Wall clock time and date at job start Tue Mar 31 2020 19:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00117 * 2 1 4 4 C 1.53004 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47116 * 65.00044 * 4 3 2 6 6 C 1.36940 * 119.99696 * 93.76719 * 5 4 3 7 7 H 1.08001 * 119.99883 * 217.46423 * 6 5 4 8 8 C 1.38805 * 120.00437 * 37.46392 * 6 5 4 9 9 N 1.31623 * 120.00249 * 213.33338 * 8 6 5 10 10 Si 1.86806 * 119.99780 * 33.60349 * 8 6 5 11 11 H 1.48500 * 109.46721 * 94.42574 * 10 8 6 12 12 H 1.48500 * 109.46939 * 214.42230 * 10 8 6 13 13 H 1.48489 * 109.47044 * 334.42481 * 10 8 6 14 14 C 1.46498 * 120.00164 * 273.76780 * 5 4 3 15 15 C 1.52997 * 109.46939 * 264.68615 * 14 5 4 16 16 N 1.46501 * 109.47014 * 183.65431 * 15 14 5 17 17 C 1.34780 * 119.99766 * 179.97438 * 16 15 14 18 18 O 1.21274 * 120.00593 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99764 * 179.97438 * 17 16 15 20 20 H 1.09012 * 109.75699 * 319.29806 * 19 17 16 21 21 C 1.54106 * 109.76482 * 80.02162 * 19 17 16 22 22 C 1.54925 * 105.89870 * 165.31667 * 21 19 17 23 23 S 1.83179 * 102.70652 * 334.83218 * 22 21 19 24 24 O 1.42100 * 111.27368 * 111.03193 * 23 22 21 25 25 O 1.42104 * 111.27399 * 250.37890 * 23 22 21 26 26 N 1.47986 * 109.76527 * 198.57826 * 19 17 16 27 27 H 1.08996 * 109.47292 * 300.00004 * 1 2 3 28 28 H 1.09006 * 109.47251 * 60.00243 * 1 2 3 29 29 H 1.09005 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47412 * 60.00071 * 3 2 1 31 31 H 1.09003 * 109.47428 * 300.00150 * 3 2 1 32 32 H 1.08994 * 109.47248 * 304.99914 * 4 3 2 33 33 H 1.09002 * 109.46876 * 185.00012 * 4 3 2 34 34 H 0.97005 * 119.99998 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47108 * 24.68645 * 14 5 4 36 36 H 1.09004 * 109.47272 * 144.68217 * 14 5 4 37 37 H 1.09003 * 109.47377 * 303.64790 * 15 14 5 38 38 H 1.08997 * 109.47615 * 63.65299 * 15 14 5 39 39 H 0.96999 * 119.99809 * 359.97438 * 16 15 14 40 40 H 1.09000 * 110.16573 * 284.42015 * 21 19 17 41 41 H 1.08993 * 110.16743 * 46.13157 * 21 19 17 42 42 H 1.08996 * 110.76696 * 93.13734 * 22 21 19 43 43 H 1.09004 * 110.76118 * 216.34725 * 22 21 19 44 44 H 0.97000 * 127.76534 * 16.19357 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.3419 1.3480 -2.3124 7 1 4.0926 1.0449 -3.3186 8 6 5.0323 2.5325 -2.0954 9 7 4.8362 3.5636 -2.8895 10 14 6.2455 2.6605 -0.6807 11 1 7.6128 2.3531 -1.1719 12 1 6.2166 4.0381 -0.1270 13 1 5.8716 1.6922 0.3812 14 6 4.0272 -0.8957 -1.3667 15 6 5.4446 -1.3828 -1.0593 16 7 5.5170 -2.8322 -1.2598 17 6 6.6770 -3.4848 -1.0473 18 8 7.6609 -2.8722 -0.6906 19 6 6.7513 -4.9759 -1.2530 20 1 5.8471 -5.4467 -0.8669 21 6 6.9007 -5.2879 -2.7548 22 6 7.3430 -6.7704 -2.8382 23 16 8.1547 -7.0405 -1.2185 24 8 7.3926 -7.9169 -0.3997 25 8 9.5609 -7.1846 -1.3640 26 7 7.9365 -5.5192 -0.5530 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5684 0.8426 33 1 3.9784 2.1765 0.0902 34 1 5.3185 4.3915 -2.7376 35 1 3.3284 -1.3408 -0.6584 36 1 3.7537 -1.1894 -2.3801 37 1 6.1514 -0.8882 -1.7256 38 1 5.6938 -1.1463 -0.0249 39 1 4.7301 -3.3222 -1.5455 40 1 5.9465 -5.1514 -3.2637 41 1 7.6587 -4.6429 -3.1990 42 1 6.4794 -7.4256 -2.9517 43 1 8.0482 -6.9177 -3.6563 44 1 8.4678 -5.0904 0.1360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734579834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:46 Heat of formation + Delta-G solvation = -147.779438 kcal Electronic energy + Delta-G solvation = -27464.910731 eV Core-core repulsion = 23351.659657 eV Total energy + Delta-G solvation = -4113.251075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06827 -39.08611 -38.19184 -37.73444 -37.27943 -36.93139 -35.76197 -33.76449 -32.61151 -31.43245 -29.65362 -27.76096 -27.03346 -25.52168 -24.03829 -23.47199 -22.06343 -21.52357 -20.56342 -19.15377 -18.77959 -18.12575 -17.54768 -17.31358 -17.23848 -16.86734 -16.54474 -16.51835 -16.28053 -15.98917 -15.73543 -15.44212 -15.14044 -15.04590 -14.46859 -14.42742 -14.24005 -14.08321 -13.54603 -13.44847 -13.26023 -13.14018 -13.10317 -12.95663 -12.86505 -12.70366 -12.52764 -12.32067 -12.11783 -11.95108 -11.70881 -11.55774 -11.52992 -11.08164 -10.61427 -10.58544 -10.41799 -10.08799 -8.79092 -8.27637 -5.51524 -0.73692 1.30891 1.40295 1.45216 1.50523 1.60418 2.10636 2.41104 2.67563 2.94163 3.01724 3.06714 3.37591 3.42957 3.56509 3.80400 3.91161 4.16806 4.28471 4.31680 4.32588 4.44663 4.47100 4.57699 4.67715 4.68903 4.74620 4.78881 4.86299 4.88674 4.93853 4.97895 5.08002 5.18556 5.26853 5.47880 5.92493 6.03969 6.21123 6.41235 6.56826 6.99369 7.22742 7.64783 8.10273 8.92419 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.002819 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.323219 B = 9930.891720 C =11041.876300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.055 3.945 4 C 0.145 3.855 5 N -0.600 5.600 6 C -0.261 4.261 7 H 0.048 0.952 8 C 0.004 3.996 9 N -0.924 5.924 10 Si 0.897 3.103 11 H -0.306 1.306 12 H -0.294 1.294 13 H -0.243 1.243 14 C 0.151 3.849 15 C 0.107 3.893 16 N -0.701 5.701 17 C 0.514 3.486 18 O -0.579 6.579 19 C 0.086 3.914 20 H 0.152 0.848 21 C -0.119 4.119 22 C -0.558 4.558 23 S 2.575 3.425 24 O -0.986 6.986 25 O -1.007 7.007 26 N -1.095 6.095 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.422 0.578 40 H 0.154 0.846 41 H 0.089 0.911 42 H 0.184 0.816 43 H 0.168 0.832 44 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 -20.533 1.531 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.024 4.024 4 C 0.020 3.980 5 N -0.322 5.322 6 C -0.391 4.391 7 H 0.065 0.935 8 C -0.195 4.195 9 N -0.566 5.566 10 Si 0.724 3.276 11 H -0.235 1.235 12 H -0.221 1.221 13 H -0.167 1.167 14 C 0.025 3.975 15 C -0.020 4.020 16 N -0.354 5.354 17 C 0.299 3.701 18 O -0.458 6.458 19 C -0.026 4.026 20 H 0.169 0.831 21 C -0.159 4.159 22 C -0.693 4.693 23 S 2.674 3.326 24 O -0.976 6.976 25 O -0.996 6.996 26 N -0.860 5.860 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.260 0.740 40 H 0.172 0.828 41 H 0.107 0.893 42 H 0.201 0.799 43 H 0.185 0.815 44 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.088 -20.932 2.174 21.438 hybrid contribution 0.635 1.688 0.325 1.833 sum -3.454 -19.243 2.499 19.710 Atomic orbital electron populations 1.22855 0.80559 1.03505 0.99934 1.87804 1.20527 1.27982 1.95393 1.23085 0.95608 0.84576 0.99140 1.21300 0.91319 0.97126 0.88269 1.44011 1.74982 1.01485 1.11734 1.18558 1.30580 1.02061 0.87877 0.93459 1.25858 0.99210 0.95860 0.98569 1.70119 1.41460 1.02146 1.42891 0.86564 0.81267 0.77142 0.82579 1.23469 1.22070 1.16686 1.21113 0.92107 0.83180 1.01096 1.21977 1.01178 0.79434 0.99433 1.45804 1.12900 1.08543 1.68162 1.20702 0.82860 0.89739 0.76805 1.90732 1.37357 1.69592 1.48140 1.22361 0.92538 0.92481 0.95240 0.83122 1.22604 1.08188 0.93269 0.91866 1.30567 1.15857 1.04553 1.18274 1.06087 0.74116 0.72665 0.79695 1.93613 1.72988 1.64235 1.66773 1.93558 1.32921 1.85654 1.87504 1.55434 1.40220 1.36993 1.53394 0.93490 0.94871 0.88053 0.92451 0.95054 0.92151 0.93198 0.92755 0.89884 0.92340 0.94504 0.94140 0.73985 0.82834 0.89254 0.79876 0.81459 0.72453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -12.17 9.27 -148.98 -1.38 -13.55 16 3 C 0.05 1.87 6.28 71.98 0.45 2.32 16 4 C 0.15 5.70 4.38 86.38 0.38 6.08 16 5 N -0.60 -25.63 2.04 -702.01 -1.43 -27.06 16 6 C -0.26 -13.67 9.78 84.03 0.82 -12.85 16 7 H 0.05 2.73 8.06 -2.91 -0.02 2.70 16 8 C 0.00 0.22 5.01 84.86 0.43 0.64 16 9 N -0.92 -54.79 13.97 21.65 0.30 -54.49 16 10 Si 0.90 43.91 26.32 68.60 1.81 45.71 16 11 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 12 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 13 H -0.24 -11.01 5.92 99.48 0.59 -10.42 16 14 C 0.15 5.03 5.55 86.38 0.48 5.50 16 15 C 0.11 3.55 5.97 86.38 0.52 4.06 16 16 N -0.70 -15.72 5.56 -463.06 -2.57 -18.29 16 17 C 0.51 12.62 7.09 87.66 0.62 13.24 16 18 O -0.58 -20.80 16.28 -3.01 -0.05 -20.85 16 19 C 0.09 1.23 3.29 44.34 0.15 1.37 16 20 H 0.15 1.04 8.14 -2.38 -0.02 1.02 16 21 C -0.12 -0.93 6.12 31.63 0.19 -0.74 16 22 C -0.56 -2.62 7.49 72.64 0.54 -2.08 16 23 S 2.58 41.92 6.40 -56.49 -0.36 41.55 16 24 O -0.99 -21.87 18.14 -127.78 -2.32 -24.19 16 25 O -1.01 -25.72 18.14 -127.78 -2.32 -28.04 16 26 N -1.09 -20.54 6.62 -168.24 -1.11 -21.66 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 2.16 8.10 -2.39 -0.02 2.15 16 33 H 0.05 2.14 4.57 -2.39 -0.01 2.13 16 34 H 0.26 14.92 8.31 -92.70 -0.77 14.14 16 35 H 0.08 2.43 6.89 -2.39 -0.02 2.42 16 36 H 0.06 1.87 8.08 -2.38 -0.02 1.85 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.42 5.51 8.47 -92.71 -0.79 4.73 16 40 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.09 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.18 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.17 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.43 9.40 8.54 -92.75 -0.79 8.61 16 Total: -1.00 -86.42 373.52 -4.28 -90.70 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.67 Total: 10.72 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 5.83 Total: 19.43 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -4.81 Total: -121.50 kcal Atomic # 8 Polarization: -80.56 SS G_CDS: -6.07 Total: -86.63 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.81 Total: 45.71 kcal Atomic # 16 Polarization: 41.92 SS G_CDS: -0.36 Total: 41.55 kcal Total: -86.42 -4.28 -90.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734579834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.078 kcal (2) G-P(sol) polarization free energy of solvation -86.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds