Wall clock time and date at job start Tue Mar 31 2020 18:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 S 1.65608 * 119.99583 * 2 1 4 4 O 1.42102 * 104.27529 * 181.07038 * 3 2 1 5 5 O 1.42093 * 104.27575 * 308.92948 * 3 2 1 6 6 C 1.81397 * 104.44943 * 65.00070 * 3 2 1 7 7 C 1.52996 * 109.47172 * 179.97438 * 6 3 2 8 8 C 1.53005 * 109.47513 * 179.97438 * 7 6 3 9 9 N 1.46499 * 109.47128 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99768 * 180.02562 * 9 8 7 11 11 O 1.21586 * 119.99847 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00223 * 179.97438 * 10 9 8 13 13 C 1.47027 * 125.64352 * 0.02562 * 12 10 9 14 14 C 1.54331 * 107.26776 * 181.02266 * 13 12 10 15 15 C 1.55156 * 102.94280 * 22.19060 * 14 13 12 16 16 O 1.42901 * 111.00204 * 82.57180 * 15 14 13 17 17 C 1.50697 * 111.00638 * 206.38496 * 15 14 13 18 18 H 1.07999 * 119.99523 * 0.02562 * 17 15 14 19 19 C 1.37872 * 120.00221 * 180.02562 * 17 15 14 20 20 N 1.31515 * 119.99927 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00065 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47583 * 89.99340 * 21 19 17 23 23 H 1.48506 * 109.47327 * 209.99821 * 21 19 17 24 24 H 1.48504 * 109.47106 * 329.99180 * 21 19 17 25 25 C 1.47412 * 125.65086 * 179.71474 * 12 10 9 26 26 H 1.09003 * 109.47636 * 299.99529 * 1 2 3 27 27 H 1.09002 * 109.47518 * 60.00180 * 1 2 3 28 28 H 1.09006 * 109.47343 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00292 * 180.27463 * 2 1 3 30 30 H 1.09002 * 109.47515 * 299.99988 * 6 3 2 31 31 H 1.08999 * 109.47173 * 59.99866 * 6 3 2 32 32 H 1.09002 * 109.47161 * 299.99950 * 7 6 3 33 33 H 1.08999 * 109.46961 * 60.00006 * 7 6 3 34 34 H 1.09002 * 109.46948 * 300.00181 * 8 7 6 35 35 H 1.08999 * 109.46920 * 60.00082 * 8 7 6 36 36 H 0.96994 * 120.00398 * 359.97438 * 9 8 7 37 37 H 1.09006 * 109.88222 * 300.43703 * 13 12 10 38 38 H 1.08995 * 109.88377 * 61.60540 * 13 12 10 39 39 H 1.09001 * 110.71542 * 140.55375 * 14 13 12 40 40 H 1.08997 * 110.71800 * 263.64883 * 14 13 12 41 41 H 0.96709 * 113.99985 * 180.02562 * 16 15 14 42 42 H 0.96999 * 119.99684 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.36873 * 274.74778 * 25 12 10 44 44 H 1.09002 * 110.37161 * 37.07151 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4343 0.0000 4 8 3.6605 1.0494 -0.0257 5 8 1.7186 2.1703 -1.0712 6 6 1.8762 2.1974 1.5920 7 6 2.5897 3.5454 1.7137 8 6 2.2378 4.1894 3.0562 9 7 2.9205 5.4804 3.1724 10 6 2.7579 6.2314 4.2796 11 8 2.0442 5.8377 5.1819 12 7 3.3863 7.4189 4.3868 13 6 4.2735 8.0130 3.3761 14 6 4.7784 9.3568 3.9428 15 6 4.5965 9.1787 5.4734 16 8 5.6969 8.4648 6.0404 17 6 4.4122 10.5106 6.1540 18 1 4.4193 11.4201 5.5716 19 6 4.2344 10.5680 7.5200 20 7 4.2253 9.4603 8.2290 21 14 4.0053 12.2188 8.3635 22 1 2.5595 12.5540 8.4110 23 1 4.5425 12.1471 9.7461 24 1 4.7319 13.2679 7.6040 25 6 3.2929 8.3400 5.5339 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.9500 -0.8400 -0.0040 30 1 0.7985 2.3497 1.6511 31 1 2.1956 1.5432 2.4032 32 1 3.6673 3.3927 1.6549 33 1 2.2706 4.1998 0.9025 34 1 1.1601 4.3421 3.1146 35 1 2.5565 3.5351 3.8677 36 1 3.4901 5.7943 2.4528 37 1 5.1176 7.3495 3.1878 38 1 3.7208 8.1845 2.4525 39 1 5.8287 9.5097 3.6945 40 1 4.1718 10.1835 3.5732 41 1 5.6274 8.3288 6.9953 42 1 4.0999 9.5007 9.1900 43 1 2.4195 8.9842 5.4330 44 1 3.2460 7.7796 6.4677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684571206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:03 Heat of formation + Delta-G solvation = -183.227467 kcal Electronic energy + Delta-G solvation = -26971.541994 eV Core-core repulsion = 22856.753777 eV Total energy + Delta-G solvation = -4114.788216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24619 -39.17773 -38.19833 -37.08416 -36.89491 -36.06538 -35.83274 -34.14610 -33.84564 -31.68181 -29.60956 -28.01523 -26.76826 -26.48307 -24.16611 -23.05830 -21.44643 -21.02916 -20.26613 -19.31881 -18.91907 -18.60398 -17.82635 -17.44302 -17.12111 -17.02242 -16.74038 -16.31941 -16.18966 -15.67574 -15.42904 -15.01174 -14.75537 -14.64307 -14.61213 -13.95771 -13.81488 -13.71418 -13.57506 -13.47345 -13.27539 -13.21056 -13.11335 -13.05966 -12.83417 -12.50489 -12.49776 -12.31276 -12.21850 -12.12827 -12.08818 -11.74108 -11.35157 -11.21027 -10.64470 -10.42695 -10.34383 -10.20214 -9.32040 -8.25102 -6.41946 -0.75214 1.42737 1.44864 1.54672 1.65441 1.82930 2.14323 2.38693 2.77023 3.01028 3.07809 3.24958 3.62075 3.78744 3.79390 3.82406 4.13067 4.19976 4.24185 4.31254 4.35612 4.47735 4.63545 4.65005 4.74110 4.76768 4.88247 4.92390 4.98796 5.05512 5.05737 5.10838 5.30251 5.39516 5.45993 5.47874 5.77627 6.03163 6.12264 6.17519 6.65411 7.05625 7.30757 7.39962 7.55857 8.80569 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033873 B = 0.001981 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.408758 B =14132.336435 C =14438.473625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.119 6.119 3 S 2.630 3.370 4 O -0.995 6.995 5 O -0.992 6.992 6 C -0.613 4.613 7 C -0.127 4.127 8 C 0.145 3.855 9 N -0.735 5.735 10 C 0.709 3.291 11 O -0.644 6.644 12 N -0.633 5.633 13 C 0.105 3.895 14 C -0.112 4.112 15 C 0.231 3.769 16 O -0.590 6.590 17 C -0.555 4.555 18 H 0.071 0.929 19 C 0.023 3.977 20 N -0.919 5.919 21 Si 0.967 3.033 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.265 1.265 25 C 0.125 3.875 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.425 0.575 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.377 0.623 42 H 0.270 0.730 43 H 0.043 0.957 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -17.372 -16.851 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.880 5.880 3 S 2.724 3.276 4 O -0.985 6.985 5 O -0.982 6.982 6 C -0.744 4.744 7 C -0.166 4.166 8 C 0.020 3.980 9 N -0.392 5.392 10 C 0.411 3.589 11 O -0.527 6.527 12 N -0.370 5.370 13 C -0.016 4.016 14 C -0.149 4.149 15 C 0.191 3.809 16 O -0.399 6.399 17 C -0.593 4.593 18 H 0.089 0.911 19 C -0.177 4.177 20 N -0.559 5.559 21 Si 0.792 3.208 22 H -0.202 1.202 23 H -0.210 1.210 24 H -0.189 1.189 25 C 0.001 3.999 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.261 0.739 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.227 0.773 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.667 -17.359 -17.403 25.469 hybrid contribution -0.298 0.496 1.927 2.011 sum -6.965 -16.863 -15.477 23.925 Atomic orbital electron populations 1.21792 0.77467 1.05985 1.02598 1.55131 1.16760 1.24006 1.92141 1.04200 0.72648 0.73846 0.76911 1.93571 1.35150 1.81882 1.87944 1.93565 1.79166 1.73456 1.52036 1.30412 1.13030 1.07666 1.23324 1.21528 1.02256 0.94507 0.98353 1.21195 0.97234 0.82414 0.97186 1.44965 1.53684 1.21453 1.19109 1.15742 0.80201 0.79883 0.83089 1.90843 1.45857 1.73639 1.42381 1.47847 1.49022 1.18278 1.21811 1.22144 0.93261 0.95102 0.91140 1.22605 1.02233 0.96332 0.93758 1.19902 0.81781 0.88298 0.90960 1.86050 1.46980 1.78823 1.28095 1.21841 1.50824 0.93451 0.93158 0.91075 1.25863 0.93275 1.00353 0.98226 1.69689 1.49965 1.28536 1.07663 0.85420 0.78286 0.79583 0.77520 1.20246 1.20996 1.18884 1.22741 1.00272 0.90008 0.86861 0.90137 0.92255 0.87884 0.73934 0.82109 0.82260 0.88746 0.88315 0.91387 0.92002 0.75355 0.90862 0.88956 0.89731 0.89168 0.77250 0.92021 0.93854 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.03 127.77 1.41 1.68 16 2 N -1.12 -8.36 6.08 -206.54 -1.25 -9.61 16 3 S 2.63 34.58 5.46 -56.49 -0.31 34.27 16 4 O -1.00 -20.73 18.08 -127.65 -2.31 -23.03 16 5 O -0.99 -20.47 17.73 -127.65 -2.26 -22.73 16 6 C -0.61 -5.10 6.02 71.98 0.43 -4.67 16 7 C -0.13 -1.70 5.34 30.59 0.16 -1.54 16 8 C 0.14 3.08 5.67 86.38 0.49 3.57 16 9 N -0.73 -20.02 5.52 -478.53 -2.64 -22.65 16 10 C 0.71 28.28 8.49 179.05 1.52 29.80 16 11 O -0.64 -31.53 16.60 -3.99 -0.07 -31.59 16 12 N -0.63 -25.76 3.32 -829.31 -2.76 -28.52 16 13 C 0.11 3.34 6.15 86.73 0.53 3.88 16 14 C -0.11 -4.14 6.12 31.79 0.19 -3.94 16 15 C 0.23 11.18 0.89 -10.07 -0.01 11.17 16 16 O -0.59 -30.79 13.19 -148.98 -1.97 -32.75 16 17 C -0.55 -28.67 8.25 25.60 0.21 -28.46 16 18 H 0.07 3.53 7.77 -2.91 -0.02 3.50 16 19 C 0.02 1.21 5.30 84.65 0.45 1.66 16 20 N -0.92 -50.30 10.72 21.45 0.23 -50.07 16 21 Si 0.97 41.64 29.54 68.60 2.03 43.67 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 C 0.13 6.17 5.65 86.94 0.49 6.67 16 26 H 0.08 0.01 7.73 -2.39 -0.02 -0.01 16 27 H 0.06 0.38 8.04 -2.39 -0.02 0.36 16 28 H 0.10 0.01 8.14 -2.38 -0.02 -0.01 16 29 H 0.43 2.09 8.92 -96.75 -0.86 1.22 16 30 H 0.16 0.60 7.77 -2.39 -0.02 0.58 16 31 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.41 8.61 7.46 -92.71 -0.69 7.92 16 37 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.08 2.95 8.14 -2.39 -0.02 2.94 16 40 H 0.09 3.08 8.02 -2.39 -0.02 3.06 16 41 H 0.38 20.86 6.93 -74.05 -0.51 20.34 16 42 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.04 2.20 8.04 -2.39 -0.02 2.18 16 44 H 0.04 2.16 7.64 -2.39 -0.02 2.14 16 Total: -1.00 -81.77 376.36 -6.45 -88.22 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -1.03 Total: 35.00 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 5.89 Total: 19.81 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -6.42 Total: -110.85 kcal Atomic # 8 Polarization: -103.51 SS G_CDS: -6.60 Total: -110.11 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 34.58 SS G_CDS: -0.31 Total: 34.27 kcal Total: -81.77 -6.45 -88.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684571206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.010 kcal (2) G-P(sol) polarization free energy of solvation -81.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds