Wall clock time and date at job start Tue Mar 31 2020 18:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99740 * 2 1 4 4 C 1.53005 * 109.46830 * 269.71838 * 3 2 1 5 5 H 1.08999 * 109.47168 * 60.00452 * 4 3 2 6 6 O 1.42899 * 109.47362 * 300.00459 * 4 3 2 7 7 C 1.53001 * 109.47176 * 180.02562 * 4 3 2 8 8 N 1.46493 * 109.47304 * 185.00371 * 7 4 3 9 9 C 1.36935 * 120.00233 * 180.02562 * 8 7 4 10 10 H 1.07996 * 120.00336 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00263 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00102 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99739 * 359.97438 * 11 9 8 14 14 H 1.48490 * 109.47194 * 90.00278 * 13 11 9 15 15 H 1.48502 * 109.46904 * 210.00338 * 13 11 9 16 16 H 1.48501 * 109.46939 * 329.99656 * 13 11 9 17 17 C 1.34775 * 119.99796 * 179.71773 * 2 1 3 18 18 O 1.21590 * 119.99909 * 175.75955 * 17 2 1 19 19 C 1.47586 * 120.00465 * 355.75681 * 17 2 1 20 20 C 1.39557 * 120.21360 * 47.13327 * 19 17 2 21 21 C 1.38182 * 120.29102 * 180.02562 * 20 19 17 22 22 C 1.38033 * 120.59197 * 0.02562 * 21 20 19 23 23 C 1.39481 * 120.06728 * 0.02562 * 22 21 20 24 24 N 1.36210 * 133.65745 * 179.97438 * 23 22 21 25 25 C 1.30606 * 108.67675 * 179.21422 * 24 23 22 26 26 O 1.35192 * 124.94480 * 180.13538 * 25 24 23 27 27 O 1.34423 * 110.11029 * 0.69686 * 25 24 23 28 28 C 1.35010 * 108.21361 * 359.40129 * 27 25 24 29 29 H 1.09003 * 109.47142 * 95.07292 * 1 2 3 30 30 H 1.09002 * 109.47182 * 215.07149 * 1 2 3 31 31 H 1.09001 * 109.47354 * 335.07054 * 1 2 3 32 32 H 1.08995 * 109.47711 * 29.71956 * 3 2 1 33 33 H 1.09009 * 109.47170 * 149.72559 * 3 2 1 34 34 H 0.96707 * 113.99825 * 299.99788 * 6 4 3 35 35 H 1.08999 * 109.47169 * 305.00504 * 7 4 3 36 36 H 1.08998 * 109.46851 * 64.99967 * 7 4 3 37 37 H 0.97010 * 119.99872 * 359.97438 * 8 7 4 38 38 H 0.97005 * 119.99999 * 179.97438 * 12 11 9 39 39 H 1.07999 * 119.85686 * 0.02562 * 20 19 17 40 40 H 1.07995 * 119.70629 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.96223 * 179.97438 * 22 21 20 42 42 H 0.96694 * 114.00024 * 0.64962 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4585 1.7068 -1.4426 5 1 1.5083 1.8359 -1.9607 6 8 3.2336 0.7093 -2.1105 7 6 3.2240 3.0316 -1.4426 8 7 3.3697 3.5113 -2.8191 9 6 4.0259 4.6870 -3.0686 10 1 4.4356 5.2609 -2.2506 11 6 4.1644 5.1414 -4.3730 12 7 4.7946 6.2717 -4.6127 13 14 3.4562 4.1485 -5.7880 14 1 2.0605 4.5834 -6.0481 15 1 4.2778 4.3666 -7.0057 16 1 3.4677 2.7061 -5.4351 17 6 2.1388 -1.1672 0.0058 18 8 3.3522 -1.1690 -0.0721 19 6 1.4040 -2.4431 0.1066 20 6 0.2881 -2.6764 -0.6984 21 6 -0.4014 -3.8703 -0.6049 22 6 0.0017 -4.8466 0.2837 23 6 1.1136 -4.6339 1.0985 24 7 1.7407 -5.3827 2.0479 25 6 2.7630 -4.7096 2.5036 26 8 3.6159 -5.1478 3.4566 27 8 2.8364 -3.5129 1.8959 28 6 1.8239 -3.4282 1.0068 29 1 -0.3633 -0.0909 -1.0237 30 1 -0.3634 -0.8411 0.5905 31 1 -0.3634 0.9319 0.4332 32 1 1.6062 2.0297 0.5094 33 1 3.1478 1.1397 0.5181 34 1 4.0944 0.5418 -1.7029 35 1 2.6746 3.7687 -0.8572 36 1 4.2104 2.8812 -1.0039 37 1 3.0019 2.9957 -3.5539 38 1 4.8917 6.5890 -5.5243 39 1 -0.0380 -1.9206 -1.3975 40 1 -1.2634 -4.0410 -1.2327 41 1 -0.5449 -5.7757 0.3486 42 1 3.4159 -6.0346 3.7859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734534844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:10 Heat of formation + Delta-G solvation = -45.737131 kcal Electronic energy + Delta-G solvation = -28597.955806 eV Core-core repulsion = 24353.685667 eV Total energy + Delta-G solvation = -4244.270139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.77890 -40.39590 -38.85349 -38.05838 -37.31925 -35.48232 -34.93002 -34.11548 -31.72209 -31.32255 -30.05152 -29.41554 -27.19607 -26.01358 -24.40767 -23.44874 -23.27401 -22.07194 -21.24479 -19.88294 -19.49729 -18.92363 -17.77226 -17.67813 -17.61461 -16.92723 -16.50755 -16.08408 -15.69174 -15.33099 -15.12244 -14.62504 -14.43202 -14.24933 -14.06565 -13.81606 -13.53018 -13.38393 -13.23674 -12.96896 -12.74772 -12.52324 -12.40591 -12.28121 -12.17862 -11.66540 -11.41657 -11.24368 -11.21693 -10.85054 -10.81198 -10.17176 -10.09653 -9.75943 -9.55687 -9.29267 -8.89405 -8.75743 -8.65603 -7.21481 -5.74766 -3.10172 0.07482 0.64790 1.11582 1.79444 2.52996 2.69819 3.01955 3.16026 3.41728 3.49217 3.50197 3.83613 4.09494 4.33639 4.44879 4.63207 4.66616 4.69425 4.80396 4.84839 4.87780 5.03690 5.11681 5.21610 5.32641 5.38721 5.45759 5.49825 5.57683 5.60357 5.69857 5.78084 5.82617 5.91931 5.96556 6.28087 6.39052 6.45365 6.64384 7.09897 7.11467 7.94159 7.99371 8.11044 8.44127 9.24004 9.96369 10.16632 11.43422 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.002473 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.501808 B =11321.684590 C =11834.903746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.602 5.602 3 C 0.086 3.914 4 C 0.082 3.918 5 H 0.096 0.904 6 O -0.552 6.552 7 C 0.130 3.870 8 N -0.749 5.749 9 C -0.246 4.246 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.935 5.935 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.272 1.272 17 C 0.562 3.438 18 O -0.515 6.515 19 C -0.084 4.084 20 C -0.070 4.070 21 C -0.114 4.114 22 C -0.051 4.051 23 C 0.045 3.955 24 N -0.524 5.524 25 C 0.454 3.546 26 O -0.411 6.411 27 O -0.188 6.188 28 C 0.046 3.954 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.378 0.622 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.365 0.635 38 H 0.259 0.741 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.656 -25.791 16.199 33.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C -0.037 4.037 4 C 0.021 3.979 5 H 0.114 0.886 6 O -0.357 6.357 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.582 5.582 13 Si 0.713 3.287 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.198 1.198 17 C 0.349 3.651 18 O -0.390 6.390 19 C -0.088 4.088 20 C -0.088 4.088 21 C -0.133 4.133 22 C -0.071 4.071 23 C -0.066 4.066 24 N -0.275 5.275 25 C 0.205 3.795 26 O -0.213 6.213 27 O -0.081 6.081 28 C -0.005 4.005 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.226 0.774 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.199 0.801 38 H 0.069 0.931 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -14.145 -25.604 16.050 33.365 hybrid contribution 0.194 -0.381 -0.600 0.737 sum -13.952 -25.985 15.450 33.295 Atomic orbital electron populations 1.22078 0.79382 1.03641 1.02128 1.47568 1.06981 1.05674 1.73204 1.22330 0.98455 0.84189 0.98749 1.22543 0.95665 0.88372 0.91292 0.88601 1.86505 1.33544 1.58804 1.56874 1.21217 0.97439 0.92483 0.88706 1.42585 1.69322 1.25727 1.01878 1.19052 1.28146 0.96404 0.93935 0.89311 1.24667 1.00374 0.97091 0.96979 1.69707 1.47097 1.21674 1.19763 0.86539 0.78722 0.80431 0.82963 1.21146 1.21754 1.19803 1.17970 0.87092 0.83119 0.76909 1.90805 1.13297 1.86716 1.48192 1.18693 0.98145 0.93764 0.98198 1.21404 0.91938 0.98377 0.97104 1.21032 1.00804 0.92650 0.98824 1.20430 0.93306 1.00119 0.93218 1.19432 0.98650 0.90614 0.97894 1.71244 1.08946 1.30843 1.16517 1.22302 0.87521 0.81053 0.88667 1.84706 1.47530 1.40425 1.48615 1.84451 1.45511 1.33295 1.44861 1.19706 0.88907 0.97725 0.94162 0.91935 0.90903 0.90354 0.89098 0.89300 0.77401 0.94844 0.95254 0.80131 0.93064 0.83090 0.83568 0.84008 0.69870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 9.07 59.85 0.54 1.05 16 2 N -0.60 -6.85 2.83 -182.78 -0.52 -7.37 16 3 C 0.09 1.05 5.18 -4.04 -0.02 1.03 16 4 C 0.08 1.28 3.27 -26.73 -0.09 1.19 16 5 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 6 O -0.55 -9.90 12.00 -48.57 -0.58 -10.49 16 7 C 0.13 2.49 5.90 -4.04 -0.02 2.47 16 8 N -0.75 -18.40 5.35 -59.91 -0.32 -18.72 16 9 C -0.25 -7.14 10.47 -15.06 -0.16 -7.30 16 10 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 11 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 12 N -0.93 -29.95 13.97 55.49 0.78 -29.17 16 13 Si 0.88 22.87 27.74 -169.99 -4.71 18.15 16 14 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 16 H -0.27 -6.84 6.52 56.52 0.37 -6.48 16 17 C 0.56 7.77 6.83 -12.45 -0.08 7.69 16 18 O -0.51 -9.03 15.12 -8.05 -0.12 -9.15 16 19 C -0.08 -0.96 4.95 -104.97 -0.52 -1.48 16 20 C -0.07 -0.55 7.73 -39.11 -0.30 -0.85 16 21 C -0.11 -0.68 10.00 -39.68 -0.40 -1.08 16 22 C -0.05 -0.38 10.09 -39.19 -0.40 -0.77 16 23 C 0.05 0.47 7.23 -84.71 -0.61 -0.14 16 24 N -0.52 -5.39 11.38 -12.80 -0.15 -5.53 16 25 C 0.45 4.66 9.54 52.24 0.50 5.15 16 26 O -0.41 -2.70 13.62 -40.55 -0.55 -3.26 16 27 O -0.19 -2.51 10.77 -19.88 -0.21 -2.72 16 28 C 0.05 0.56 7.08 -38.21 -0.27 0.29 16 29 H 0.06 0.39 7.01 -51.93 -0.36 0.03 16 30 H 0.07 0.44 6.20 -51.93 -0.32 0.12 16 31 H 0.08 0.45 7.83 -51.93 -0.41 0.05 16 32 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 33 H 0.09 1.19 7.49 -51.92 -0.39 0.80 16 34 H 0.38 6.54 8.32 45.56 0.38 6.92 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.37 9.01 5.53 -40.82 -0.23 8.78 16 38 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 39 H 0.15 0.94 6.12 -52.49 -0.32 0.62 16 40 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.44 0.26 9.06 45.56 0.41 0.68 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -39.78 358.68 -6.27 -46.04 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -3.35 Total: 9.50 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.93 Total: 7.31 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.21 Total: -60.79 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.47 Total: -25.62 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.78 -6.27 -46.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734534844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.307 kcal (2) G-P(sol) polarization free energy of solvation -39.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds