Wall clock time and date at job start Tue Mar 31 2020 18:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65603 * 119.99934 * 2 1 4 4 O 1.42109 * 104.27629 * 181.07224 * 3 2 1 5 5 O 1.42100 * 104.27631 * 308.92815 * 3 2 1 6 6 C 1.81397 * 104.44872 * 65.00139 * 3 2 1 7 7 C 1.50698 * 109.47307 * 180.02562 * 6 3 2 8 8 O 1.21291 * 119.99891 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00300 * 180.02562 * 7 6 3 10 10 C 1.46504 * 120.00202 * 174.87771 * 9 7 6 11 11 C 1.53004 * 109.49757 * 302.89659 * 10 9 7 12 12 O 1.42905 * 109.46733 * 300.68526 * 11 10 9 13 13 C 1.53037 * 109.49721 * 62.99110 * 10 9 7 14 14 C 1.53042 * 109.53953 * 58.58650 * 13 10 9 15 15 C 1.53188 * 109.31364 * 61.36589 * 14 13 10 16 16 N 1.46930 * 108.77444 * 305.36715 * 15 14 13 17 17 C 1.36936 * 120.63008 * 233.58517 * 16 15 14 18 18 H 1.08001 * 119.99729 * 31.70339 * 17 16 15 19 19 C 1.38805 * 120.00103 * 211.70260 * 17 16 15 20 20 N 1.31626 * 120.00212 * 11.00800 * 19 17 16 21 21 Si 1.86800 * 120.00246 * 191.00511 * 19 17 16 22 22 H 1.48502 * 109.46908 * 60.00303 * 21 19 17 23 23 H 1.48504 * 109.47178 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47191 * 300.00174 * 21 19 17 25 25 C 1.46928 * 118.73966 * 53.60756 * 16 15 14 26 26 H 1.08997 * 109.47029 * 60.00391 * 1 2 3 27 27 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46912 * 300.00034 * 1 2 3 29 29 H 0.97001 * 120.00437 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47059 * 300.00017 * 6 3 2 31 31 H 1.08999 * 109.47024 * 59.99743 * 6 3 2 32 32 H 0.97005 * 120.00166 * 354.87482 * 9 7 6 33 33 H 1.08996 * 109.47062 * 60.68597 * 11 10 9 34 34 H 1.08999 * 109.46809 * 180.69159 * 11 10 9 35 35 H 0.96701 * 114.00110 * 180.02562 * 12 11 10 36 36 H 1.09006 * 109.46337 * 178.60884 * 13 10 9 37 37 H 1.09005 * 109.46324 * 298.56594 * 13 10 9 38 38 H 1.09000 * 109.49581 * 301.41052 * 14 13 10 39 39 H 1.09004 * 109.52155 * 181.33314 * 14 13 10 40 40 H 1.08998 * 109.58944 * 185.57833 * 15 14 13 41 41 H 1.09002 * 109.70515 * 65.21944 * 15 14 13 42 42 H 0.96992 * 120.00426 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.58764 * 186.60261 * 25 16 15 44 44 H 1.09003 * 109.70474 * 66.24894 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 3.6607 1.0492 -0.0258 5 8 1.7188 2.1703 -1.0713 6 6 1.8764 2.1973 1.5920 7 6 2.5782 3.5256 1.7114 8 8 3.2898 3.9185 0.8112 9 7 2.4160 4.2764 2.8187 10 6 3.1841 5.5128 2.9845 11 6 4.6795 5.2001 2.9007 12 8 5.0288 4.2662 3.9244 13 6 2.8056 6.5013 1.8792 14 6 1.3038 6.7887 1.9418 15 6 0.9653 7.4232 3.2944 16 7 1.4568 6.5449 4.3649 17 6 0.6166 6.1189 5.3588 18 1 -0.4315 5.9631 5.1499 19 6 1.1120 5.8873 6.6346 20 7 2.3287 6.2785 6.9492 21 14 0.0519 5.0206 7.9051 22 1 -0.3086 3.6680 7.4093 23 1 0.8069 4.8957 9.1778 24 1 -1.1851 5.8083 8.1382 25 6 2.8670 6.1328 4.3490 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.9501 -0.8400 -0.0004 30 1 0.7987 2.3496 1.6510 31 1 2.1958 1.5430 2.4032 32 1 1.7905 3.9981 3.5061 33 1 4.9069 4.7714 1.9248 34 1 5.2508 6.1184 3.0364 35 1 5.9645 4.0221 3.9315 36 1 3.3592 7.4301 2.0174 37 1 3.0531 6.0725 0.9081 38 1 0.7500 5.8568 1.8282 39 1 1.0304 7.4744 1.1398 40 1 -0.1149 7.5389 3.3837 41 1 1.4450 8.3987 3.3731 42 1 2.6751 6.1164 7.8405 43 1 3.0416 5.3971 5.1341 44 1 3.5054 7.0008 4.5132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700007413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:25 Heat of formation + Delta-G solvation = -160.570625 kcal Electronic energy + Delta-G solvation = -29380.261276 eV Core-core repulsion = 25266.455534 eV Total energy + Delta-G solvation = -4113.805742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59186 -39.14381 -38.23021 -37.38472 -37.05925 -35.90559 -35.46677 -34.34932 -32.56865 -31.69955 -30.32313 -27.33198 -26.79620 -26.66852 -24.02405 -22.95306 -21.90919 -20.47464 -20.29109 -19.06748 -18.80264 -18.19648 -18.08712 -17.70010 -17.26409 -16.91635 -16.59955 -16.27399 -15.82030 -15.66300 -15.30833 -15.17477 -14.79193 -14.74898 -14.54686 -14.27305 -14.12179 -13.77386 -13.60521 -13.45093 -13.21632 -13.16135 -13.13929 -12.90614 -12.71139 -12.53201 -12.50864 -12.26669 -12.13390 -11.99181 -11.71283 -11.57304 -11.36242 -11.14351 -10.64904 -10.53026 -10.49528 -10.00157 -8.61623 -7.83819 -5.35958 -0.88987 1.40345 1.51271 1.52061 1.59035 1.74821 2.13678 2.52821 2.81768 3.19443 3.29430 3.31124 3.41875 3.65635 3.93455 4.06847 4.11386 4.23207 4.25162 4.28500 4.33611 4.46192 4.57904 4.70115 4.76559 4.83284 4.90831 4.91720 4.97359 5.04519 5.10313 5.19780 5.30933 5.46363 5.59132 5.67798 5.75910 6.11063 6.41813 6.50988 6.89522 7.05756 7.17116 7.84824 8.40555 9.21535 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.004249 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.345555 B = 6587.789617 C = 7250.498353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -1.112 6.112 3 S 2.661 3.339 4 O -0.987 6.987 5 O -0.982 6.982 6 C -0.664 4.664 7 C 0.533 3.467 8 O -0.582 6.582 9 N -0.671 5.671 10 C 0.155 3.845 11 C 0.069 3.931 12 O -0.577 6.577 13 C -0.121 4.121 14 C -0.119 4.119 15 C 0.140 3.860 16 N -0.604 5.604 17 C -0.264 4.264 18 H 0.070 0.930 19 C -0.041 4.041 20 N -0.931 5.931 21 Si 0.965 3.035 22 H -0.270 1.270 23 H -0.301 1.301 24 H -0.280 1.280 25 C 0.194 3.806 26 H 0.060 0.940 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.428 0.572 30 H 0.192 0.808 31 H 0.190 0.810 32 H 0.411 0.589 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.390 0.610 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.014 0.986 42 H 0.249 0.751 43 H 0.074 0.926 44 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -12.049 -10.358 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.876 5.876 3 S 2.749 3.251 4 O -0.977 6.977 5 O -0.971 6.971 6 C -0.793 4.793 7 C 0.318 3.682 8 O -0.465 6.465 9 N -0.319 5.319 10 C 0.067 3.933 11 C -0.010 4.010 12 O -0.384 6.384 13 C -0.159 4.159 14 C -0.158 4.158 15 C 0.014 3.986 16 N -0.327 5.327 17 C -0.394 4.394 18 H 0.088 0.912 19 C -0.237 4.237 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.196 1.196 23 H -0.228 1.228 24 H -0.206 1.206 25 C 0.067 3.933 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.209 0.791 31 H 0.207 0.793 32 H 0.248 0.752 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -2.623 -11.221 -11.325 16.157 hybrid contribution 0.025 -0.504 1.887 1.953 sum -2.599 -11.725 -9.438 15.274 Atomic orbital electron populations 1.21889 0.77024 1.06489 1.02798 1.55175 1.17047 1.23647 1.91724 1.03357 0.72632 0.73425 0.75672 1.93527 1.35066 1.81892 1.87182 1.93531 1.79339 1.73587 1.50656 1.31023 1.14418 1.05668 1.28212 1.19647 0.80989 0.85130 0.82431 1.90726 1.42055 1.73627 1.40058 1.45714 1.42631 1.22954 1.20609 1.21179 0.89110 0.84365 0.98642 1.22526 0.94804 0.92654 0.91035 1.86504 1.32232 1.64418 1.55279 1.21767 0.97624 0.98182 0.98342 1.21827 0.95112 1.00904 0.97923 1.21099 0.97780 0.91828 0.87868 1.44229 1.07053 1.54544 1.26890 1.19403 0.92501 1.39119 0.88344 0.91214 1.25883 0.97920 1.01258 0.98667 1.70117 1.17966 1.49508 1.19955 0.85388 0.77958 0.79115 0.78170 1.19575 1.22775 1.20562 1.20614 0.84439 0.96305 0.91921 0.92076 0.87012 0.90085 0.73533 0.79099 0.79252 0.75221 0.92147 0.92480 0.76171 0.91258 0.90844 0.92672 0.90388 0.92382 0.96838 0.94174 0.90788 0.97639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 11.03 127.77 1.41 1.99 16 2 N -1.11 -15.51 6.08 -206.55 -1.25 -16.76 16 3 S 2.66 64.95 4.60 -56.49 -0.26 64.69 16 4 O -0.99 -31.58 18.08 -127.64 -2.31 -33.89 16 5 O -0.98 -31.38 17.73 -127.64 -2.26 -33.65 16 6 C -0.66 -13.84 6.51 71.24 0.46 -13.37 16 7 C 0.53 17.09 7.26 87.66 0.64 17.72 16 8 O -0.58 -21.97 12.13 -3.06 -0.04 -22.01 16 9 N -0.67 -23.12 4.04 -422.56 -1.71 -24.82 16 10 C 0.16 5.83 0.45 3.68 0.00 5.84 16 11 C 0.07 2.41 5.68 71.98 0.41 2.82 16 12 O -0.58 -19.93 12.98 -148.98 -1.93 -21.87 16 13 C -0.12 -4.24 4.52 30.62 0.14 -4.10 16 14 C -0.12 -4.02 5.93 30.67 0.18 -3.83 16 15 C 0.14 5.52 6.52 86.36 0.56 6.08 16 16 N -0.60 -28.01 2.85 -699.10 -1.99 -30.00 16 17 C -0.26 -13.21 9.58 84.03 0.80 -12.41 16 18 H 0.07 3.37 7.85 -2.91 -0.02 3.34 16 19 C -0.04 -2.12 5.04 84.86 0.43 -1.70 16 20 N -0.93 -52.27 11.10 21.65 0.24 -52.03 16 21 Si 0.97 41.78 29.57 68.60 2.03 43.81 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.19 8.85 3.75 86.36 0.32 9.18 16 26 H 0.06 0.69 8.04 -2.39 -0.02 0.67 16 27 H 0.11 0.40 8.14 -2.39 -0.02 0.39 16 28 H 0.08 0.42 7.73 -2.39 -0.02 0.41 16 29 H 0.43 4.36 8.92 -96.74 -0.86 3.49 16 30 H 0.19 2.57 7.77 -2.39 -0.02 2.55 16 31 H 0.19 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.41 14.28 8.43 -92.70 -0.78 13.50 16 33 H 0.06 2.15 6.16 -2.39 -0.01 2.13 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.39 9.53 9.12 -74.06 -0.68 8.85 16 36 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.07 2.63 6.26 -2.38 -0.01 2.62 16 38 H 0.05 1.88 7.53 -2.39 -0.02 1.87 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.07 3.87 5.88 -2.39 -0.01 3.86 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -78.28 363.66 -5.39 -83.67 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -1.27 Total: 34.65 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 5.36 Total: 8.20 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -4.71 Total: -123.61 kcal Atomic # 8 Polarization: -104.87 SS G_CDS: -6.54 Total: -111.41 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 64.95 SS G_CDS: -0.26 Total: 64.69 kcal Total: -78.28 -5.39 -83.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700007413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.901 kcal (2) G-P(sol) polarization free energy of solvation -78.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds