Wall clock time and date at job start Tue Mar 31 2020 18:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65607 * 119.99709 * 2 1 4 4 O 1.42105 * 104.27917 * 308.93216 * 3 2 1 5 5 O 1.42093 * 104.27931 * 181.07260 * 3 2 1 6 6 C 1.81404 * 104.44556 * 64.99926 * 3 2 1 7 7 C 1.50700 * 109.46751 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00278 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99754 * 179.97438 * 7 6 3 10 10 C 1.46920 * 120.63135 * 359.97438 * 9 7 6 11 11 C 1.53191 * 108.77672 * 233.62750 * 10 9 7 12 12 C 1.53104 * 109.33123 * 305.36257 * 11 10 9 13 13 C 1.53041 * 109.49954 * 61.34060 * 12 11 10 14 14 C 1.53008 * 109.49799 * 178.68330 * 13 12 11 15 15 O 1.42895 * 109.47349 * 184.93804 * 14 13 12 16 16 N 1.46506 * 109.49817 * 58.62334 * 13 12 11 17 17 C 1.36931 * 119.99939 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00644 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99715 * 179.97438 * 17 16 13 20 20 N 1.31621 * 119.99673 * 179.72262 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47274 * 89.99913 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99904 * 21 19 17 25 25 C 1.46930 * 120.63000 * 179.97438 * 9 7 6 26 26 H 1.09003 * 109.47022 * 59.99966 * 1 2 3 27 27 H 1.08998 * 109.46654 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46997 * 299.99697 * 1 2 3 29 29 H 0.96998 * 120.00143 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46503 * 60.00508 * 6 3 2 31 31 H 1.08999 * 109.47426 * 299.99902 * 6 3 2 32 32 H 1.09008 * 109.58991 * 353.41724 * 10 9 7 33 33 H 1.09003 * 109.58762 * 113.69339 * 10 9 7 34 34 H 1.08998 * 109.49684 * 65.31935 * 11 10 9 35 35 H 1.09002 * 109.49751 * 185.37867 * 11 10 9 36 36 H 1.08996 * 109.45339 * 301.35355 * 12 11 10 37 37 H 1.08998 * 109.50530 * 181.36530 * 12 11 10 38 38 H 1.08996 * 109.47114 * 304.93952 * 14 13 12 39 39 H 1.09001 * 109.46708 * 64.93801 * 14 13 12 40 40 H 0.96696 * 114.00295 * 180.02562 * 15 14 13 41 41 H 0.97000 * 119.99307 * 0.06107 * 16 13 12 42 42 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.58624 * 6.58900 * 25 9 7 44 44 H 1.08998 * 109.70440 * 246.23092 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7187 2.1705 -1.0713 5 8 3.6606 1.0494 -0.0258 6 6 1.8763 2.1973 1.5921 7 6 2.5790 3.5251 1.7119 8 8 3.2905 3.9181 0.8118 9 7 2.4160 4.2763 2.8190 10 6 1.5561 3.8144 3.9171 11 6 0.5289 4.9065 4.2317 12 6 1.2587 6.2221 4.5157 13 6 2.0502 6.6451 3.2760 14 6 2.7532 7.9765 3.5487 15 8 3.3973 8.4281 2.3558 16 7 1.1364 6.7981 2.1412 17 6 1.6220 7.1730 0.9169 18 1 2.6785 7.3563 0.7880 19 6 0.7562 7.3175 -0.1585 20 7 1.2222 7.6831 -1.3339 21 14 -1.0712 7.0012 0.0646 22 1 -1.7474 8.2631 0.4591 23 1 -1.6479 6.5089 -1.2123 24 1 -1.2712 5.9803 1.1243 25 6 3.0950 5.5726 2.9507 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 2.1958 1.5430 2.4032 31 1 0.7986 2.3496 1.6511 32 1 1.0396 2.9022 3.6180 33 1 2.1647 3.6170 4.7996 34 1 -0.1367 5.0366 3.3784 35 1 -0.0535 4.6170 5.1065 36 1 1.9423 6.0845 5.3534 37 1 0.5317 6.9954 4.7637 38 1 2.0191 8.7163 3.8676 39 1 3.4968 7.8405 4.3340 40 1 3.8646 9.2688 2.4552 41 1 0.1874 6.6344 2.2572 42 1 0.6172 7.7844 -2.0853 43 1 3.5939 5.8206 2.0139 44 1 3.8299 5.5226 3.7541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717260083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:12 Heat of formation + Delta-G solvation = -114.692531 kcal Electronic energy + Delta-G solvation = -29714.136150 eV Core-core repulsion = 25602.319831 eV Total energy + Delta-G solvation = -4111.816319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.09694 -38.02106 -36.93761 -35.85537 -35.74970 -35.09948 -33.95935 -32.37757 -31.31321 -30.42296 -29.08010 -26.15110 -25.48744 -25.12302 -23.20059 -21.87301 -20.23975 -19.17003 -18.34328 -17.99936 -17.70094 -16.93262 -16.49137 -16.28910 -16.19638 -15.58299 -15.36739 -14.71173 -14.56433 -14.25697 -14.08813 -13.99289 -13.74574 -13.39002 -13.11386 -12.97126 -12.84749 -12.63019 -12.41113 -12.13002 -11.88562 -11.80996 -11.78441 -11.61398 -11.36412 -11.15720 -10.89286 -10.84647 -10.75188 -10.59426 -10.18095 -9.97204 -9.81640 -9.69909 -9.38167 -8.93576 -8.83067 -8.25868 -7.08280 -5.46418 -2.82368 0.23008 2.75392 2.82623 3.20669 3.40803 3.47188 3.56352 3.91047 4.24784 4.35098 4.65293 4.78428 4.81126 4.86599 4.90707 4.97498 5.01745 5.16119 5.21471 5.28236 5.42934 5.47487 5.55075 5.57081 5.62596 5.76342 5.85166 5.88484 5.96773 6.02888 6.07363 6.12999 6.45659 6.48162 6.74513 6.77062 6.89670 7.62867 8.31661 8.36633 8.43232 8.73484 9.50724 10.16526 10.30539 11.72337 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.005402 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.694885 B = 5181.740592 C = 5982.407545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.129 6.129 3 S 2.642 3.358 4 O -0.925 6.925 5 O -0.945 6.945 6 C -0.672 4.672 7 C 0.544 3.456 8 O -0.514 6.514 9 N -0.585 5.585 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.119 4.119 13 C 0.193 3.807 14 C 0.076 3.924 15 O -0.528 6.528 16 N -0.729 5.729 17 C -0.212 4.212 18 H 0.118 0.882 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.869 3.131 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.285 1.285 25 C 0.107 3.893 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.416 0.584 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.025 0.975 40 H 0.353 0.647 41 H 0.357 0.643 42 H 0.254 0.746 43 H 0.113 0.887 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 -14.232 16.008 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.889 5.889 3 S 2.729 3.271 4 O -0.914 6.914 5 O -0.935 6.935 6 C -0.800 4.800 7 C 0.328 3.672 8 O -0.390 6.390 9 N -0.317 5.317 10 C -0.017 4.017 11 C -0.173 4.173 12 C -0.157 4.157 13 C 0.100 3.900 14 C -0.005 4.005 15 O -0.331 6.331 16 N -0.371 5.371 17 C -0.341 4.341 18 H 0.135 0.865 19 C -0.193 4.193 20 N -0.580 5.580 21 Si 0.700 3.300 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.212 1.212 25 C -0.017 4.017 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.250 0.750 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.198 0.802 41 H 0.190 0.810 42 H 0.065 0.935 43 H 0.131 0.869 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.569 -14.005 14.402 20.149 hybrid contribution -1.730 -0.095 1.214 2.116 sum -3.299 -14.100 15.615 21.296 Atomic orbital electron populations 1.21523 0.78924 1.04062 1.02236 1.55689 1.15999 1.24974 1.92198 1.04355 0.73697 0.73093 0.75985 1.93651 1.78561 1.71506 1.47720 1.93575 1.32197 1.81301 1.86455 1.31078 1.12555 1.08199 1.28187 1.18860 0.81661 0.83802 0.82835 1.90905 1.39023 1.71579 1.37494 1.47601 1.47223 1.20131 1.16723 1.21734 0.92561 0.97412 0.90016 1.21913 0.98097 0.95176 1.02153 1.21688 0.99482 0.97198 0.97352 1.19921 0.90354 0.91685 0.88005 1.22623 0.94383 0.96603 0.86877 1.87054 1.71441 1.41433 1.33170 1.42805 1.04347 1.82774 1.07200 1.19371 0.96250 1.34922 0.83582 0.86497 1.24644 0.96092 1.02746 0.95840 1.69662 1.33226 1.54790 1.00334 0.86805 0.89210 0.77397 0.76538 1.21762 1.21923 1.21158 1.22278 0.94419 0.81137 1.03894 0.91019 0.89993 0.92385 0.75042 0.82795 0.82732 0.90293 0.91325 0.90701 0.91001 0.91366 0.91323 0.94413 0.95655 0.80224 0.80951 0.93507 0.86902 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 11.03 59.85 0.66 1.28 16 2 N -1.13 -11.14 6.08 -16.63 -0.10 -11.24 16 3 S 2.64 41.73 4.60 -107.50 -0.49 41.23 16 4 O -0.92 -19.65 17.73 -57.55 -1.02 -20.67 16 5 O -0.95 -17.47 18.08 -57.55 -1.04 -18.51 16 6 C -0.67 -8.84 4.85 36.01 0.17 -8.67 16 7 C 0.54 10.43 7.72 -10.98 -0.08 10.35 16 8 O -0.51 -12.68 15.28 5.56 0.08 -12.59 16 9 N -0.58 -9.83 2.89 -172.75 -0.50 -10.33 16 10 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 11 C -0.14 -1.62 5.91 -26.58 -0.16 -1.78 16 12 C -0.12 -1.56 4.77 -26.66 -0.13 -1.68 16 13 C 0.19 3.45 0.68 -131.68 -0.09 3.36 16 14 C 0.08 1.27 6.09 37.16 0.23 1.50 16 15 O -0.53 -10.51 10.04 -35.23 -0.35 -10.86 16 16 N -0.73 -16.74 4.55 -47.10 -0.21 -16.95 16 17 C -0.21 -6.07 8.55 -15.06 -0.13 -6.20 16 18 H 0.12 3.71 5.49 -52.49 -0.29 3.42 16 19 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 20 N -0.93 -31.32 13.97 55.49 0.78 -30.54 16 21 Si 0.87 23.03 27.74 -169.99 -4.71 18.31 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 24 H -0.28 -6.87 6.52 56.52 0.37 -6.51 16 25 C 0.11 1.97 4.92 -3.70 -0.02 1.95 16 26 H 0.07 0.67 8.04 -51.93 -0.42 0.26 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.34 7.73 -51.93 -0.40 -0.06 16 29 H 0.42 3.10 8.92 -34.48 -0.31 2.79 16 30 H 0.15 1.26 7.95 -51.92 -0.41 0.85 16 31 H 0.15 1.62 7.32 -51.92 -0.38 1.24 16 32 H 0.08 0.71 5.93 -51.92 -0.31 0.40 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.12 6.75 -51.93 -0.35 0.77 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.35 5.30 9.12 45.56 0.42 5.72 16 41 H 0.36 8.11 4.29 -40.82 -0.17 7.94 16 42 H 0.25 8.24 8.31 -40.82 -0.34 7.90 16 43 H 0.11 2.65 5.82 -51.93 -0.30 2.35 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -44.32 358.85 -7.31 -51.63 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -5.48 Total: 13.86 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 0.34 Total: 1.24 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -0.04 Total: -69.06 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -2.33 Total: -62.63 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.71 Total: 18.31 kcal Atomic # 16 Polarization: 41.73 SS G_CDS: -0.49 Total: 41.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -44.32 -7.31 -51.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717260083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.060 kcal (2) G-P(sol) polarization free energy of solvation -44.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds