Wall clock time and date at job start Tue Mar 31 2020 18:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99740 * 2 1 4 4 C 1.53005 * 109.46830 * 269.71838 * 3 2 1 5 5 H 1.08999 * 109.47168 * 60.00452 * 4 3 2 6 6 O 1.42899 * 109.47362 * 300.00459 * 4 3 2 7 7 C 1.53001 * 109.47176 * 180.02562 * 4 3 2 8 8 N 1.46493 * 109.47304 * 185.00371 * 7 4 3 9 9 C 1.36935 * 120.00233 * 180.02562 * 8 7 4 10 10 H 1.07996 * 120.00336 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00263 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00102 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99739 * 359.97438 * 11 9 8 14 14 H 1.48490 * 109.47194 * 90.00278 * 13 11 9 15 15 H 1.48502 * 109.46904 * 210.00338 * 13 11 9 16 16 H 1.48501 * 109.46939 * 329.99656 * 13 11 9 17 17 C 1.34775 * 119.99796 * 179.71773 * 2 1 3 18 18 O 1.21590 * 119.99909 * 175.75955 * 17 2 1 19 19 C 1.47586 * 120.00465 * 355.75681 * 17 2 1 20 20 C 1.39557 * 120.21360 * 47.13327 * 19 17 2 21 21 C 1.38182 * 120.29102 * 180.02562 * 20 19 17 22 22 C 1.38033 * 120.59197 * 0.02562 * 21 20 19 23 23 C 1.39481 * 120.06728 * 0.02562 * 22 21 20 24 24 N 1.36210 * 133.65745 * 179.97438 * 23 22 21 25 25 C 1.30606 * 108.67675 * 179.21422 * 24 23 22 26 26 O 1.35192 * 124.94480 * 180.13538 * 25 24 23 27 27 O 1.34423 * 110.11029 * 0.69686 * 25 24 23 28 28 C 1.35010 * 108.21361 * 359.40129 * 27 25 24 29 29 H 1.09003 * 109.47142 * 95.07292 * 1 2 3 30 30 H 1.09002 * 109.47182 * 215.07149 * 1 2 3 31 31 H 1.09001 * 109.47354 * 335.07054 * 1 2 3 32 32 H 1.08995 * 109.47711 * 29.71956 * 3 2 1 33 33 H 1.09009 * 109.47170 * 149.72559 * 3 2 1 34 34 H 0.96707 * 113.99825 * 299.99788 * 6 4 3 35 35 H 1.08999 * 109.47169 * 305.00504 * 7 4 3 36 36 H 1.08998 * 109.46851 * 64.99967 * 7 4 3 37 37 H 0.97010 * 119.99872 * 359.97438 * 8 7 4 38 38 H 0.97005 * 119.99999 * 179.97438 * 12 11 9 39 39 H 1.07999 * 119.85686 * 0.02562 * 20 19 17 40 40 H 1.07995 * 119.70629 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.96223 * 179.97438 * 22 21 20 42 42 H 0.96694 * 114.00024 * 0.64962 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4585 1.7068 -1.4426 5 1 1.5083 1.8359 -1.9607 6 8 3.2336 0.7093 -2.1105 7 6 3.2240 3.0316 -1.4426 8 7 3.3697 3.5113 -2.8191 9 6 4.0259 4.6870 -3.0686 10 1 4.4356 5.2609 -2.2506 11 6 4.1644 5.1414 -4.3730 12 7 4.7946 6.2717 -4.6127 13 14 3.4562 4.1485 -5.7880 14 1 2.0605 4.5834 -6.0481 15 1 4.2778 4.3666 -7.0057 16 1 3.4677 2.7061 -5.4351 17 6 2.1388 -1.1672 0.0058 18 8 3.3522 -1.1690 -0.0721 19 6 1.4040 -2.4431 0.1066 20 6 0.2881 -2.6764 -0.6984 21 6 -0.4014 -3.8703 -0.6049 22 6 0.0017 -4.8466 0.2837 23 6 1.1136 -4.6339 1.0985 24 7 1.7407 -5.3827 2.0479 25 6 2.7630 -4.7096 2.5036 26 8 3.6159 -5.1478 3.4566 27 8 2.8364 -3.5129 1.8959 28 6 1.8239 -3.4282 1.0068 29 1 -0.3633 -0.0909 -1.0237 30 1 -0.3634 -0.8411 0.5905 31 1 -0.3634 0.9319 0.4332 32 1 1.6062 2.0297 0.5094 33 1 3.1478 1.1397 0.5181 34 1 4.0944 0.5418 -1.7029 35 1 2.6746 3.7687 -0.8572 36 1 4.2104 2.8812 -1.0039 37 1 3.0019 2.9957 -3.5539 38 1 4.8917 6.5890 -5.5243 39 1 -0.0380 -1.9206 -1.3975 40 1 -1.2634 -4.0410 -1.2327 41 1 -0.5449 -5.7757 0.3486 42 1 3.4159 -6.0346 3.7859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734534844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:10 Heat of formation + Delta-G solvation = -82.446037 kcal Electronic energy + Delta-G solvation = -28599.547624 eV Core-core repulsion = 24353.685667 eV Total energy + Delta-G solvation = -4245.861957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.50861 -41.31192 -39.51177 -38.87865 -38.47279 -36.55277 -35.99913 -35.61983 -33.50646 -32.37192 -31.06890 -30.36763 -28.10642 -27.26786 -25.29576 -24.48534 -24.10336 -23.43228 -22.68833 -20.72576 -20.12888 -19.81771 -19.61760 -18.53375 -18.38341 -17.94817 -17.52721 -17.01907 -16.65771 -16.41286 -16.26034 -16.17538 -15.51258 -15.30145 -14.99666 -14.79392 -14.69451 -14.56895 -14.29320 -14.00138 -13.86124 -13.68151 -13.38454 -13.25304 -13.10764 -12.87714 -12.82607 -12.65232 -12.28866 -12.11094 -12.01803 -11.93210 -11.86538 -11.23964 -11.02954 -10.92647 -9.96814 -9.63822 -9.40939 -9.33305 -8.05586 -5.38868 -0.57984 -0.02923 0.50836 1.07655 1.36748 1.40601 1.48840 1.63422 1.84744 2.36554 2.46739 2.50569 3.14373 3.24517 3.38301 3.47131 3.63570 3.71426 3.90413 3.97365 4.10583 4.14441 4.19945 4.23868 4.35554 4.46749 4.54702 4.65296 4.68493 4.74124 4.86139 4.89360 4.93628 5.14921 5.18990 5.21368 5.39614 5.47431 5.71444 5.88941 6.18264 6.23540 6.49971 6.72110 7.01471 7.05359 7.81447 8.00295 9.15773 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.002473 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.501808 B =11321.684590 C =11834.903746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.597 5.597 3 C 0.093 3.907 4 C 0.094 3.906 5 H 0.108 0.892 6 O -0.567 6.567 7 C 0.125 3.875 8 N -0.754 5.754 9 C -0.237 4.237 10 H 0.058 0.942 11 C -0.063 4.063 12 N -0.983 5.983 13 Si 0.957 3.043 14 H -0.271 1.271 15 H -0.296 1.296 16 H -0.260 1.260 17 C 0.554 3.446 18 O -0.568 6.568 19 C -0.110 4.110 20 C -0.057 4.057 21 C -0.096 4.096 22 C -0.045 4.045 23 C 0.027 3.973 24 N -0.526 5.526 25 C 0.447 3.553 26 O -0.409 6.409 27 O -0.223 6.223 28 C 0.014 3.986 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.377 0.623 35 H 0.049 0.951 36 H 0.021 0.979 37 H 0.367 0.633 38 H 0.259 0.741 39 H 0.172 0.828 40 H 0.192 0.808 41 H 0.170 0.830 42 H 0.462 0.538 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.365 -28.012 15.675 36.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.328 5.328 3 C -0.031 4.031 4 C 0.033 3.967 5 H 0.126 0.874 6 O -0.373 6.373 7 C -0.002 4.002 8 N -0.399 5.399 9 C -0.368 4.368 10 H 0.076 0.924 11 C -0.255 4.255 12 N -0.633 5.633 13 Si 0.784 3.216 14 H -0.197 1.197 15 H -0.222 1.222 16 H -0.185 1.185 17 C 0.342 3.658 18 O -0.448 6.448 19 C -0.114 4.114 20 C -0.075 4.075 21 C -0.114 4.114 22 C -0.064 4.064 23 C -0.084 4.084 24 N -0.277 5.277 25 C 0.198 3.802 26 O -0.214 6.214 27 O -0.117 6.117 28 C -0.036 4.036 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.200 0.800 38 H 0.068 0.932 39 H 0.189 0.811 40 H 0.209 0.791 41 H 0.187 0.813 42 H 0.327 0.673 Dipole moment (debyes) X Y Z Total from point charges -17.924 -27.873 15.583 36.620 hybrid contribution 1.323 0.293 -0.323 1.393 sum -16.601 -27.581 15.261 35.625 Atomic orbital electron populations 1.22415 0.76524 1.05378 1.03718 1.47661 1.08696 1.04504 1.71958 1.22168 0.98860 0.85600 0.96438 1.22505 0.94869 0.85885 0.93420 0.87449 1.86471 1.33803 1.59298 1.57719 1.21440 0.97872 0.94848 0.86041 1.42605 1.68776 1.24398 1.04163 1.19055 1.27220 0.97364 0.93143 0.92438 1.25512 1.01541 0.98459 0.99990 1.69882 1.49274 1.23838 1.20311 0.85372 0.78212 0.79216 0.78776 1.19667 1.22239 1.18502 1.18490 0.86748 0.84504 0.76015 1.90764 1.15623 1.87603 1.50790 1.18751 0.99832 0.92816 1.00020 1.21748 0.90363 0.99588 0.95842 1.21523 1.01053 0.90918 0.97940 1.20923 0.91955 1.01482 0.92038 1.19899 0.99694 0.90095 0.98709 1.71231 1.09014 1.30725 1.16770 1.22575 0.88026 0.80510 0.89127 1.84705 1.46905 1.42156 1.47664 1.84381 1.46669 1.34879 1.45805 1.20072 0.89474 0.99036 0.95026 0.90206 0.89610 0.88424 0.85849 0.91012 0.77485 0.93307 0.96110 0.79973 0.93246 0.81113 0.79121 0.81263 0.67310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 9.07 127.77 1.16 1.82 16 2 N -0.60 -12.61 2.83 -850.47 -2.40 -15.01 16 3 C 0.09 2.15 5.18 86.38 0.45 2.60 16 4 C 0.09 2.77 3.27 30.60 0.10 2.87 16 5 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 6 O -0.57 -20.05 12.00 -136.23 -1.63 -21.68 16 7 C 0.13 4.70 5.90 86.38 0.51 5.21 16 8 N -0.75 -36.45 5.35 -343.47 -1.84 -38.29 16 9 C -0.24 -13.93 10.47 84.04 0.88 -13.05 16 10 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 11 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 12 N -0.98 -64.26 13.97 21.65 0.30 -63.96 16 13 Si 0.96 47.23 27.74 68.60 1.90 49.13 16 14 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 15 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 16 H -0.26 -12.16 6.52 99.48 0.65 -11.51 16 17 C 0.55 15.28 6.83 86.71 0.59 15.88 16 18 O -0.57 -20.89 15.12 8.75 0.13 -20.75 16 19 C -0.11 -2.44 4.95 -20.09 -0.10 -2.53 16 20 C -0.06 -0.71 7.73 22.57 0.17 -0.54 16 21 C -0.10 -0.71 10.00 22.21 0.22 -0.49 16 22 C -0.05 -0.51 10.09 22.52 0.23 -0.28 16 23 C 0.03 0.54 7.23 39.25 0.28 0.82 16 24 N -0.53 -10.62 11.38 -422.74 -4.81 -15.43 16 25 C 0.45 9.48 9.54 130.42 1.24 10.72 16 26 O -0.41 -5.49 13.62 -62.46 -0.85 -6.34 16 27 O -0.22 -6.32 10.77 11.52 0.12 -6.19 16 28 C 0.01 0.35 7.08 23.16 0.16 0.51 16 29 H 0.08 0.63 7.01 -2.39 -0.02 0.62 16 30 H 0.09 0.75 6.20 -2.39 -0.01 0.73 16 31 H 0.10 0.72 7.83 -2.39 -0.02 0.70 16 32 H 0.12 2.04 7.85 -2.39 -0.02 2.02 16 33 H 0.07 1.94 7.49 -2.38 -0.02 1.92 16 34 H 0.38 13.40 8.32 -74.05 -0.62 12.78 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.37 17.43 5.53 -92.70 -0.51 16.92 16 38 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 39 H 0.17 1.39 6.12 -2.91 -0.02 1.37 16 40 H 0.19 -0.24 8.06 -2.91 -0.02 -0.26 16 41 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.46 0.40 9.06 -74.06 -0.67 -0.27 16 Total: -1.00 -90.56 358.68 -3.45 -94.01 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.74 Total: 24.36 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 6.37 Total: 20.15 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -8.75 Total: -132.69 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -2.23 Total: -54.97 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.90 Total: 49.13 kcal Total: -90.56 -3.45 -94.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734534844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.567 kcal (2) G-P(sol) polarization free energy of solvation -90.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds