Wall clock time and date at job start Tue Mar 31 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81395 * 109.47375 * 2 1 4 4 O 1.42099 * 110.54576 * 68.37328 * 3 2 1 5 5 O 1.42100 * 110.54064 * 291.62525 * 3 2 1 6 6 N 1.65602 * 104.45214 * 180.02562 * 3 2 1 7 7 C 1.46503 * 119.99961 * 64.99673 * 6 3 2 8 8 H 1.09003 * 109.47081 * 335.00048 * 7 6 3 9 9 C 1.52995 * 109.46877 * 94.99989 * 7 6 3 10 10 C 1.50701 * 109.46854 * 215.00325 * 7 6 3 11 11 O 1.21280 * 119.99991 * 359.97438 * 10 7 6 12 12 N 1.34776 * 119.99599 * 180.02562 * 10 7 6 13 13 C 1.46502 * 119.99871 * 180.02562 * 12 10 7 14 14 C 1.52998 * 109.47175 * 179.97438 * 13 12 10 15 15 O 1.42892 * 113.28172 * 313.06581 * 14 13 12 16 16 C 1.53493 * 114.20737 * 179.97438 * 14 13 12 17 17 N 1.47058 * 87.98843 * 220.34863 * 16 14 13 18 18 C 1.36939 * 136.05576 * 206.86742 * 17 16 14 19 19 H 1.07999 * 120.00262 * 6.89608 * 18 17 16 20 20 C 1.38820 * 119.99870 * 186.90334 * 18 17 16 21 21 N 1.31623 * 119.99962 * 7.45800 * 20 18 17 22 22 Si 1.86800 * 119.99890 * 187.46108 * 20 18 17 23 23 H 1.48508 * 109.46943 * 94.79809 * 22 20 18 24 24 H 1.48498 * 109.46995 * 214.79830 * 22 20 18 25 25 H 1.48493 * 109.47191 * 334.80093 * 22 20 18 26 26 C 1.47065 * 87.88764 * 27.11926 * 17 16 14 27 27 H 1.08998 * 109.47036 * 60.00210 * 1 2 3 28 28 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47144 * 299.99964 * 1 2 3 30 30 H 1.08996 * 109.46945 * 239.99621 * 2 1 3 31 31 H 1.09003 * 109.47219 * 120.00262 * 2 1 3 32 32 H 0.96994 * 119.99727 * 245.00279 * 6 3 2 33 33 H 1.09003 * 109.47216 * 60.00142 * 9 7 6 34 34 H 1.09006 * 109.46794 * 179.97438 * 9 7 6 35 35 H 1.08995 * 109.47462 * 299.99856 * 9 7 6 36 36 H 0.96999 * 120.00284 * 359.97438 * 12 10 7 37 37 H 1.08998 * 109.47428 * 59.99552 * 13 12 10 38 38 H 1.09003 * 109.46859 * 299.99549 * 13 12 10 39 39 H 0.96697 * 114.00185 * 46.93567 * 15 14 13 40 40 H 1.09000 * 113.46649 * 105.56015 * 16 14 13 41 41 H 1.09005 * 113.52085 * 335.13800 * 16 14 13 42 42 H 0.96998 * 119.99720 * 180.02562 * 21 20 18 43 43 H 1.09003 * 113.46183 * 87.65927 * 26 17 16 44 44 H 1.08992 * 113.47023 * 218.10216 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2369 5 8 1.8386 2.3437 -1.2370 6 7 3.7844 1.5652 -0.0007 7 6 4.4667 0.9671 -1.1509 8 1 3.7805 0.3012 -1.6744 9 6 4.9287 2.0732 -2.1016 10 6 5.6619 0.1829 -0.6739 11 8 5.9187 0.1293 0.5102 12 7 6.4458 -0.4581 -1.5633 13 6 7.6074 -1.2210 -1.0996 14 6 8.3200 -1.8455 -2.3008 15 8 7.4297 -2.4936 -3.2114 16 6 9.5603 -2.6731 -1.9364 17 7 10.2264 -2.0979 -3.1145 18 6 11.2262 -2.4823 -3.9677 19 1 11.6420 -3.4767 -3.8992 20 6 11.7055 -1.5937 -4.9205 21 7 11.3061 -0.3396 -4.9106 22 14 12.9170 -2.1780 -6.2167 23 1 12.1794 -2.5564 -7.4489 24 1 13.8737 -1.0858 -6.5282 25 1 13.6609 -3.3563 -5.7037 26 6 9.3507 -0.9253 -2.9695 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 4.2988 1.8763 0.7604 33 1 5.6148 2.7391 -1.5781 34 1 5.4367 1.6282 -2.9572 35 1 4.0642 2.6404 -2.4466 36 1 6.2406 -0.4150 -2.5103 37 1 7.2779 -2.0093 -0.4229 38 1 8.2934 -0.5555 -0.5754 39 1 6.6497 -1.9693 -3.4390 40 1 9.4012 -3.7489 -2.0097 41 1 10.0179 -2.3783 -0.9919 42 1 11.6407 0.2812 -5.5766 43 1 9.7519 -0.1642 -2.3002 44 1 9.0134 -0.5151 -3.9212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724454117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:36 Heat of formation + Delta-G solvation = -126.699490 kcal Electronic energy + Delta-G solvation = -27492.960020 eV Core-core repulsion = 23380.623040 eV Total energy + Delta-G solvation = -4112.336979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36028 -40.32283 -38.21823 -37.07088 -36.70625 -36.40241 -35.30144 -34.08278 -34.02409 -31.30212 -30.00600 -27.79230 -26.55540 -25.20894 -24.94988 -23.65388 -21.58675 -21.02396 -20.40583 -19.54099 -18.86203 -18.45759 -17.49492 -17.36920 -17.19282 -17.00424 -16.46054 -16.42418 -15.87202 -15.78888 -15.32282 -15.09775 -14.93503 -14.79400 -14.37491 -14.22726 -14.05171 -13.83387 -13.52702 -13.41206 -13.37162 -13.23361 -13.11793 -13.03914 -12.80466 -12.79779 -12.67698 -12.51988 -12.36880 -12.21962 -11.78731 -11.69020 -11.37357 -11.00693 -10.91685 -10.67946 -10.50698 -10.15217 -8.95117 -7.94878 -5.25500 -0.75982 1.45785 1.47560 1.49806 1.56216 1.57174 2.09543 2.46124 2.80141 3.05203 3.20372 3.29262 3.33911 3.45318 3.60706 3.72972 3.81485 3.92111 3.95313 4.03580 4.28250 4.40980 4.41256 4.71180 4.73160 4.76855 4.80048 4.85074 4.86772 4.94929 4.99688 5.14001 5.15262 5.25528 5.29944 5.33023 5.46610 5.89080 5.90729 6.41062 6.85538 6.89619 7.12155 7.57082 8.56527 9.23857 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.002273 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.214485 B =12316.763040 C =12571.564575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.616 4.616 3 S 2.617 3.383 4 O -0.995 6.995 5 O -0.979 6.979 6 N -1.105 6.105 7 C 0.135 3.865 8 H 0.149 0.851 9 C -0.174 4.174 10 C 0.513 3.487 11 O -0.564 6.564 12 N -0.711 5.711 13 C 0.122 3.878 14 C 0.097 3.903 15 O -0.535 6.535 16 C 0.125 3.875 17 N -0.636 5.636 18 C -0.228 4.228 19 H 0.083 0.917 20 C -0.065 4.065 21 N -0.951 5.951 22 Si 0.980 3.020 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.142 3.858 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.423 0.577 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.413 0.587 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.384 0.616 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.249 0.751 43 H 0.027 0.973 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.567 0.408 8.296 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.749 4.749 3 S 2.713 3.287 4 O -0.986 6.986 5 O -0.969 6.969 6 N -0.863 5.863 7 C 0.024 3.976 8 H 0.166 0.834 9 C -0.233 4.233 10 C 0.298 3.702 11 O -0.442 6.442 12 N -0.366 5.366 13 C -0.003 4.003 14 C 0.054 3.946 15 O -0.342 6.342 16 C -0.001 4.001 17 N -0.361 5.361 18 C -0.357 4.357 19 H 0.100 0.900 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.192 1.192 26 C 0.016 3.984 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.177 0.823 31 H 0.167 0.833 32 H 0.259 0.741 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.233 0.767 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.243 0.675 8.762 23.916 hybrid contribution 1.107 0.043 -0.744 1.335 sum -21.136 0.718 8.017 22.616 Atomic orbital electron populations 1.21688 0.89920 1.06500 1.03808 1.30373 1.07700 1.22756 1.14052 1.04763 0.72350 0.78560 0.73011 1.93564 1.83317 1.75183 1.46526 1.93579 1.83460 1.73852 1.46023 1.55441 1.25789 1.77273 1.27815 1.20826 0.93848 0.95803 0.87098 0.83381 1.22360 1.03460 0.98430 0.99014 1.20998 0.84453 0.78777 0.85924 1.90709 1.72927 1.62672 1.17932 1.45785 1.27947 1.51676 1.11191 1.21641 0.87469 0.95613 0.95588 1.22776 0.88748 0.94379 0.88723 1.86609 1.36803 1.45507 1.65250 1.22622 0.88431 0.97966 0.91055 1.45753 1.41222 1.19687 1.29447 1.19284 1.10542 0.97131 1.08697 0.89963 1.25635 1.02356 0.95546 1.02323 1.70002 1.49148 1.03521 1.37292 0.85045 0.78060 0.77136 0.78990 1.21325 1.22053 1.19248 1.22645 0.88203 0.90352 0.97237 0.90383 0.88013 0.91125 0.82323 0.83282 0.74073 0.92322 0.88884 0.89650 0.74951 0.89506 0.90793 0.76660 0.92709 0.91531 0.94197 0.95492 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.92 71.98 0.71 -0.43 16 2 C -0.62 -4.47 6.68 71.98 0.48 -3.99 16 3 S 2.62 39.78 5.38 -56.49 -0.30 39.47 16 4 O -1.00 -23.17 18.08 -127.65 -2.31 -25.47 16 5 O -0.98 -19.67 17.11 -127.65 -2.18 -21.86 16 6 N -1.10 -16.82 5.15 -172.52 -0.89 -17.71 16 7 C 0.14 1.79 3.09 44.24 0.14 1.92 16 8 H 0.15 0.71 7.15 -2.39 -0.02 0.69 16 9 C -0.17 -2.43 9.41 71.98 0.68 -1.75 16 10 C 0.51 9.77 7.22 87.66 0.63 10.40 16 11 O -0.56 -14.98 15.99 -3.03 -0.05 -15.02 16 12 N -0.71 -12.83 5.23 -463.06 -2.42 -15.25 16 13 C 0.12 2.97 5.42 86.38 0.47 3.44 16 14 C 0.10 3.08 1.73 -10.46 -0.02 3.07 16 15 O -0.53 -16.22 13.56 -148.98 -2.02 -18.24 16 16 C 0.12 4.79 8.11 83.18 0.67 5.47 16 17 N -0.64 -31.98 3.76 -738.95 -2.78 -34.76 16 18 C -0.23 -12.80 10.73 84.04 0.90 -11.89 16 19 H 0.08 4.44 7.84 -2.91 -0.02 4.42 16 20 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 21 N -0.95 -56.43 11.86 21.65 0.26 -56.17 16 22 Si 0.98 45.36 29.56 68.60 2.03 47.39 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 C 0.14 6.19 6.64 83.18 0.55 6.74 16 27 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.16 0.31 7.44 -2.39 -0.02 0.30 16 31 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.42 7.26 8.17 -96.75 -0.79 6.47 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 0.99 7.56 -2.38 -0.02 0.97 16 35 H 0.08 1.26 7.42 -2.39 -0.02 1.25 16 36 H 0.41 5.33 6.36 -92.71 -0.59 4.74 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.00 7.90 -2.39 -0.02 1.98 16 39 H 0.38 7.36 7.20 -74.06 -0.53 6.83 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.34 8.11 -2.38 -0.02 2.32 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.03 1.23 7.93 -2.39 -0.02 1.21 16 44 H 0.04 1.75 7.63 -2.39 -0.02 1.73 16 Total: -1.00 -84.71 377.47 -5.86 -90.57 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.87 Total: 17.31 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.69 Total: 9.75 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -5.84 Total: -123.89 kcal Atomic # 8 Polarization: -74.04 SS G_CDS: -6.56 Total: -80.60 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 39.78 SS G_CDS: -0.30 Total: 39.47 kcal Total: -84.71 -5.86 -90.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724454117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.134 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds