Wall clock time and date at job start Tue Mar 31 2020 18:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81395 * 109.47375 * 2 1 4 4 O 1.42099 * 110.54576 * 68.37328 * 3 2 1 5 5 O 1.42100 * 110.54064 * 291.62525 * 3 2 1 6 6 N 1.65602 * 104.45214 * 180.02562 * 3 2 1 7 7 C 1.46503 * 119.99961 * 64.99673 * 6 3 2 8 8 H 1.09003 * 109.47081 * 335.00048 * 7 6 3 9 9 C 1.52995 * 109.46877 * 94.99989 * 7 6 3 10 10 C 1.50701 * 109.46854 * 215.00325 * 7 6 3 11 11 O 1.21280 * 119.99991 * 359.97438 * 10 7 6 12 12 N 1.34776 * 119.99599 * 180.02562 * 10 7 6 13 13 C 1.46502 * 119.99871 * 180.02562 * 12 10 7 14 14 C 1.52998 * 109.47175 * 179.97438 * 13 12 10 15 15 O 1.42892 * 113.28172 * 313.06581 * 14 13 12 16 16 C 1.53493 * 114.20737 * 179.97438 * 14 13 12 17 17 N 1.47058 * 87.98843 * 220.34863 * 16 14 13 18 18 C 1.36939 * 136.05576 * 206.86742 * 17 16 14 19 19 H 1.07999 * 120.00262 * 6.89608 * 18 17 16 20 20 C 1.38820 * 119.99870 * 186.90334 * 18 17 16 21 21 N 1.31623 * 119.99962 * 7.45800 * 20 18 17 22 22 Si 1.86800 * 119.99890 * 187.46108 * 20 18 17 23 23 H 1.48508 * 109.46943 * 94.79809 * 22 20 18 24 24 H 1.48498 * 109.46995 * 214.79830 * 22 20 18 25 25 H 1.48493 * 109.47191 * 334.80093 * 22 20 18 26 26 C 1.47065 * 87.88764 * 27.11926 * 17 16 14 27 27 H 1.08998 * 109.47036 * 60.00210 * 1 2 3 28 28 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47144 * 299.99964 * 1 2 3 30 30 H 1.08996 * 109.46945 * 239.99621 * 2 1 3 31 31 H 1.09003 * 109.47219 * 120.00262 * 2 1 3 32 32 H 0.96994 * 119.99727 * 245.00279 * 6 3 2 33 33 H 1.09003 * 109.47216 * 60.00142 * 9 7 6 34 34 H 1.09006 * 109.46794 * 179.97438 * 9 7 6 35 35 H 1.08995 * 109.47462 * 299.99856 * 9 7 6 36 36 H 0.96999 * 120.00284 * 359.97438 * 12 10 7 37 37 H 1.08998 * 109.47428 * 59.99552 * 13 12 10 38 38 H 1.09003 * 109.46859 * 299.99549 * 13 12 10 39 39 H 0.96697 * 114.00185 * 46.93567 * 15 14 13 40 40 H 1.09000 * 113.46649 * 105.56015 * 16 14 13 41 41 H 1.09005 * 113.52085 * 335.13800 * 16 14 13 42 42 H 0.96998 * 119.99720 * 180.02562 * 21 20 18 43 43 H 1.09003 * 113.46183 * 87.65927 * 26 17 16 44 44 H 1.08992 * 113.47023 * 218.10216 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2369 5 8 1.8386 2.3437 -1.2370 6 7 3.7844 1.5652 -0.0007 7 6 4.4667 0.9671 -1.1509 8 1 3.7805 0.3012 -1.6744 9 6 4.9287 2.0732 -2.1016 10 6 5.6619 0.1829 -0.6739 11 8 5.9187 0.1293 0.5102 12 7 6.4458 -0.4581 -1.5633 13 6 7.6074 -1.2210 -1.0996 14 6 8.3200 -1.8455 -2.3008 15 8 7.4297 -2.4936 -3.2114 16 6 9.5603 -2.6731 -1.9364 17 7 10.2264 -2.0979 -3.1145 18 6 11.2262 -2.4823 -3.9677 19 1 11.6420 -3.4767 -3.8992 20 6 11.7055 -1.5937 -4.9205 21 7 11.3061 -0.3396 -4.9106 22 14 12.9170 -2.1780 -6.2167 23 1 12.1794 -2.5564 -7.4489 24 1 13.8737 -1.0858 -6.5282 25 1 13.6609 -3.3563 -5.7037 26 6 9.3507 -0.9253 -2.9695 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 4.2988 1.8763 0.7604 33 1 5.6148 2.7391 -1.5781 34 1 5.4367 1.6282 -2.9572 35 1 4.0642 2.6404 -2.4466 36 1 6.2406 -0.4150 -2.5103 37 1 7.2779 -2.0093 -0.4229 38 1 8.2934 -0.5555 -0.5754 39 1 6.6497 -1.9693 -3.4390 40 1 9.4012 -3.7489 -2.0097 41 1 10.0179 -2.3783 -0.9919 42 1 11.6407 0.2812 -5.5766 43 1 9.7519 -0.1642 -2.3002 44 1 9.0134 -0.5151 -3.9212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724454117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:37 Heat of formation + Delta-G solvation = -91.681148 kcal Electronic energy + Delta-G solvation = -27491.441510 eV Core-core repulsion = 23380.623040 eV Total energy + Delta-G solvation = -4110.818470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.32927 -38.96720 -37.47527 -36.33429 -35.80966 -35.16356 -34.19593 -33.62952 -32.11933 -30.48153 -28.56174 -26.28799 -24.91284 -24.54936 -24.25128 -22.05360 -20.71989 -19.78969 -19.51634 -18.71381 -17.85697 -16.85698 -16.74081 -16.54863 -16.18537 -15.77283 -15.52004 -15.24643 -14.73364 -14.53877 -14.18810 -13.98746 -13.85379 -13.67742 -13.55966 -13.11896 -13.00090 -12.86066 -12.71272 -12.46857 -12.35838 -12.31746 -12.13731 -12.08941 -11.99430 -11.89303 -11.22964 -11.12629 -10.90628 -10.81272 -10.53315 -10.30208 -10.02210 -9.74384 -9.57378 -9.33207 -9.02296 -8.86694 -6.97677 -5.85634 -3.15987 -0.15354 2.20752 2.34659 2.93827 3.36199 3.39733 3.41112 3.43117 3.76098 4.08207 4.18693 4.32851 4.37874 4.38040 4.44816 4.67062 4.70154 4.83031 4.94191 5.09053 5.09613 5.22052 5.23669 5.42802 5.45800 5.51142 5.60165 5.63726 5.88347 5.94260 6.14327 6.29941 6.42368 6.45147 6.59195 6.92530 6.99270 7.23034 7.40102 7.87513 7.91420 8.02605 8.96040 9.62685 10.53506 11.33287 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.002273 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.214485 B =12316.763040 C =12571.564575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.613 3.387 4 O -0.954 6.954 5 O -0.951 6.951 6 N -1.101 6.101 7 C 0.135 3.865 8 H 0.108 0.892 9 C -0.171 4.171 10 C 0.509 3.491 11 O -0.530 6.530 12 N -0.719 5.719 13 C 0.107 3.893 14 C 0.055 3.945 15 O -0.521 6.521 16 C 0.133 3.867 17 N -0.599 5.599 18 C -0.216 4.216 19 H 0.083 0.917 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.144 3.856 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.427 0.573 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.400 0.600 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.359 0.641 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.254 0.746 43 H 0.039 0.961 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.137 2.053 8.458 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.705 3.295 4 O -0.944 6.944 5 O -0.940 6.940 6 N -0.861 5.861 7 C 0.023 3.977 8 H 0.125 0.875 9 C -0.230 4.230 10 C 0.293 3.707 11 O -0.406 6.406 12 N -0.373 5.373 13 C -0.017 4.017 14 C 0.012 3.988 15 O -0.325 6.325 16 C 0.006 3.994 17 N -0.324 5.324 18 C -0.343 4.343 19 H 0.101 0.899 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.745 3.255 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.018 3.982 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.264 0.736 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.235 0.765 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.205 0.795 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.783 2.293 8.925 22.734 hybrid contribution 0.723 -0.408 -0.828 1.173 sum -20.060 1.885 8.097 21.715 Atomic orbital electron populations 1.21504 0.90271 1.05241 1.03526 1.30539 1.07474 1.26529 1.11936 1.05038 0.72747 0.77274 0.74486 1.93621 1.82796 1.72980 1.45019 1.93619 1.83176 1.71851 1.45394 1.55489 1.25811 1.77024 1.27759 1.20650 0.94214 0.95601 0.87222 0.87471 1.22324 1.03634 0.98465 0.98606 1.20581 0.84200 0.79389 0.86567 1.90714 1.72013 1.61521 1.16375 1.45927 1.28907 1.52056 1.10371 1.21991 0.86868 0.95314 0.97568 1.23454 0.89426 0.97404 0.88491 1.86661 1.35818 1.44804 1.65187 1.22382 0.87512 0.97443 0.92027 1.45368 1.41285 1.17923 1.27805 1.18924 1.10223 0.97018 1.08129 0.89946 1.24821 1.00101 0.95306 1.00159 1.69840 1.47675 1.02592 1.36594 0.86056 0.80246 0.77500 0.81685 1.21491 1.21692 1.20508 1.22627 0.86780 0.90487 0.98320 0.90821 0.89877 0.90904 0.85104 0.84610 0.73608 0.91008 0.90423 0.89495 0.76487 0.90823 0.89891 0.79482 0.93015 0.93334 0.93606 0.94385 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.92 37.16 0.37 -0.35 16 2 C -0.64 -3.32 6.68 37.16 0.25 -3.07 16 3 S 2.61 21.38 5.38 -107.50 -0.58 20.81 16 4 O -0.95 -11.07 18.08 -57.54 -1.04 -12.11 16 5 O -0.95 -10.03 17.11 -57.54 -0.98 -11.01 16 6 N -1.10 -9.10 5.15 -5.88 -0.03 -9.13 16 7 C 0.13 1.05 3.09 -69.08 -0.21 0.84 16 8 H 0.11 0.48 7.15 -51.93 -0.37 0.11 16 9 C -0.17 -1.33 9.41 37.16 0.35 -0.98 16 10 C 0.51 5.44 7.22 -10.99 -0.08 5.36 16 11 O -0.53 -7.48 15.99 5.56 0.09 -7.39 16 12 N -0.72 -7.43 5.23 -60.29 -0.32 -7.75 16 13 C 0.11 1.42 5.42 -4.04 -0.02 1.40 16 14 C 0.06 0.92 1.73 -90.11 -0.16 0.77 16 15 O -0.52 -8.54 13.56 -35.23 -0.48 -9.02 16 16 C 0.13 2.63 8.11 -8.52 -0.07 2.56 16 17 N -0.60 -15.02 3.76 -184.76 -0.70 -15.72 16 18 C -0.22 -6.00 10.73 -15.06 -0.16 -6.16 16 19 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.77 11.86 55.49 0.66 -26.11 16 22 Si 0.91 21.90 29.56 -169.99 -5.02 16.87 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.14 3.13 6.64 -8.51 -0.06 3.08 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.13 0.44 7.44 -51.93 -0.39 0.06 16 31 H 0.14 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.43 3.74 8.17 -34.47 -0.28 3.45 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.50 7.56 -51.93 -0.39 0.11 16 35 H 0.09 0.70 7.42 -51.93 -0.39 0.31 16 36 H 0.40 3.20 6.36 -40.82 -0.26 2.94 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.18 7.90 -51.93 -0.41 0.77 16 39 H 0.36 4.03 7.20 45.56 0.33 4.36 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.04 0.85 7.93 -51.93 -0.41 0.44 16 44 H 0.06 1.53 7.63 -51.93 -0.40 1.14 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -38.41 377.47 -8.49 -46.90 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.89 Total: 4.83 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 0.11 Total: 3.14 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.38 Total: -58.70 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -2.41 Total: -39.53 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 21.38 SS G_CDS: -0.58 Total: 20.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.41 -8.49 -46.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724454117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.783 kcal (2) G-P(sol) polarization free energy of solvation -38.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds