 10.72 55.43 0.59 -23.23 16 21 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 25 C 0.11 2.68 5.65 -2.41 -0.01 2.67 16 26 H 0.06 0.10 7.73 -51.93 -0.40 -0.30 16 27 H 0.07 0.27 8.04 -51.93 -0.42 -0.15 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.42 1.36 8.92 -34.48 -0.31 1.05 16 30 H 0.14 0.50 7.77 -51.92 -0.40 0.10 16 31 H 0.14 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.39 4.75 7.46 -40.82 -0.30 4.45 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.41 8.02 -51.93 -0.42 1.00 16 41 H 0.39 10.32 6.93 45.56 0.32 10.63 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.06 1.41 8.04 -51.93 -0.42 1.00 16 44 H 0.08 2.21 7.64 -51.93 -0.40 1.81 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -36.55 376.36 -9.58 -46.14 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.10 Total: 12.88 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.66 Total: 7.49 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.45 Total: -53.47 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -2.44 Total: -52.47 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 19.13 SS G_CDS: -0.59 Total: 18.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.55 -9.58 -46.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684571206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.168 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds