Wall clock time and date at job start Tue Mar 31 2020 18:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65600 * 120.00062 * 2 1 4 4 O 1.42098 * 104.27576 * 308.92781 * 3 2 1 5 5 O 1.42102 * 104.27841 * 181.06908 * 3 2 1 6 6 C 1.81404 * 104.45074 * 64.99734 * 3 2 1 7 7 C 1.50701 * 109.47098 * 179.97438 * 6 3 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 3 10 10 C 1.46921 * 120.63059 * 359.72315 * 9 7 6 11 11 C 1.52760 * 109.00903 * 233.58159 * 10 9 7 12 12 C 1.53040 * 109.38219 * 305.58856 * 11 10 9 13 13 O 1.42902 * 109.45097 * 301.22884 * 12 11 10 14 14 C 1.52996 * 109.46272 * 181.25898 * 12 11 10 15 15 N 1.46497 * 109.46924 * 59.93113 * 14 12 11 16 16 C 1.36944 * 120.00298 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99421 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00111 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99969 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47088 * 60.00139 * 20 18 16 22 22 H 1.48498 * 109.47316 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00398 * 20 18 16 24 24 C 1.53042 * 109.53627 * 61.23932 * 12 11 10 25 25 C 1.46926 * 120.62707 * 180.02562 * 9 7 6 26 26 H 1.09001 * 109.47003 * 300.00381 * 1 2 3 27 27 H 1.09002 * 109.46792 * 59.99845 * 1 2 3 28 28 H 1.08992 * 109.47240 * 180.02562 * 1 2 3 29 29 H 0.96993 * 119.99757 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47124 * 60.00022 * 6 3 2 31 31 H 1.09001 * 109.46975 * 300.00144 * 6 3 2 32 32 H 1.08996 * 109.58649 * 353.41979 * 10 9 7 33 33 H 1.09004 * 109.58204 * 113.84425 * 10 9 7 34 34 H 1.09000 * 109.56394 * 185.56047 * 11 10 9 35 35 H 1.08995 * 109.36180 * 65.49907 * 11 10 9 36 36 H 0.96700 * 114.00030 * 300.05866 * 13 12 11 37 37 H 1.08996 * 109.47686 * 179.97438 * 14 12 11 38 38 H 1.08998 * 109.47043 * 299.93607 * 14 12 11 39 39 H 0.97000 * 120.00507 * 0.02562 * 15 14 12 40 40 H 0.96999 * 119.99717 * 180.02562 * 19 18 16 41 41 H 1.09008 * 109.49904 * 178.67973 * 24 12 11 42 42 H 1.08998 * 109.49938 * 58.59037 * 24 12 11 43 43 H 1.09005 * 109.58410 * 246.15856 * 25 9 7 44 44 H 1.08998 * 109.58968 * 6.58185 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0713 5 8 3.6607 1.0492 -0.0257 6 6 1.8764 2.1974 1.5920 7 6 2.5793 3.5251 1.7118 8 8 3.2908 3.9179 0.8116 9 7 2.4163 4.2763 2.8189 10 6 1.5520 3.8171 3.9146 11 6 0.5292 4.9067 4.2316 12 6 1.2592 6.2215 4.5152 13 8 2.1555 6.0409 5.6134 14 6 0.2383 7.3065 4.8636 15 7 -0.5193 6.9011 6.0502 16 6 -1.4963 7.7194 6.5514 17 1 -1.7086 8.6634 6.0716 18 6 -2.2138 7.3355 7.6759 19 7 -1.9548 6.1851 8.2609 20 14 -3.5470 8.4513 8.3592 21 1 -4.5901 8.6672 7.3245 22 1 -4.1586 7.8174 9.5546 23 1 -2.9517 9.7569 8.7418 24 6 2.0505 6.6452 3.2756 25 6 3.0945 5.5731 2.9500 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.9500 -0.8400 0.0004 30 1 2.1957 1.5432 2.4033 31 1 0.7987 2.3497 1.6509 32 1 1.0330 2.9071 3.6138 33 1 2.1574 3.6196 4.7993 34 1 -0.0526 4.6176 5.1068 35 1 -0.1364 5.0368 3.3783 36 1 1.7221 5.7712 6.4346 37 1 0.7580 8.2429 5.0661 38 1 -0.4452 7.4447 4.0259 39 1 -0.3290 6.0530 6.4808 40 1 -2.4564 5.9167 9.0465 41 1 2.5513 7.5937 3.4703 42 1 1.3706 6.7590 2.4313 43 1 3.8285 5.5219 3.7543 44 1 3.5929 5.8213 2.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700307683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:05 Heat of formation + Delta-G solvation = -169.490328 kcal Electronic energy + Delta-G solvation = -28020.328646 eV Core-core repulsion = 23906.136117 eV Total energy + Delta-G solvation = -4114.192529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.62197 -39.89705 -38.26227 -37.11772 -36.96019 -35.89387 -35.76903 -33.64333 -33.02100 -31.89903 -31.02452 -28.16831 -26.79026 -25.61397 -24.52080 -23.52699 -21.80717 -20.76046 -20.02693 -19.48094 -19.17946 -18.15396 -17.78887 -17.58456 -17.21590 -16.84511 -16.71997 -16.36358 -15.85121 -15.76131 -15.67813 -15.04884 -14.92843 -14.86277 -14.56595 -14.37041 -14.26963 -13.80328 -13.70024 -13.55433 -13.25342 -13.24110 -13.16609 -13.01894 -12.80433 -12.73486 -12.50963 -12.33112 -12.27357 -12.14997 -12.08908 -11.96716 -11.44124 -11.30750 -10.96538 -10.75573 -10.50890 -9.83251 -9.01820 -7.96942 -5.24641 -0.92699 1.21793 1.49259 1.50203 1.56259 1.62562 1.89789 2.55058 2.73142 3.10286 3.15623 3.24621 3.40613 3.62777 3.70477 3.86220 3.90585 3.99595 4.13684 4.21885 4.24952 4.32780 4.38868 4.55526 4.69345 4.70662 4.73706 4.77683 4.88179 4.92113 4.95249 5.06567 5.06791 5.13090 5.28873 5.38432 5.49719 6.10426 6.12076 6.25325 6.72882 6.74550 7.33996 8.03974 8.30248 9.25249 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002637 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.888244 B =10615.846540 C =11467.974153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -1.111 6.111 3 S 2.652 3.348 4 O -0.986 6.986 5 O -0.988 6.988 6 C -0.663 4.663 7 C 0.532 3.468 8 O -0.588 6.588 9 N -0.590 5.590 10 C 0.107 3.893 11 C -0.155 4.155 12 C 0.135 3.865 13 O -0.562 6.562 14 C 0.128 3.872 15 N -0.734 5.734 16 C -0.249 4.249 17 H 0.069 0.931 18 C -0.064 4.064 19 N -0.960 5.960 20 Si 0.967 3.033 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.283 1.283 24 C -0.113 4.113 25 C 0.116 3.884 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.428 0.572 30 H 0.204 0.796 31 H 0.199 0.801 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.383 0.617 37 H 0.018 0.982 38 H 0.027 0.973 39 H 0.378 0.622 40 H 0.253 0.747 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.091 -14.910 -12.081 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.875 5.875 3 S 2.742 3.258 4 O -0.976 6.976 5 O -0.978 6.978 6 C -0.792 4.792 7 C 0.320 3.680 8 O -0.470 6.470 9 N -0.320 5.320 10 C -0.014 4.014 11 C -0.193 4.193 12 C 0.094 3.906 13 O -0.370 6.370 14 C 0.001 3.999 15 N -0.379 5.379 16 C -0.381 4.381 17 H 0.086 0.914 18 C -0.257 4.257 19 N -0.611 5.611 20 Si 0.796 3.204 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.210 1.210 24 C -0.152 4.152 25 C -0.006 4.006 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.128 0.872 29 H 0.265 0.735 30 H 0.221 0.779 31 H 0.216 0.784 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.232 0.768 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.212 0.788 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.213 -13.896 -13.650 20.446 hybrid contribution -1.355 0.173 1.850 2.300 sum 4.858 -13.723 -11.800 18.740 Atomic orbital electron populations 1.21898 0.77005 1.06479 1.02888 1.55152 1.16995 1.23597 1.91733 1.03558 0.72656 0.73540 0.76085 1.93540 1.79349 1.73660 1.51020 1.93537 1.35084 1.81911 1.87276 1.31031 1.14621 1.05415 1.28182 1.19761 0.80808 0.85538 0.81916 1.90826 1.42007 1.73919 1.40254 1.48072 1.46608 1.19902 1.17435 1.21951 0.91929 0.97943 0.89624 1.22407 0.98227 0.95249 1.03422 1.21250 0.88554 0.93584 0.87204 1.86384 1.37213 1.91626 1.21732 1.21431 0.92787 0.96223 0.89486 1.42342 1.41655 1.22614 1.31295 1.19481 1.10483 1.00344 1.07791 0.91351 1.25405 1.02456 0.98818 0.99034 1.69734 1.45033 1.22856 1.23431 0.85319 0.79423 0.78171 0.77445 1.20610 1.21979 1.20956 1.21836 0.98385 0.99347 0.95620 1.21588 0.94830 0.81343 1.02873 0.89572 0.92377 0.87193 0.73514 0.77919 0.78395 0.85891 0.89432 0.90023 0.90420 0.76835 0.96448 0.95519 0.78772 0.93834 0.89350 0.89773 0.89981 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 11.03 127.77 1.41 1.75 16 2 N -1.11 -10.88 6.08 -206.54 -1.25 -12.13 16 3 S 2.65 52.22 4.60 -56.49 -0.26 51.96 16 4 O -0.99 -28.08 17.73 -127.64 -2.26 -30.34 16 5 O -0.99 -27.38 18.08 -127.64 -2.31 -29.69 16 6 C -0.66 -8.53 4.86 71.24 0.35 -8.18 16 7 C 0.53 12.61 7.72 87.66 0.68 13.29 16 8 O -0.59 -19.21 15.28 -3.03 -0.05 -19.25 16 9 N -0.59 -12.87 2.98 -819.83 -2.44 -15.31 16 10 C 0.11 1.88 6.08 86.22 0.52 2.41 16 11 C -0.15 -3.68 4.91 30.53 0.15 -3.53 16 12 C 0.14 3.79 0.71 -10.77 -0.01 3.78 16 13 O -0.56 -16.53 11.71 -148.98 -1.74 -18.27 16 14 C 0.13 4.67 5.40 86.38 0.47 5.13 16 15 N -0.73 -33.17 5.07 -343.47 -1.74 -34.91 16 16 C -0.25 -13.04 9.99 84.03 0.84 -12.20 16 17 H 0.07 3.53 7.83 -2.91 -0.02 3.50 16 18 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 19 N -0.96 -53.79 13.06 21.65 0.28 -53.51 16 20 Si 0.97 43.77 29.55 68.60 2.03 45.80 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 C -0.11 -2.80 5.11 30.66 0.16 -2.64 16 25 C 0.12 2.79 6.19 86.35 0.53 3.32 16 26 H 0.09 0.05 7.73 -2.39 -0.02 0.03 16 27 H 0.06 0.49 8.04 -2.39 -0.02 0.48 16 28 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.43 2.73 8.92 -96.75 -0.86 1.87 16 30 H 0.20 0.92 7.95 -2.39 -0.02 0.91 16 31 H 0.20 1.03 7.31 -2.39 -0.02 1.01 16 32 H 0.12 1.19 5.93 -2.39 -0.01 1.18 16 33 H 0.09 1.52 7.81 -2.38 -0.02 1.50 16 34 H 0.08 2.23 6.82 -2.39 -0.02 2.21 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.38 11.39 7.85 -74.06 -0.58 10.81 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.38 17.22 5.58 -92.71 -0.52 16.71 16 40 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.08 1.98 7.81 -2.38 -0.02 1.96 16 44 H 0.09 2.24 7.00 -2.39 -0.02 2.22 16 Total: -1.00 -81.45 366.69 -5.10 -86.54 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -0.91 Total: 28.94 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.56 Total: 0.17 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.15 Total: -115.86 kcal Atomic # 8 Polarization: -91.19 SS G_CDS: -6.36 Total: -97.55 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 52.22 SS G_CDS: -0.26 Total: 51.96 kcal Total: -81.45 -5.10 -86.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700307683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.946 kcal (2) G-P(sol) polarization free energy of solvation -81.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds