Wall clock time and date at job start Tue Mar 31 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46504 * 120.00006 * 2 1 4 4 C 1.53002 * 109.46958 * 269.99986 * 3 2 1 5 5 H 1.09001 * 109.47324 * 304.99540 * 4 3 2 6 6 O 1.42894 * 109.47249 * 64.99964 * 4 3 2 7 7 C 1.53008 * 109.47089 * 184.99920 * 4 3 2 8 8 N 1.46502 * 109.46922 * 180.02562 * 7 4 3 9 9 C 1.36934 * 119.99469 * 179.72612 * 8 7 4 10 10 H 1.07995 * 120.00317 * 0.27133 * 9 8 7 11 11 C 1.38817 * 119.99700 * 180.27685 * 9 8 7 12 12 N 1.31614 * 120.00109 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00020 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47030 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47318 * 119.99604 * 13 11 9 16 16 H 1.48500 * 109.46941 * 240.00045 * 13 11 9 17 17 C 1.34776 * 120.00297 * 179.97438 * 2 1 3 18 18 O 1.21592 * 120.00056 * 175.72731 * 17 2 1 19 19 C 1.47585 * 119.99779 * 355.72959 * 17 2 1 20 20 C 1.39558 * 120.21681 * 48.16770 * 19 17 2 21 21 C 1.38185 * 120.29011 * 180.02562 * 20 19 17 22 22 C 1.38021 * 120.59568 * 359.97438 * 21 20 19 23 23 C 1.39490 * 120.06347 * 0.02956 * 22 21 20 24 24 N 1.36214 * 133.65429 * 179.97438 * 23 22 21 25 25 C 1.30607 * 108.67689 * 179.21165 * 24 23 22 26 26 O 1.35187 * 124.94392 * 180.13678 * 25 24 23 27 27 O 1.34417 * 110.10685 * 0.70334 * 25 24 23 28 28 C 1.35010 * 108.21706 * 359.39419 * 27 25 24 29 29 H 1.09000 * 109.47349 * 95.04359 * 1 2 3 30 30 H 1.08997 * 109.47217 * 215.04973 * 1 2 3 31 31 H 1.09001 * 109.47496 * 335.04501 * 1 2 3 32 32 H 1.09001 * 109.47554 * 150.00055 * 3 2 1 33 33 H 1.08999 * 109.47012 * 29.99777 * 3 2 1 34 34 H 0.96703 * 113.99995 * 59.99834 * 6 4 3 35 35 H 1.08999 * 109.47081 * 59.99867 * 7 4 3 36 36 H 1.09001 * 109.46728 * 299.99986 * 7 4 3 37 37 H 0.96998 * 120.00045 * 359.97438 * 8 7 4 38 38 H 0.97005 * 120.00548 * 180.02562 * 12 11 9 39 39 H 1.08004 * 119.85790 * 0.02562 * 20 19 17 40 40 H 1.08000 * 119.70238 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.97154 * 180.02562 * 22 21 20 42 42 H 0.96693 * 114.00120 * 0.65207 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2060 1.9935 -2.0814 7 6 3.3237 2.9682 -1.4444 8 7 3.5674 3.3914 -2.8256 9 6 4.3231 4.5052 -3.0771 10 1 4.7432 5.0691 -2.2575 11 6 4.5492 4.9095 -4.3857 12 7 4.0376 4.2220 -5.3847 13 14 5.5808 6.4286 -4.7290 14 1 6.0367 7.0179 -3.4444 15 1 6.7609 6.0510 -5.5473 16 1 4.7642 7.4248 -5.4679 17 6 2.1388 -1.1672 0.0005 18 8 3.3522 -1.1686 -0.0779 19 6 1.4040 -2.4435 0.0963 20 6 0.3008 -2.6820 -0.7245 21 6 -0.3887 -3.8763 -0.6357 22 6 0.0026 -4.8482 0.2628 23 6 1.1024 -4.6306 1.0927 24 7 1.7165 -5.3746 2.0543 25 6 2.7314 -4.6984 2.5218 26 8 3.5709 -5.1314 3.4889 27 8 2.8121 -3.5042 1.9102 28 6 1.8125 -3.4246 1.0061 29 1 -0.3634 -0.0903 -1.0237 30 1 -0.3633 -0.8413 0.5902 31 1 -0.3634 0.9317 0.4336 32 1 3.1499 1.1385 0.5138 33 1 1.6083 2.0284 0.5138 34 1 0.6954 2.6949 -1.6542 35 1 4.2745 2.7522 -0.9571 36 1 2.8119 3.7654 -0.9054 37 1 3.1903 2.8846 -3.5618 38 1 4.1959 4.5043 -6.2991 39 1 -0.0156 -1.9299 -1.4321 40 1 -1.2409 -4.0511 -1.2757 41 1 -0.5434 -5.7781 0.3234 42 1 3.3672 -6.0171 3.8190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734534847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:13 Heat of formation + Delta-G solvation = -87.074264 kcal Electronic energy + Delta-G solvation = -28398.528676 eV Core-core repulsion = 24152.466024 eV Total energy + Delta-G solvation = -4246.062652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.52220 -41.36062 -39.51386 -38.91442 -38.55781 -36.53002 -35.88213 -35.62149 -33.26953 -32.34823 -30.94405 -30.31866 -27.94070 -27.25054 -25.39740 -24.69633 -24.11876 -23.54144 -22.68785 -20.77313 -20.13554 -19.61301 -19.26061 -18.55959 -18.40826 -17.93983 -17.50787 -17.14361 -16.58669 -16.49552 -16.26246 -16.14001 -15.59557 -15.19544 -15.03408 -14.80596 -14.66218 -14.57128 -14.30395 -13.95493 -13.72349 -13.64926 -13.34683 -13.13728 -13.01004 -12.88724 -12.79317 -12.63377 -12.17858 -12.12282 -12.03892 -11.99832 -11.83891 -11.31449 -11.01764 -10.99097 -9.98701 -9.65850 -9.42076 -9.03700 -7.96392 -5.26647 -0.59640 -0.04332 0.49970 1.05453 1.45419 1.47450 1.54181 1.57395 1.81598 2.35323 2.48801 2.54240 3.13363 3.34734 3.42328 3.47420 3.67165 3.74254 3.89039 3.97054 4.12258 4.15263 4.21780 4.29453 4.45230 4.48840 4.55407 4.64181 4.69001 4.74408 4.85436 4.89967 4.97461 5.14393 5.18795 5.20660 5.39507 5.45467 5.46861 5.88476 6.18500 6.24459 6.49462 6.89974 6.92929 7.30829 8.06308 8.29860 9.27352 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.002304 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.272689 B =12151.625170 C =12784.596786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.593 5.593 3 C 0.096 3.904 4 C 0.107 3.893 5 H 0.062 0.938 6 O -0.557 6.557 7 C 0.123 3.877 8 N -0.741 5.741 9 C -0.248 4.248 10 H 0.077 0.923 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.265 1.265 15 H -0.295 1.295 16 H -0.289 1.289 17 C 0.545 3.455 18 O -0.581 6.581 19 C -0.112 4.112 20 C -0.056 4.056 21 C -0.095 4.095 22 C -0.042 4.042 23 C 0.028 3.972 24 N -0.524 5.524 25 C 0.447 3.553 26 O -0.408 6.408 27 O -0.224 6.224 28 C 0.014 3.986 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.385 0.615 35 H 0.019 0.981 36 H 0.044 0.956 37 H 0.375 0.625 38 H 0.252 0.748 39 H 0.170 0.830 40 H 0.193 0.807 41 H 0.172 0.828 42 H 0.462 0.538 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.531 -20.717 18.387 32.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.323 5.323 3 C -0.028 4.028 4 C 0.046 3.954 5 H 0.080 0.920 6 O -0.363 6.363 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.379 4.379 10 H 0.095 0.905 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.189 1.189 15 H -0.222 1.222 16 H -0.216 1.216 17 C 0.334 3.666 18 O -0.461 6.461 19 C -0.116 4.116 20 C -0.074 4.074 21 C -0.113 4.113 22 C -0.061 4.061 23 C -0.082 4.082 24 N -0.275 5.275 25 C 0.198 3.802 26 O -0.214 6.214 27 O -0.119 6.119 28 C -0.036 4.036 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.234 0.766 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.187 0.813 40 H 0.210 0.790 41 H 0.190 0.810 42 H 0.327 0.673 Dipole moment (debyes) X Y Z Total from point charges -15.390 -21.065 18.292 31.862 hybrid contribution 1.292 1.222 -0.153 1.785 sum -14.098 -19.843 18.139 30.357 Atomic orbital electron populations 1.22352 0.76112 1.05172 1.03639 1.47716 1.09036 1.04355 1.71203 1.22164 0.98848 0.85583 0.96171 1.22112 0.84807 0.95294 0.93185 0.92008 1.86573 1.31727 1.59933 1.58099 1.21428 0.97009 0.95092 0.86895 1.42456 1.61794 1.31419 1.02731 1.19701 1.23286 1.02750 0.92196 0.90474 1.25660 1.03083 1.02827 0.95501 1.69859 1.51129 1.42692 0.98380 0.85010 0.77632 0.78793 0.77917 1.18878 1.22199 1.21597 1.18708 0.86696 0.84950 0.76236 1.90824 1.15967 1.87874 1.51473 1.18697 1.00143 0.92644 1.00083 1.21734 0.90360 0.99627 0.95723 1.21524 1.00950 0.90831 0.98009 1.20938 0.91989 1.01464 0.91709 1.19898 0.99772 0.90020 0.98552 1.71235 1.09446 1.30611 1.16252 1.22575 0.88083 0.80486 0.89065 1.84704 1.47861 1.42362 1.46452 1.84379 1.47354 1.35153 1.44984 1.20046 0.89893 0.99038 0.94612 0.90376 0.89775 0.88307 0.90752 0.85710 0.76576 0.96301 0.93821 0.79331 0.93966 0.81311 0.79013 0.81018 0.67282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 8.69 127.77 1.11 2.02 16 2 N -0.59 -14.20 2.84 -850.50 -2.41 -16.61 16 3 C 0.10 2.48 5.07 86.38 0.44 2.92 16 4 C 0.11 3.62 3.30 30.60 0.10 3.72 16 5 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 6 O -0.56 -17.28 12.64 -148.98 -1.88 -19.16 16 7 C 0.12 5.02 5.92 86.38 0.51 5.53 16 8 N -0.74 -39.69 5.49 -343.44 -1.89 -41.58 16 9 C -0.25 -14.35 9.99 84.04 0.84 -13.52 16 10 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 11 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 12 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 13 Si 0.98 47.39 29.55 68.60 2.03 49.41 16 14 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 17 C 0.55 16.85 7.24 86.71 0.63 17.47 16 18 O -0.58 -24.18 16.64 -4.00 -0.07 -24.25 16 19 C -0.11 -2.72 4.92 -20.09 -0.10 -2.82 16 20 C -0.06 -0.82 7.76 22.58 0.18 -0.64 16 21 C -0.09 -0.83 10.00 22.21 0.22 -0.61 16 22 C -0.04 -0.52 10.09 22.52 0.23 -0.29 16 23 C 0.03 0.60 7.23 39.25 0.28 0.88 16 24 N -0.52 -11.01 11.38 -422.76 -4.81 -15.82 16 25 C 0.45 9.92 9.54 130.42 1.24 11.16 16 26 O -0.41 -5.80 13.62 -62.40 -0.85 -6.65 16 27 O -0.22 -6.69 10.77 11.59 0.12 -6.56 16 28 C 0.01 0.38 7.09 23.16 0.16 0.54 16 29 H 0.08 0.94 7.03 -2.39 -0.02 0.92 16 30 H 0.08 0.91 6.26 -2.39 -0.01 0.89 16 31 H 0.10 0.89 7.84 -2.39 -0.02 0.87 16 32 H 0.07 2.25 7.48 -2.39 -0.02 2.23 16 33 H 0.12 2.20 7.86 -2.39 -0.02 2.18 16 34 H 0.39 8.72 9.05 -74.06 -0.67 8.05 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.37 21.89 7.54 -92.71 -0.70 21.19 16 38 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 39 H 0.17 1.86 6.22 -2.91 -0.02 1.84 16 40 H 0.19 0.03 8.06 -2.91 -0.02 0.01 16 41 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 42 H 0.46 0.68 9.06 -74.06 -0.67 0.01 16 Total: -1.00 -91.37 364.66 -4.09 -95.46 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.92 Total: 25.10 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.31 Total: 22.17 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -8.83 Total: -135.52 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -2.67 Total: -56.62 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -91.37 -4.09 -95.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734534847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.382 kcal (2) G-P(sol) polarization free energy of solvation -91.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds