Wall clock time and date at job start Tue Mar 31 2020 18:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65607 * 119.99709 * 2 1 4 4 O 1.42105 * 104.27917 * 308.93216 * 3 2 1 5 5 O 1.42093 * 104.27931 * 181.07260 * 3 2 1 6 6 C 1.81404 * 104.44556 * 64.99926 * 3 2 1 7 7 C 1.50700 * 109.46751 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00278 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99754 * 179.97438 * 7 6 3 10 10 C 1.46920 * 120.63135 * 359.97438 * 9 7 6 11 11 C 1.53191 * 108.77672 * 233.62750 * 10 9 7 12 12 C 1.53104 * 109.33123 * 305.36257 * 11 10 9 13 13 C 1.53041 * 109.49954 * 61.34060 * 12 11 10 14 14 C 1.53008 * 109.49799 * 178.68330 * 13 12 11 15 15 O 1.42895 * 109.47349 * 184.93804 * 14 13 12 16 16 N 1.46506 * 109.49817 * 58.62334 * 13 12 11 17 17 C 1.36931 * 119.99939 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00644 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99715 * 179.97438 * 17 16 13 20 20 N 1.31621 * 119.99673 * 179.72262 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47274 * 89.99913 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99904 * 21 19 17 25 25 C 1.46930 * 120.63000 * 179.97438 * 9 7 6 26 26 H 1.09003 * 109.47022 * 59.99966 * 1 2 3 27 27 H 1.08998 * 109.46654 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46997 * 299.99697 * 1 2 3 29 29 H 0.96998 * 120.00143 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46503 * 60.00508 * 6 3 2 31 31 H 1.08999 * 109.47426 * 299.99902 * 6 3 2 32 32 H 1.09008 * 109.58991 * 353.41724 * 10 9 7 33 33 H 1.09003 * 109.58762 * 113.69339 * 10 9 7 34 34 H 1.08998 * 109.49684 * 65.31935 * 11 10 9 35 35 H 1.09002 * 109.49751 * 185.37867 * 11 10 9 36 36 H 1.08996 * 109.45339 * 301.35355 * 12 11 10 37 37 H 1.08998 * 109.50530 * 181.36530 * 12 11 10 38 38 H 1.08996 * 109.47114 * 304.93952 * 14 13 12 39 39 H 1.09001 * 109.46708 * 64.93801 * 14 13 12 40 40 H 0.96696 * 114.00295 * 180.02562 * 15 14 13 41 41 H 0.97000 * 119.99307 * 0.06107 * 16 13 12 42 42 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.58624 * 6.58900 * 25 9 7 44 44 H 1.08998 * 109.70440 * 246.23092 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7187 2.1705 -1.0713 5 8 3.6606 1.0494 -0.0258 6 6 1.8763 2.1973 1.5921 7 6 2.5790 3.5251 1.7119 8 8 3.2905 3.9181 0.8118 9 7 2.4160 4.2763 2.8190 10 6 1.5561 3.8144 3.9171 11 6 0.5289 4.9065 4.2317 12 6 1.2587 6.2221 4.5157 13 6 2.0502 6.6451 3.2760 14 6 2.7532 7.9765 3.5487 15 8 3.3973 8.4281 2.3558 16 7 1.1364 6.7981 2.1412 17 6 1.6220 7.1730 0.9169 18 1 2.6785 7.3563 0.7880 19 6 0.7562 7.3175 -0.1585 20 7 1.2222 7.6831 -1.3339 21 14 -1.0712 7.0012 0.0646 22 1 -1.7474 8.2631 0.4591 23 1 -1.6479 6.5089 -1.2123 24 1 -1.2712 5.9803 1.1243 25 6 3.0950 5.5726 2.9507 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 2.1958 1.5430 2.4032 31 1 0.7986 2.3496 1.6511 32 1 1.0396 2.9022 3.6180 33 1 2.1647 3.6170 4.7996 34 1 -0.1367 5.0366 3.3784 35 1 -0.0535 4.6170 5.1065 36 1 1.9423 6.0845 5.3534 37 1 0.5317 6.9954 4.7637 38 1 2.0191 8.7163 3.8676 39 1 3.4968 7.8405 4.3340 40 1 3.8646 9.2688 2.4552 41 1 0.1874 6.6344 2.2572 42 1 0.6172 7.7844 -2.0853 43 1 3.5939 5.8206 2.0139 44 1 3.8299 5.5226 3.7541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717260083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:11 Heat of formation + Delta-G solvation = -158.792002 kcal Electronic energy + Delta-G solvation = -29716.048446 eV Core-core repulsion = 25602.319831 eV Total energy + Delta-G solvation = -4113.728615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43758 -39.48377 -38.29326 -37.24809 -37.09146 -35.94552 -35.64530 -34.09396 -32.70174 -31.88306 -30.69364 -26.84072 -26.70125 -26.38613 -25.25633 -22.99413 -21.54769 -20.43704 -19.74165 -19.64530 -19.11525 -18.08918 -17.85044 -17.77735 -17.37794 -16.80039 -16.75339 -16.20800 -15.85017 -15.78579 -15.61635 -15.05983 -14.76397 -14.65737 -14.58855 -14.24728 -14.09337 -13.82054 -13.67191 -13.55135 -13.34758 -13.25232 -13.19022 -13.00913 -12.74463 -12.59634 -12.51484 -12.19533 -12.05195 -11.87674 -11.80342 -11.37375 -11.36991 -11.20353 -10.82535 -10.57880 -10.54294 -9.69117 -9.08666 -7.80177 -5.11998 -0.95369 1.25521 1.36671 1.42641 1.43906 1.70918 2.03109 2.58418 2.75978 3.13437 3.23051 3.36486 3.55798 3.72198 3.87820 3.94118 4.02861 4.10275 4.15925 4.22541 4.30991 4.53665 4.59187 4.63952 4.65233 4.73613 4.79524 4.86988 4.88440 5.00739 5.01018 5.02889 5.13755 5.39063 5.45484 5.59398 6.11199 6.15457 6.32988 6.47478 7.03276 7.12853 7.34307 8.00093 8.16902 9.43244 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.005402 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.694885 B = 5181.740592 C = 5982.407545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -1.106 6.106 3 S 2.638 3.362 4 O -0.998 6.998 5 O -0.988 6.988 6 C -0.650 4.650 7 C 0.519 3.481 8 O -0.592 6.592 9 N -0.582 5.582 10 C 0.092 3.908 11 C -0.135 4.135 12 C -0.113 4.113 13 C 0.178 3.822 14 C 0.071 3.929 15 O -0.572 6.572 16 N -0.730 5.730 17 C -0.164 4.164 18 H 0.075 0.925 19 C -0.095 4.095 20 N -0.999 5.999 21 Si 0.938 3.062 22 H -0.282 1.282 23 H -0.313 1.313 24 H -0.242 1.242 25 C 0.107 3.893 26 H 0.047 0.953 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.430 0.570 30 H 0.216 0.784 31 H 0.191 0.809 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.371 0.629 41 H 0.361 0.639 42 H 0.244 0.756 43 H 0.047 0.953 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.838 -16.870 22.057 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.871 5.871 3 S 2.729 3.271 4 O -0.988 6.988 5 O -0.978 6.978 6 C -0.780 4.780 7 C 0.305 3.695 8 O -0.474 6.474 9 N -0.312 5.312 10 C -0.029 4.029 11 C -0.173 4.173 12 C -0.151 4.151 13 C 0.088 3.912 14 C -0.009 4.009 15 O -0.378 6.378 16 N -0.373 5.373 17 C -0.296 4.296 18 H 0.093 0.907 19 C -0.283 4.283 20 N -0.654 5.654 21 Si 0.768 3.232 22 H -0.209 1.209 23 H -0.241 1.241 24 H -0.167 1.167 25 C -0.018 4.018 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.267 0.733 30 H 0.233 0.767 31 H 0.209 0.791 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.218 0.782 41 H 0.195 0.805 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.179 -16.694 20.579 26.826 hybrid contribution -0.776 0.720 -0.453 1.151 sum -4.954 -15.974 20.127 26.168 Atomic orbital electron populations 1.21908 0.76963 1.06676 1.02635 1.55082 1.16921 1.23228 1.91851 1.03863 0.72948 0.73714 0.76607 1.93574 1.79438 1.73754 1.52000 1.93506 1.34891 1.81996 1.87404 1.30869 1.14059 1.05551 1.27551 1.19866 0.81328 0.85785 0.82491 1.90890 1.42469 1.73732 1.40290 1.47843 1.47068 1.18911 1.17412 1.22327 0.92572 0.98517 0.89470 1.21973 0.97871 0.94535 1.02934 1.21734 0.99878 0.98176 0.95319 1.20474 0.90216 0.92019 0.88522 1.22759 0.95512 0.95987 0.86673 1.86993 1.72186 1.42826 1.35763 1.42770 1.05390 1.82398 1.06713 1.19204 0.94293 1.30433 0.85647 0.90703 1.25511 1.01822 1.05196 0.95728 1.69921 1.34790 1.59024 1.01623 0.85619 0.82486 0.78493 0.76608 1.20882 1.24138 1.16662 1.22078 0.95310 0.82642 1.01733 0.93445 0.86222 0.89375 0.73331 0.76740 0.79137 0.86914 0.87282 0.93820 0.86183 0.87413 0.90546 0.93750 0.91474 0.78223 0.80486 0.94727 0.93479 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 11.03 127.77 1.41 2.20 16 2 N -1.11 -19.53 6.08 -206.54 -1.25 -20.79 16 3 S 2.64 83.83 4.60 -56.49 -0.26 83.57 16 4 O -1.00 -45.15 17.73 -127.64 -2.26 -47.41 16 5 O -0.99 -37.91 18.08 -127.64 -2.31 -40.21 16 6 C -0.65 -14.95 4.85 71.24 0.35 -14.61 16 7 C 0.52 19.50 7.72 87.66 0.68 20.17 16 8 O -0.59 -31.11 15.28 -3.04 -0.05 -31.15 16 9 N -0.58 -17.87 2.89 -818.85 -2.37 -20.24 16 10 C 0.09 1.49 6.34 86.36 0.55 2.03 16 11 C -0.14 -2.32 5.91 30.69 0.18 -2.14 16 12 C -0.11 -2.29 4.77 30.64 0.15 -2.14 16 13 C 0.18 5.93 0.68 3.69 0.00 5.93 16 14 C 0.07 2.22 6.09 71.98 0.44 2.66 16 15 O -0.57 -23.53 10.04 -148.98 -1.50 -25.03 16 16 N -0.73 -32.93 4.55 -302.93 -1.38 -34.31 16 17 C -0.16 -9.82 8.55 84.04 0.72 -9.10 16 18 H 0.08 5.13 5.49 -2.91 -0.02 5.11 16 19 C -0.09 -6.14 5.50 84.86 0.47 -5.68 16 20 N -1.00 -72.24 13.97 21.65 0.30 -71.93 16 21 Si 0.94 48.97 27.74 68.60 1.90 50.88 16 22 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.31 -17.29 7.11 99.48 0.71 -16.59 16 24 H -0.24 -10.71 6.52 99.48 0.65 -10.06 16 25 C 0.11 3.82 4.92 86.37 0.42 4.25 16 26 H 0.05 0.84 8.04 -2.39 -0.02 0.82 16 27 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.09 0.58 7.73 -2.39 -0.02 0.56 16 29 H 0.43 5.42 8.92 -96.74 -0.86 4.56 16 30 H 0.22 2.17 7.95 -2.39 -0.02 2.15 16 31 H 0.19 3.00 7.32 -2.39 -0.02 2.98 16 32 H 0.11 1.09 5.93 -2.38 -0.01 1.08 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.04 1.05 6.75 -2.39 -0.02 1.03 16 35 H 0.12 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.37 11.60 9.12 -74.06 -0.68 10.92 16 41 H 0.36 15.58 4.29 -92.71 -0.40 15.18 16 42 H 0.24 17.08 8.31 -92.71 -0.77 16.31 16 43 H 0.05 2.34 5.82 -2.39 -0.01 2.32 16 44 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -114.58 358.85 -4.74 -119.32 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -0.93 Total: 33.73 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.36 Total: 3.58 kcal Atomic # 7 Polarization: -142.57 SS G_CDS: -4.70 Total: -147.27 kcal Atomic # 8 Polarization: -137.69 SS G_CDS: -6.11 Total: -143.81 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.90 Total: 50.88 kcal Atomic # 16 Polarization: 83.83 SS G_CDS: -0.26 Total: 83.57 kcal Total: -114.58 -4.74 -119.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717260083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.468 kcal (2) G-P(sol) polarization free energy of solvation -114.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -119.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds