Wall clock time and date at job start Tue Mar 31 2020 18:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00020 * 2 1 4 4 C 1.52999 * 109.47070 * 269.99745 * 3 2 1 5 5 H 1.08996 * 109.46807 * 60.00584 * 4 3 2 6 6 O 1.42893 * 109.47513 * 299.99888 * 4 3 2 7 7 C 1.53007 * 109.46866 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.46970 * 185.00568 * 7 4 3 9 9 C 1.36939 * 120.00213 * 179.72951 * 8 7 4 10 10 H 1.07997 * 119.99587 * 0.26685 * 9 8 7 11 11 C 1.38806 * 120.00205 * 180.27488 * 9 8 7 12 12 N 1.31624 * 120.00024 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47531 * 89.99357 * 13 11 9 15 15 H 1.48495 * 109.47207 * 209.99745 * 13 11 9 16 16 H 1.48501 * 109.46843 * 329.99423 * 13 11 9 17 17 C 1.34777 * 120.00081 * 180.02562 * 2 1 3 18 18 O 1.21490 * 120.00259 * 175.97156 * 17 2 1 19 19 C 1.48347 * 119.99599 * 355.96668 * 17 2 1 20 20 C 1.41718 * 126.80862 * 185.79797 * 19 17 2 21 21 C 1.37163 * 103.79817 * 179.97438 * 20 19 17 22 22 C 1.47006 * 126.85956 * 179.97438 * 21 20 19 23 23 C 1.36345 * 125.96144 * 180.02562 * 22 21 20 24 24 C 1.40702 * 106.71476 * 179.97438 * 23 22 21 25 25 C 1.34889 * 107.08599 * 359.97438 * 24 23 22 26 26 O 1.34233 * 108.72735 * 359.77641 * 25 24 23 27 27 O 1.34587 * 106.27503 * 359.97438 * 21 20 19 28 28 N 1.20874 * 111.69586 * 359.73150 * 27 21 20 29 29 H 1.09003 * 109.46900 * 95.63843 * 1 2 3 30 30 H 1.08997 * 109.46986 * 215.63836 * 1 2 3 31 31 H 1.08998 * 109.46637 * 335.64417 * 1 2 3 32 32 H 1.09001 * 109.47093 * 149.99971 * 3 2 1 33 33 H 1.08999 * 109.47442 * 30.00054 * 3 2 1 34 34 H 0.96698 * 114.00211 * 300.00330 * 6 4 3 35 35 H 1.08995 * 109.47055 * 65.00251 * 7 4 3 36 36 H 1.09001 * 109.47441 * 305.00242 * 7 4 3 37 37 H 0.97007 * 119.99940 * 359.97438 * 8 7 4 38 38 H 0.96997 * 119.99396 * 180.02562 * 12 11 9 39 39 H 1.08001 * 128.10263 * 359.94724 * 20 19 17 40 40 H 1.08000 * 126.64024 * 359.94343 * 23 22 21 41 41 H 1.08006 * 126.45248 * 179.97438 * 24 23 22 42 42 H 1.07995 * 125.63443 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2249 0.7145 -2.1161 7 6 3.2171 3.0357 -1.4424 8 7 3.3569 3.5188 -2.8184 9 6 4.0058 4.6987 -3.0672 10 1 4.4183 5.2710 -2.2495 11 6 4.1333 5.1593 -4.3704 12 7 3.6309 4.4617 -5.3671 13 14 5.0180 6.7692 -4.7097 14 1 6.4631 6.5041 -4.9256 15 1 4.4442 7.4029 -5.9239 16 1 4.8498 7.6805 -3.5493 17 6 2.1389 -1.1672 -0.0005 18 8 3.3516 -1.1685 -0.0744 19 6 1.3999 -2.4503 0.0893 20 6 1.9602 -3.7459 0.2151 21 6 0.8666 -4.5727 0.2569 22 6 0.8727 -6.0374 0.3820 23 6 -0.2272 -6.8422 0.4213 24 6 0.2420 -8.1629 0.5458 25 6 1.5892 -8.1037 0.5758 26 8 1.9666 -6.8197 0.4714 27 8 -0.2132 -3.7750 0.1606 28 7 0.0980 -2.6102 0.0747 29 1 -0.3633 -0.1010 -1.0227 30 1 -0.3633 -0.8352 0.5988 31 1 -0.3632 0.9362 0.4238 32 1 3.1499 1.1384 0.5138 33 1 1.6085 2.0284 0.5138 34 1 4.0873 0.5460 -1.7126 35 1 4.2053 2.8851 -1.0080 36 1 2.6693 3.7711 -0.8531 37 1 2.9866 3.0047 -3.5530 38 1 3.7204 4.7835 -6.2778 39 1 3.0040 -4.0186 0.2656 40 1 -1.2588 -6.5270 0.3678 41 1 -0.3628 -9.0557 0.6061 42 1 2.2544 -8.9498 0.6646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734522699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:19 Heat of formation + Delta-G solvation = 5.821977 kcal Electronic energy + Delta-G solvation = -27806.693216 eV Core-core repulsion = 23564.658847 eV Total energy + Delta-G solvation = -4242.034369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.27763 -43.55353 -41.14369 -38.75857 -36.66770 -35.93830 -35.26062 -34.45785 -33.70204 -33.21693 -31.03081 -29.83255 -28.09990 -27.60402 -25.67473 -24.56111 -24.27791 -22.97981 -22.50654 -22.32305 -20.60264 -19.42114 -19.25664 -19.11618 -18.40020 -17.89100 -17.51213 -17.12317 -17.01079 -16.60516 -16.52237 -16.16079 -15.87771 -15.34486 -15.14904 -14.99280 -14.61318 -14.28736 -14.10158 -13.89405 -13.84722 -13.75717 -13.67108 -13.36912 -12.99625 -12.80316 -12.72133 -12.42542 -12.19825 -12.08741 -11.84421 -11.75479 -11.69605 -11.48408 -11.12820 -10.99214 -10.88393 -9.76242 -9.24162 -9.03460 -7.96204 -5.26587 -0.51573 0.08151 0.91404 1.13512 1.45364 1.48520 1.56617 1.58831 1.71958 1.93794 2.53903 2.60028 2.62892 3.11141 3.34983 3.46866 3.63494 3.68582 3.76194 3.94115 4.00245 4.01922 4.13445 4.21650 4.24665 4.43068 4.47612 4.57784 4.61345 4.67632 4.76319 4.89919 4.90159 4.94761 5.00512 5.19783 5.29196 5.45970 5.47490 5.95905 6.05209 6.24285 6.65105 6.77038 6.87556 7.30442 8.06344 8.29119 9.27401 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028734 B = 0.001911 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.234477 B =14650.810770 C =14978.693401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.591 5.591 3 C 0.095 3.905 4 C 0.094 3.906 5 H 0.088 0.912 6 O -0.568 6.568 7 C 0.125 3.875 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.080 0.920 11 C -0.080 4.080 12 N -0.972 5.972 13 Si 0.979 3.021 14 H -0.288 1.288 15 H -0.295 1.295 16 H -0.265 1.265 17 C 0.592 3.408 18 O -0.544 6.544 19 C -0.025 4.025 20 C -0.170 4.170 21 C 0.056 3.944 22 C 0.000 4.000 23 C -0.145 4.145 24 C -0.224 4.224 25 C -0.001 4.001 26 O -0.177 6.177 27 O 0.144 5.856 28 N -0.322 5.322 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.378 0.622 35 H 0.026 0.974 36 H 0.045 0.955 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.190 0.810 40 H 0.175 0.825 41 H 0.184 0.816 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 -27.400 19.008 35.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.322 5.322 3 C -0.028 4.028 4 C 0.033 3.967 5 H 0.106 0.894 6 O -0.374 6.374 7 C -0.002 4.002 8 N -0.385 5.385 9 C -0.380 4.380 10 H 0.098 0.902 11 C -0.272 4.272 12 N -0.622 5.622 13 Si 0.808 3.192 14 H -0.215 1.215 15 H -0.221 1.221 16 H -0.190 1.190 17 C 0.378 3.622 18 O -0.420 6.420 19 C -0.181 4.181 20 C -0.192 4.192 21 C -0.007 4.007 22 C -0.050 4.050 23 C -0.165 4.165 24 C -0.243 4.243 25 C -0.069 4.069 26 O -0.073 6.073 27 O 0.067 5.933 28 N -0.023 5.023 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.226 0.774 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.204 0.796 38 H 0.060 0.940 39 H 0.208 0.792 40 H 0.193 0.807 41 H 0.202 0.798 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -11.568 -26.169 18.561 34.105 hybrid contribution 1.427 0.426 -0.592 1.602 sum -10.141 -25.743 17.970 32.991 Atomic orbital electron populations 1.22346 0.76860 1.05438 1.02897 1.47631 1.08582 1.04994 1.70994 1.22287 0.99241 0.84806 0.96433 1.22435 0.94529 0.86657 0.93031 0.89447 1.86526 1.33613 1.59415 1.57854 1.21437 0.97625 0.94221 0.86952 1.42479 1.68081 1.24539 1.03374 1.19695 1.27423 0.98234 0.92603 0.90223 1.25683 1.03095 1.02877 0.95577 1.69866 1.52364 1.41212 0.98775 0.85054 0.77682 0.79163 0.77323 1.21519 1.22137 1.18965 1.17093 0.86071 0.82172 0.76839 1.90743 1.13824 1.86676 1.50804 1.23212 0.90254 0.96747 1.07929 1.22796 1.01934 0.89058 1.05453 1.20596 0.85695 0.90129 1.04325 1.18062 0.86133 0.85996 1.14777 1.22398 0.99678 0.93064 1.01322 1.22226 0.95132 0.98560 1.08337 1.25304 0.97520 0.83204 1.00919 1.84074 1.33581 1.18545 1.71150 1.84910 1.31808 1.11157 1.65413 1.74303 1.15059 0.96062 1.16837 0.92815 0.88870 0.87823 0.89267 0.85646 0.77416 0.95657 0.93761 0.79556 0.94044 0.79234 0.80735 0.79819 0.73282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 9.74 127.77 1.24 2.58 16 2 N -0.59 -15.27 2.83 -849.62 -2.40 -17.68 16 3 C 0.10 2.43 5.18 86.38 0.45 2.88 16 4 C 0.09 3.22 3.27 30.60 0.10 3.32 16 5 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 6 O -0.57 -22.79 12.01 -136.59 -1.64 -24.43 16 7 C 0.12 5.01 5.90 86.38 0.51 5.52 16 8 N -0.74 -39.65 5.55 -343.45 -1.91 -41.56 16 9 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 10 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 11 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 12 N -0.97 -62.29 13.06 21.65 0.28 -62.00 16 13 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C 0.59 17.70 7.26 86.94 0.63 18.33 16 18 O -0.54 -19.02 15.09 8.70 0.13 -18.89 16 19 C -0.03 -0.65 6.86 42.80 0.29 -0.35 16 20 C -0.17 -3.88 10.97 22.88 0.25 -3.63 16 21 C 0.06 1.09 7.30 24.32 0.18 1.26 16 22 C 0.00 0.00 7.17 24.13 0.17 0.18 16 23 C -0.14 -1.65 10.86 22.43 0.24 -1.41 16 24 C -0.22 -1.62 10.88 22.10 0.24 -1.38 16 25 C 0.00 -0.01 12.08 67.05 0.81 0.80 16 26 O -0.18 -2.66 10.67 -6.58 -0.07 -2.73 16 27 O 0.14 2.85 11.21 66.39 0.74 3.59 16 28 N -0.32 -7.35 8.64 -48.87 -0.42 -7.77 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.80 5.29 -2.39 -0.01 1.79 16 31 H 0.10 1.50 7.83 -2.39 -0.02 1.49 16 32 H 0.09 2.34 7.48 -2.39 -0.02 2.32 16 33 H 0.13 2.36 7.86 -2.39 -0.02 2.34 16 34 H 0.38 14.24 8.33 -74.06 -0.62 13.63 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.37 21.92 7.67 -92.70 -0.71 21.21 16 38 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.25 -0.48 8.06 -2.91 -0.02 -0.51 16 Total: -1.00 -78.73 368.27 2.93 -75.80 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -0.24 Total: 35.93 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.43 Total: 10.31 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -4.45 Total: -129.01 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.83 Total: -42.45 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -78.73 2.93 -75.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734522699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.625 kcal (2) G-P(sol) polarization free energy of solvation -78.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds