Wall clock time and date at job start Tue Mar 31 2020 19:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00117 * 2 1 4 4 C 1.53004 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47116 * 65.00044 * 4 3 2 6 6 C 1.36940 * 119.99696 * 93.76719 * 5 4 3 7 7 H 1.08001 * 119.99883 * 217.46423 * 6 5 4 8 8 C 1.38805 * 120.00437 * 37.46392 * 6 5 4 9 9 N 1.31623 * 120.00249 * 213.33338 * 8 6 5 10 10 Si 1.86806 * 119.99780 * 33.60349 * 8 6 5 11 11 H 1.48500 * 109.46721 * 94.42574 * 10 8 6 12 12 H 1.48500 * 109.46939 * 214.42230 * 10 8 6 13 13 H 1.48489 * 109.47044 * 334.42481 * 10 8 6 14 14 C 1.46498 * 120.00164 * 273.76780 * 5 4 3 15 15 C 1.52997 * 109.46939 * 264.68615 * 14 5 4 16 16 N 1.46501 * 109.47014 * 183.65431 * 15 14 5 17 17 C 1.34780 * 119.99766 * 179.97438 * 16 15 14 18 18 O 1.21274 * 120.00593 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99764 * 179.97438 * 17 16 15 20 20 H 1.09012 * 109.75699 * 319.29806 * 19 17 16 21 21 C 1.54106 * 109.76482 * 80.02162 * 19 17 16 22 22 C 1.54925 * 105.89870 * 165.31667 * 21 19 17 23 23 S 1.83179 * 102.70652 * 334.83218 * 22 21 19 24 24 O 1.42100 * 111.27368 * 111.03193 * 23 22 21 25 25 O 1.42104 * 111.27399 * 250.37890 * 23 22 21 26 26 N 1.47986 * 109.76527 * 198.57826 * 19 17 16 27 27 H 1.08996 * 109.47292 * 300.00004 * 1 2 3 28 28 H 1.09006 * 109.47251 * 60.00243 * 1 2 3 29 29 H 1.09005 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47412 * 60.00071 * 3 2 1 31 31 H 1.09003 * 109.47428 * 300.00150 * 3 2 1 32 32 H 1.08994 * 109.47248 * 304.99914 * 4 3 2 33 33 H 1.09002 * 109.46876 * 185.00012 * 4 3 2 34 34 H 0.97005 * 119.99998 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47108 * 24.68645 * 14 5 4 36 36 H 1.09004 * 109.47272 * 144.68217 * 14 5 4 37 37 H 1.09003 * 109.47377 * 303.64790 * 15 14 5 38 38 H 1.08997 * 109.47615 * 63.65299 * 15 14 5 39 39 H 0.96999 * 119.99809 * 359.97438 * 16 15 14 40 40 H 1.09000 * 110.16573 * 284.42015 * 21 19 17 41 41 H 1.08993 * 110.16743 * 46.13157 * 21 19 17 42 42 H 1.08996 * 110.76696 * 93.13734 * 22 21 19 43 43 H 1.09004 * 110.76118 * 216.34725 * 22 21 19 44 44 H 0.97000 * 127.76534 * 16.19357 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.3419 1.3480 -2.3124 7 1 4.0926 1.0449 -3.3186 8 6 5.0323 2.5325 -2.0954 9 7 4.8362 3.5636 -2.8895 10 14 6.2455 2.6605 -0.6807 11 1 7.6128 2.3531 -1.1719 12 1 6.2166 4.0381 -0.1270 13 1 5.8716 1.6922 0.3812 14 6 4.0272 -0.8957 -1.3667 15 6 5.4446 -1.3828 -1.0593 16 7 5.5170 -2.8322 -1.2598 17 6 6.6770 -3.4848 -1.0473 18 8 7.6609 -2.8722 -0.6906 19 6 6.7513 -4.9759 -1.2530 20 1 5.8471 -5.4467 -0.8669 21 6 6.9007 -5.2879 -2.7548 22 6 7.3430 -6.7704 -2.8382 23 16 8.1547 -7.0405 -1.2185 24 8 7.3926 -7.9169 -0.3997 25 8 9.5609 -7.1846 -1.3640 26 7 7.9365 -5.5192 -0.5530 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5684 0.8426 33 1 3.9784 2.1765 0.0902 34 1 5.3185 4.3915 -2.7376 35 1 3.3284 -1.3408 -0.6584 36 1 3.7537 -1.1894 -2.3801 37 1 6.1514 -0.8882 -1.7256 38 1 5.6938 -1.1463 -0.0249 39 1 4.7301 -3.3222 -1.5455 40 1 5.9465 -5.1514 -3.2637 41 1 7.6587 -4.6429 -3.1990 42 1 6.4794 -7.4256 -2.9517 43 1 8.0482 -6.9177 -3.6563 44 1 8.4678 -5.0904 0.1360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734579834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:47 Heat of formation + Delta-G solvation = -113.834889 kcal Electronic energy + Delta-G solvation = -27463.438785 eV Core-core repulsion = 23351.659657 eV Total energy + Delta-G solvation = -4111.779129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03481 -37.69188 -37.38943 -36.80100 -36.17192 -35.93927 -34.39758 -32.03442 -31.80060 -30.07002 -28.26921 -26.74274 -25.82962 -23.99745 -23.01156 -22.30860 -20.70556 -20.33591 -19.76811 -18.27344 -17.43771 -16.95476 -16.56656 -16.18785 -15.95590 -15.75447 -15.51815 -15.20412 -15.10862 -14.83648 -14.41930 -14.28991 -14.01840 -13.79878 -13.60678 -13.37916 -12.86006 -12.69732 -12.43417 -12.29479 -12.28307 -12.16103 -11.92564 -11.84252 -11.66841 -11.33326 -11.27723 -10.98858 -10.77974 -10.48540 -10.27654 -10.21487 -10.10651 -9.76717 -9.60687 -9.14764 -8.85372 -8.55154 -6.96143 -6.18376 -3.48069 -0.10291 2.17183 2.52767 3.09529 3.29313 3.31453 3.44339 3.51294 3.67133 3.91712 4.06652 4.29957 4.38597 4.45402 4.51263 4.74638 4.84440 4.93837 5.09398 5.24024 5.28815 5.37779 5.51234 5.59849 5.77417 5.79103 5.84052 5.94675 6.01564 6.10254 6.26350 6.45606 6.51279 6.61390 6.71526 6.84439 6.86733 7.55401 7.65423 7.91447 8.20054 8.29380 8.88222 9.60184 10.03941 10.96963 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.002819 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.323219 B = 9930.891720 C =11041.876300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.042 3.958 4 C 0.153 3.847 5 N -0.588 5.588 6 C -0.283 4.283 7 H 0.077 0.923 8 C 0.049 3.951 9 N -0.878 5.878 10 Si 0.845 3.155 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.262 1.262 14 C 0.144 3.856 15 C 0.090 3.910 16 N -0.716 5.716 17 C 0.516 3.484 18 O -0.525 6.525 19 C 0.084 3.916 20 H 0.113 0.887 21 C -0.116 4.116 22 C -0.600 4.600 23 S 2.579 3.421 24 O -0.952 6.952 25 O -0.958 6.958 26 N -1.081 6.081 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.265 0.735 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.399 0.601 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 -18.031 1.476 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.036 4.036 4 C 0.027 3.973 5 N -0.309 5.309 6 C -0.411 4.411 7 H 0.095 0.905 8 C -0.154 4.154 9 N -0.516 5.516 10 Si 0.672 3.328 11 H -0.214 1.214 12 H -0.220 1.220 13 H -0.186 1.186 14 C 0.017 3.983 15 C -0.035 4.035 16 N -0.368 5.368 17 C 0.298 3.702 18 O -0.401 6.401 19 C -0.028 4.028 20 H 0.131 0.869 21 C -0.156 4.156 22 C -0.730 4.730 23 S 2.673 3.327 24 O -0.942 6.942 25 O -0.948 6.948 26 N -0.849 5.849 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.233 0.767 40 H 0.133 0.867 41 H 0.119 0.881 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -1.858 -18.355 2.062 18.563 hybrid contribution 0.089 0.992 0.411 1.077 sum -1.769 -17.363 2.472 17.627 Atomic orbital electron populations 1.22623 0.82863 1.01569 0.99319 1.87863 1.18137 1.29080 1.95276 1.23425 0.97268 0.83778 0.99149 1.21254 0.89549 0.97919 0.88608 1.43904 1.74763 0.99961 1.12256 1.18663 1.32537 1.02172 0.87742 0.90539 1.25471 0.97646 0.95755 0.96504 1.70044 1.39677 1.01469 1.40418 0.87398 0.84175 0.76984 0.84270 1.21371 1.21977 1.18602 1.21088 0.91583 0.85624 1.00010 1.22524 1.02701 0.76755 1.01519 1.46113 1.11757 1.10446 1.68447 1.19942 0.83925 0.87905 0.78423 1.90747 1.35489 1.67977 1.45871 1.22047 0.91451 0.96193 0.93143 0.86923 1.22422 1.06349 0.92898 0.93893 1.30756 1.14770 1.04903 1.22589 1.06139 0.74995 0.73510 0.78092 1.93661 1.72997 1.63332 1.64196 1.93620 1.29647 1.85172 1.86332 1.55340 1.39663 1.36733 1.53167 0.95082 0.94515 0.90604 0.95008 0.92464 0.93767 0.91260 0.92555 0.92138 0.93090 0.90831 0.92383 0.76721 0.86697 0.88054 0.83827 0.83663 0.71581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.45 9.27 -35.23 -0.33 -6.78 16 3 C 0.04 0.76 6.28 37.16 0.23 1.00 16 4 C 0.15 3.11 4.38 -4.04 -0.02 3.09 16 5 N -0.59 -12.76 2.04 -173.24 -0.35 -13.11 16 6 C -0.28 -7.31 9.78 -15.06 -0.15 -7.45 16 7 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 8 C 0.05 1.33 5.01 -17.43 -0.09 1.24 16 9 N -0.88 -25.24 13.97 55.49 0.78 -24.47 16 10 Si 0.85 20.71 26.32 -169.99 -4.47 16.23 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.26 -6.09 5.92 56.52 0.33 -5.75 16 14 C 0.14 2.53 5.55 -4.04 -0.02 2.51 16 15 C 0.09 1.54 5.97 -4.04 -0.02 1.52 16 16 N -0.72 -8.88 5.56 -60.29 -0.33 -9.21 16 17 C 0.52 6.74 7.09 -10.98 -0.08 6.66 16 18 O -0.53 -9.36 16.28 5.56 0.09 -9.27 16 19 C 0.08 0.73 3.29 -67.69 -0.22 0.51 16 20 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 21 C -0.12 -0.70 6.12 -25.14 -0.15 -0.85 16 22 C -0.60 -2.82 7.49 38.17 0.29 -2.54 16 23 S 2.58 22.77 6.40 -107.50 -0.69 22.08 16 24 O -0.95 -11.15 18.14 -57.41 -1.04 -12.19 16 25 O -0.96 -12.15 18.14 -57.41 -1.04 -13.19 16 26 N -1.08 -10.63 6.62 -4.53 -0.03 -10.66 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.07 1.51 4.57 -51.93 -0.24 1.28 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.06 0.99 6.89 -51.93 -0.36 0.63 16 36 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.40 3.41 8.47 -40.82 -0.35 3.07 16 40 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.15 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.44 4.63 8.54 -40.75 -0.35 4.28 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -37.35 373.52 -7.74 -45.09 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.83 Total: 2.63 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.88 Total: 7.21 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.06 Total: -57.45 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -2.32 Total: -41.43 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.47 Total: 16.23 kcal Atomic # 16 Polarization: 22.77 SS G_CDS: -0.69 Total: 22.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.35 -7.74 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734579834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.743 kcal (2) G-P(sol) polarization free energy of solvation -37.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds