Wall clock time and date at job start Tue Mar 31 2020 18:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00020 * 2 1 4 4 C 1.52999 * 109.47070 * 269.99745 * 3 2 1 5 5 H 1.08996 * 109.46807 * 60.00584 * 4 3 2 6 6 O 1.42893 * 109.47513 * 299.99888 * 4 3 2 7 7 C 1.53007 * 109.46866 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.46970 * 185.00568 * 7 4 3 9 9 C 1.36939 * 120.00213 * 179.72951 * 8 7 4 10 10 H 1.07997 * 119.99587 * 0.26685 * 9 8 7 11 11 C 1.38806 * 120.00205 * 180.27488 * 9 8 7 12 12 N 1.31624 * 120.00024 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47531 * 89.99357 * 13 11 9 15 15 H 1.48495 * 109.47207 * 209.99745 * 13 11 9 16 16 H 1.48501 * 109.46843 * 329.99423 * 13 11 9 17 17 C 1.34777 * 120.00081 * 180.02562 * 2 1 3 18 18 O 1.21490 * 120.00259 * 175.97156 * 17 2 1 19 19 C 1.48347 * 119.99599 * 355.96668 * 17 2 1 20 20 C 1.41718 * 126.80862 * 185.79797 * 19 17 2 21 21 C 1.37163 * 103.79817 * 179.97438 * 20 19 17 22 22 C 1.47006 * 126.85956 * 179.97438 * 21 20 19 23 23 C 1.36345 * 125.96144 * 180.02562 * 22 21 20 24 24 C 1.40702 * 106.71476 * 179.97438 * 23 22 21 25 25 C 1.34889 * 107.08599 * 359.97438 * 24 23 22 26 26 O 1.34233 * 108.72735 * 359.77641 * 25 24 23 27 27 O 1.34587 * 106.27503 * 359.97438 * 21 20 19 28 28 N 1.20874 * 111.69586 * 359.73150 * 27 21 20 29 29 H 1.09003 * 109.46900 * 95.63843 * 1 2 3 30 30 H 1.08997 * 109.46986 * 215.63836 * 1 2 3 31 31 H 1.08998 * 109.46637 * 335.64417 * 1 2 3 32 32 H 1.09001 * 109.47093 * 149.99971 * 3 2 1 33 33 H 1.08999 * 109.47442 * 30.00054 * 3 2 1 34 34 H 0.96698 * 114.00211 * 300.00330 * 6 4 3 35 35 H 1.08995 * 109.47055 * 65.00251 * 7 4 3 36 36 H 1.09001 * 109.47441 * 305.00242 * 7 4 3 37 37 H 0.97007 * 119.99940 * 359.97438 * 8 7 4 38 38 H 0.96997 * 119.99396 * 180.02562 * 12 11 9 39 39 H 1.08001 * 128.10263 * 359.94724 * 20 19 17 40 40 H 1.08000 * 126.64024 * 359.94343 * 23 22 21 41 41 H 1.08006 * 126.45248 * 179.97438 * 24 23 22 42 42 H 1.07995 * 125.63443 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2249 0.7145 -2.1161 7 6 3.2171 3.0357 -1.4424 8 7 3.3569 3.5188 -2.8184 9 6 4.0058 4.6987 -3.0672 10 1 4.4183 5.2710 -2.2495 11 6 4.1333 5.1593 -4.3704 12 7 3.6309 4.4617 -5.3671 13 14 5.0180 6.7692 -4.7097 14 1 6.4631 6.5041 -4.9256 15 1 4.4442 7.4029 -5.9239 16 1 4.8498 7.6805 -3.5493 17 6 2.1389 -1.1672 -0.0005 18 8 3.3516 -1.1685 -0.0744 19 6 1.3999 -2.4503 0.0893 20 6 1.9602 -3.7459 0.2151 21 6 0.8666 -4.5727 0.2569 22 6 0.8727 -6.0374 0.3820 23 6 -0.2272 -6.8422 0.4213 24 6 0.2420 -8.1629 0.5458 25 6 1.5892 -8.1037 0.5758 26 8 1.9666 -6.8197 0.4714 27 8 -0.2132 -3.7750 0.1606 28 7 0.0980 -2.6102 0.0747 29 1 -0.3633 -0.1010 -1.0227 30 1 -0.3633 -0.8352 0.5988 31 1 -0.3632 0.9362 0.4238 32 1 3.1499 1.1384 0.5138 33 1 1.6085 2.0284 0.5138 34 1 4.0873 0.5460 -1.7126 35 1 4.2053 2.8851 -1.0080 36 1 2.6693 3.7711 -0.8531 37 1 2.9866 3.0047 -3.5530 38 1 3.7204 4.7835 -6.2778 39 1 3.0040 -4.0186 0.2656 40 1 -1.2588 -6.5270 0.3678 41 1 -0.3628 -9.0557 0.6061 42 1 2.2544 -8.9498 0.6646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734522699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:19 Heat of formation + Delta-G solvation = 31.909131 kcal Electronic energy + Delta-G solvation = -27805.561992 eV Core-core repulsion = 23564.658847 eV Total energy + Delta-G solvation = -4240.903145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.42866 -43.07348 -40.01779 -37.31199 -35.47708 -34.42065 -33.95794 -33.84574 -33.05727 -31.27579 -29.60774 -29.17076 -27.02661 -26.18232 -24.27677 -23.84093 -22.84812 -22.02253 -21.76643 -21.10190 -19.82926 -18.59967 -18.27405 -17.45128 -17.12687 -16.87095 -16.57271 -16.52552 -15.90992 -15.42226 -15.06278 -14.81318 -14.38492 -14.35560 -13.80517 -13.61992 -13.47635 -13.31113 -13.18833 -13.10383 -12.88390 -12.79102 -12.41078 -12.13297 -11.65022 -11.45124 -11.00617 -10.92103 -10.83605 -10.79126 -10.69060 -10.42409 -10.31630 -10.13612 -9.75391 -9.62392 -8.86759 -8.69002 -8.58604 -6.88990 -5.71879 -3.01396 0.17737 0.99525 1.54418 1.66294 2.23744 2.59682 2.98560 3.18489 3.46031 3.50360 3.52557 3.54648 3.84424 4.36588 4.40889 4.46524 4.58336 4.61284 4.81200 4.86690 5.02538 5.04632 5.20238 5.27687 5.28943 5.40015 5.44543 5.47187 5.55538 5.64342 5.72231 5.73932 5.84831 6.00595 6.23391 6.37357 6.41976 6.54559 6.75950 7.10319 7.52342 7.71506 7.91878 8.23207 8.46346 9.57469 10.15630 10.51203 11.50556 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028734 B = 0.001911 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.234477 B =14650.810770 C =14978.693401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.591 5.591 3 C 0.085 3.915 4 C 0.085 3.915 5 H 0.097 0.903 6 O -0.547 6.547 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.600 3.400 18 O -0.512 6.512 19 C -0.007 4.007 20 C -0.150 4.150 21 C 0.037 3.963 22 C 0.041 3.959 23 C -0.156 4.156 24 C -0.215 4.215 25 C -0.013 4.013 26 O -0.158 6.158 27 O 0.135 5.865 28 N -0.319 5.319 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.375 0.625 35 H 0.022 0.978 36 H 0.025 0.975 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.188 0.812 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.256 -26.361 17.317 33.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.324 5.324 3 C -0.037 4.037 4 C 0.025 3.975 5 H 0.115 0.885 6 O -0.352 6.352 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.385 3.615 18 O -0.386 6.386 19 C -0.164 4.164 20 C -0.172 4.172 21 C -0.027 4.027 22 C -0.010 4.010 23 C -0.176 4.176 24 C -0.234 4.234 25 C -0.082 4.082 26 O -0.053 6.053 27 O 0.059 5.941 28 N -0.020 5.020 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.222 0.778 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.223 0.777 38 H 0.065 0.935 39 H 0.205 0.795 40 H 0.178 0.822 41 H 0.175 0.825 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -10.726 -25.147 16.808 32.092 hybrid contribution 1.241 0.330 -0.135 1.291 sum -9.484 -24.817 16.672 31.366 Atomic orbital electron populations 1.22198 0.78508 1.03694 1.03063 1.47533 1.07550 1.05502 1.71786 1.22414 0.98244 0.83841 0.99243 1.22499 0.95906 0.88429 0.90704 0.88538 1.86553 1.33122 1.58840 1.56729 1.21235 0.96787 0.92382 0.89811 1.42248 1.68281 1.25066 1.01397 1.19224 1.28316 0.97596 0.92225 0.91240 1.24770 1.01538 0.99056 0.95635 1.69688 1.50314 1.39195 0.98633 0.86173 0.79294 0.83253 0.77346 1.21707 1.21764 1.20788 1.16755 0.86182 0.81231 0.77376 1.90776 1.12506 1.86057 1.49269 1.23370 0.89676 0.97013 1.06388 1.22736 1.01302 0.89333 1.03866 1.20436 0.86497 0.89386 1.06334 1.18053 0.85188 0.86530 1.11184 1.22014 0.99422 0.92434 1.03751 1.21841 0.94746 0.98396 1.08384 1.24386 0.96524 0.83573 1.03687 1.84076 1.33220 1.17338 1.70684 1.84946 1.31811 1.11449 1.65909 1.74337 1.15693 0.95434 1.16568 0.91959 0.89404 0.90510 0.89209 0.89057 0.77782 0.96045 0.95736 0.77739 0.93510 0.79497 0.82161 0.82460 0.77005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 9.74 59.85 0.58 1.31 16 2 N -0.59 -7.83 2.83 -182.50 -0.52 -8.34 16 3 C 0.09 1.14 5.18 -4.04 -0.02 1.12 16 4 C 0.09 1.48 3.27 -26.73 -0.09 1.39 16 5 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 6 O -0.55 -10.72 12.01 -48.19 -0.58 -11.30 16 7 C 0.13 2.58 5.90 -4.04 -0.02 2.56 16 8 N -0.73 -19.23 5.55 -59.91 -0.33 -19.57 16 9 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -29.23 13.06 55.49 0.72 -28.51 16 13 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.60 8.81 7.26 -12.10 -0.09 8.72 16 18 O -0.51 -8.67 15.09 -7.58 -0.11 -8.79 16 19 C -0.01 -0.09 6.86 -82.66 -0.57 -0.66 16 20 C -0.15 -1.65 10.97 -38.64 -0.42 -2.08 16 21 C 0.04 0.36 7.30 -36.42 -0.27 0.09 16 22 C 0.04 0.35 7.17 -36.71 -0.26 0.08 16 23 C -0.16 -1.03 10.86 -39.33 -0.43 -1.46 16 24 C -0.21 -1.07 10.88 -39.84 -0.43 -1.51 16 25 C -0.01 -0.06 12.08 29.54 0.36 0.29 16 26 O -0.16 -1.26 10.67 4.56 0.05 -1.21 16 27 O 0.13 1.35 11.21 15.71 0.18 1.53 16 28 N -0.32 -3.65 8.64 33.36 0.29 -3.36 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.89 5.29 -51.93 -0.27 0.62 16 31 H 0.08 0.65 7.83 -51.93 -0.41 0.25 16 32 H 0.09 1.22 7.48 -51.93 -0.39 0.83 16 33 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 34 H 0.37 6.83 8.33 45.56 0.38 7.21 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.39 11.13 7.67 -40.82 -0.31 10.82 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 39 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.16 0.41 8.06 -52.48 -0.42 -0.02 16 42 H 0.21 0.18 8.06 -52.49 -0.42 -0.24 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -35.80 368.27 -6.02 -41.83 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.34 Total: 12.05 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.91 Total: 2.19 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.16 Total: -59.78 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.47 Total: -19.78 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.80 -6.02 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734522699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.734 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds