Wall clock time and date at job start Tue Mar 31 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46504 * 120.00006 * 2 1 4 4 C 1.53002 * 109.46958 * 269.99986 * 3 2 1 5 5 H 1.09001 * 109.47324 * 304.99540 * 4 3 2 6 6 O 1.42894 * 109.47249 * 64.99964 * 4 3 2 7 7 C 1.53008 * 109.47089 * 184.99920 * 4 3 2 8 8 N 1.46502 * 109.46922 * 180.02562 * 7 4 3 9 9 C 1.36934 * 119.99469 * 179.72612 * 8 7 4 10 10 H 1.07995 * 120.00317 * 0.27133 * 9 8 7 11 11 C 1.38817 * 119.99700 * 180.27685 * 9 8 7 12 12 N 1.31614 * 120.00109 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00020 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47030 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47318 * 119.99604 * 13 11 9 16 16 H 1.48500 * 109.46941 * 240.00045 * 13 11 9 17 17 C 1.34776 * 120.00297 * 179.97438 * 2 1 3 18 18 O 1.21592 * 120.00056 * 175.72731 * 17 2 1 19 19 C 1.47585 * 119.99779 * 355.72959 * 17 2 1 20 20 C 1.39558 * 120.21681 * 48.16770 * 19 17 2 21 21 C 1.38185 * 120.29011 * 180.02562 * 20 19 17 22 22 C 1.38021 * 120.59568 * 359.97438 * 21 20 19 23 23 C 1.39490 * 120.06347 * 0.02956 * 22 21 20 24 24 N 1.36214 * 133.65429 * 179.97438 * 23 22 21 25 25 C 1.30607 * 108.67689 * 179.21165 * 24 23 22 26 26 O 1.35187 * 124.94392 * 180.13678 * 25 24 23 27 27 O 1.34417 * 110.10685 * 0.70334 * 25 24 23 28 28 C 1.35010 * 108.21706 * 359.39419 * 27 25 24 29 29 H 1.09000 * 109.47349 * 95.04359 * 1 2 3 30 30 H 1.08997 * 109.47217 * 215.04973 * 1 2 3 31 31 H 1.09001 * 109.47496 * 335.04501 * 1 2 3 32 32 H 1.09001 * 109.47554 * 150.00055 * 3 2 1 33 33 H 1.08999 * 109.47012 * 29.99777 * 3 2 1 34 34 H 0.96703 * 113.99995 * 59.99834 * 6 4 3 35 35 H 1.08999 * 109.47081 * 59.99867 * 7 4 3 36 36 H 1.09001 * 109.46728 * 299.99986 * 7 4 3 37 37 H 0.96998 * 120.00045 * 359.97438 * 8 7 4 38 38 H 0.97005 * 120.00548 * 180.02562 * 12 11 9 39 39 H 1.08004 * 119.85790 * 0.02562 * 20 19 17 40 40 H 1.08000 * 119.70238 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.97154 * 180.02562 * 22 21 20 42 42 H 0.96693 * 114.00120 * 0.65207 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2060 1.9935 -2.0814 7 6 3.3237 2.9682 -1.4444 8 7 3.5674 3.3914 -2.8256 9 6 4.3231 4.5052 -3.0771 10 1 4.7432 5.0691 -2.2575 11 6 4.5492 4.9095 -4.3857 12 7 4.0376 4.2220 -5.3847 13 14 5.5808 6.4286 -4.7290 14 1 6.0367 7.0179 -3.4444 15 1 6.7609 6.0510 -5.5473 16 1 4.7642 7.4248 -5.4679 17 6 2.1388 -1.1672 0.0005 18 8 3.3522 -1.1686 -0.0779 19 6 1.4040 -2.4435 0.0963 20 6 0.3008 -2.6820 -0.7245 21 6 -0.3887 -3.8763 -0.6357 22 6 0.0026 -4.8482 0.2628 23 6 1.1024 -4.6306 1.0927 24 7 1.7165 -5.3746 2.0543 25 6 2.7314 -4.6984 2.5218 26 8 3.5709 -5.1314 3.4889 27 8 2.8121 -3.5042 1.9102 28 6 1.8125 -3.4246 1.0061 29 1 -0.3634 -0.0903 -1.0237 30 1 -0.3633 -0.8413 0.5902 31 1 -0.3634 0.9317 0.4336 32 1 3.1499 1.1385 0.5138 33 1 1.6083 2.0284 0.5138 34 1 0.6954 2.6949 -1.6542 35 1 4.2745 2.7522 -0.9571 36 1 2.8119 3.7654 -0.9054 37 1 3.1903 2.8846 -3.5618 38 1 4.1959 4.5043 -6.2991 39 1 -0.0156 -1.9299 -1.4321 40 1 -1.2409 -4.0511 -1.2757 41 1 -0.5434 -5.7781 0.3234 42 1 3.3672 -6.0171 3.8190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734534847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:13 Heat of formation + Delta-G solvation = -49.584555 kcal Electronic energy + Delta-G solvation = -28396.903000 eV Core-core repulsion = 24152.466024 eV Total energy + Delta-G solvation = -4244.436976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.73880 -40.34532 -38.81089 -38.00733 -37.39350 -35.34259 -34.88211 -33.98158 -31.72009 -31.14822 -29.93662 -29.21976 -26.95120 -25.83786 -24.36169 -23.40637 -23.33438 -22.33444 -21.19353 -19.85197 -19.45840 -18.85064 -17.71480 -17.57598 -17.13941 -16.85045 -16.47416 -16.05427 -15.68388 -15.25405 -15.09170 -14.60718 -14.43279 -14.20582 -13.97758 -13.76242 -13.59811 -13.27631 -12.99458 -12.90428 -12.70369 -12.47252 -12.43815 -12.21777 -12.00104 -11.61476 -11.35334 -11.20451 -10.91715 -10.81451 -10.67445 -10.17102 -10.07236 -9.79098 -9.66377 -9.24965 -8.87280 -8.71423 -8.57530 -6.88802 -5.71990 -3.01290 0.12006 0.69441 1.15498 1.83430 2.53482 2.75941 3.05952 3.20226 3.45671 3.50761 3.53413 3.88482 4.14136 4.38341 4.50798 4.58384 4.73381 4.76768 4.83818 4.90078 5.03934 5.09074 5.16562 5.30819 5.36219 5.49740 5.56252 5.58838 5.68378 5.74734 5.75948 5.83782 5.99234 6.02081 6.24755 6.39303 6.43072 6.56874 6.76476 7.13948 7.16098 7.72109 7.96469 8.03745 8.46220 9.57703 10.15804 10.51767 11.50527 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.002304 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.272689 B =12151.625170 C =12784.596786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.599 5.599 3 C 0.087 3.913 4 C 0.086 3.914 5 H 0.102 0.898 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.554 3.446 18 O -0.518 6.518 19 C -0.085 4.085 20 C -0.068 4.068 21 C -0.113 4.113 22 C -0.051 4.051 23 C 0.045 3.955 24 N -0.524 5.524 25 C 0.453 3.547 26 O -0.412 6.412 27 O -0.189 6.189 28 C 0.046 3.954 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.367 0.633 35 H 0.027 0.973 36 H 0.020 0.980 37 H 0.389 0.611 38 H 0.254 0.746 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.835 -20.495 17.669 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C -0.036 4.036 4 C 0.026 3.974 5 H 0.119 0.881 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.341 3.659 18 O -0.394 6.394 19 C -0.089 4.089 20 C -0.087 4.087 21 C -0.132 4.132 22 C -0.071 4.071 23 C -0.066 4.066 24 N -0.275 5.275 25 C 0.204 3.796 26 O -0.213 6.213 27 O -0.082 6.082 28 C -0.005 4.005 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.213 0.787 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.223 0.777 38 H 0.064 0.936 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -12.633 -20.834 17.499 29.998 hybrid contribution 0.540 1.229 0.020 1.343 sum -12.093 -19.605 17.519 28.940 Atomic orbital electron populations 1.22035 0.79074 1.03114 1.02454 1.47604 1.07284 1.05500 1.72691 1.22330 0.98387 0.84015 0.98830 1.22544 0.85216 0.98235 0.91422 0.88062 1.86608 1.32291 1.59030 1.57461 1.21216 0.96388 0.92878 0.89760 1.42245 1.61982 1.31992 1.00785 1.19267 1.23755 1.02354 0.91848 0.91222 1.24764 1.01239 0.99415 0.95591 1.69693 1.49219 1.40704 0.98208 0.86111 0.79690 0.82603 0.77749 1.20585 1.21842 1.21865 1.18114 0.87139 0.83361 0.77312 1.90873 1.13246 1.86859 1.48422 1.18682 0.98411 0.93723 0.98068 1.21426 0.91868 0.98370 0.97018 1.21037 1.00786 0.92651 0.98776 1.20432 0.93431 1.00127 0.93062 1.19429 0.98790 0.90650 0.97752 1.71241 1.09407 1.30825 1.16055 1.22295 0.87597 0.81094 0.88616 1.84703 1.48509 1.40604 1.47478 1.84449 1.46207 1.33469 1.44031 1.19703 0.89259 0.97738 0.93793 0.91329 0.91321 0.90666 0.88833 0.89790 0.78710 0.95508 0.96265 0.77656 0.93564 0.82908 0.83507 0.84005 0.69897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 8.69 59.84 0.52 1.13 16 2 N -0.60 -7.34 2.84 -182.79 -0.52 -7.86 16 3 C 0.09 1.15 5.07 -4.04 -0.02 1.13 16 4 C 0.09 1.45 3.30 -26.73 -0.09 1.36 16 5 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 6 O -0.55 -8.86 12.64 -35.23 -0.45 -9.31 16 7 C 0.13 2.57 5.92 -4.04 -0.02 2.55 16 8 N -0.73 -19.15 5.49 -59.90 -0.33 -19.48 16 9 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -29.09 13.06 55.49 0.72 -28.37 16 13 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 C 0.55 8.22 7.24 -12.45 -0.09 8.13 16 18 O -0.52 -9.97 16.64 5.29 0.09 -9.88 16 19 C -0.08 -1.03 4.92 -104.97 -0.52 -1.54 16 20 C -0.07 -0.58 7.76 -39.11 -0.30 -0.88 16 21 C -0.11 -0.73 10.00 -39.68 -0.40 -1.12 16 22 C -0.05 -0.40 10.09 -39.19 -0.40 -0.79 16 23 C 0.04 0.49 7.23 -84.71 -0.61 -0.12 16 24 N -0.52 -5.58 11.38 -12.80 -0.15 -5.72 16 25 C 0.45 4.84 9.54 52.24 0.50 5.34 16 26 O -0.41 -2.85 13.62 -40.54 -0.55 -3.40 16 27 O -0.19 -2.62 10.77 -19.86 -0.21 -2.83 16 28 C 0.05 0.59 7.09 -38.21 -0.27 0.32 16 29 H 0.07 0.52 7.03 -51.93 -0.37 0.16 16 30 H 0.07 0.47 6.26 -51.93 -0.32 0.14 16 31 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 32 H 0.09 1.36 7.48 -51.93 -0.39 0.98 16 33 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 34 H 0.37 4.63 9.05 45.56 0.41 5.04 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.39 11.06 7.54 -40.82 -0.31 10.75 16 38 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.15 1.07 6.22 -52.48 -0.33 0.74 16 40 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.44 0.40 9.06 45.56 0.41 0.81 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -39.67 364.66 -6.23 -45.90 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -3.36 Total: 9.68 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -1.95 Total: 7.88 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.27 Total: -61.43 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.12 Total: -25.42 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.67 -6.23 -45.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734534847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.688 kcal (2) G-P(sol) polarization free energy of solvation -39.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds