Wall clock time and date at job start Tue Mar 31 2020 18:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65605 * 120.00005 * 2 1 4 4 O 1.42103 * 104.27344 * 308.92651 * 3 2 1 5 5 O 1.42096 * 104.27674 * 181.06825 * 3 2 1 6 6 C 1.81403 * 104.45027 * 64.99510 * 3 2 1 7 7 C 1.50698 * 109.46885 * 180.02562 * 6 3 2 8 8 O 1.21275 * 120.00395 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99610 * 179.97438 * 7 6 3 10 10 C 1.46502 * 119.99897 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47001 * 185.05238 * 10 9 7 12 12 N 1.46506 * 109.54295 * 305.14052 * 11 10 9 13 13 C 1.36939 * 119.99939 * 302.39737 * 12 11 10 14 14 H 1.08003 * 120.00031 * 354.44947 * 13 12 11 15 15 C 1.38807 * 119.99733 * 174.44100 * 13 12 11 16 16 N 1.31617 * 120.00410 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99976 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47213 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47433 * 120.00385 * 17 15 13 20 20 H 1.48504 * 109.47255 * 240.00664 * 17 15 13 21 21 C 1.53180 * 109.54064 * 184.96858 * 11 10 9 22 22 C 1.53109 * 109.15669 * 183.23864 * 21 11 10 23 23 O 1.42907 * 109.48633 * 57.47277 * 22 21 11 24 24 C 1.42906 * 114.09799 * 298.88880 * 23 22 21 25 25 C 1.53094 * 109.41477 * 61.15758 * 24 23 22 26 26 H 1.09005 * 109.46743 * 60.00081 * 1 2 3 27 27 H 1.08994 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47131 * 300.00675 * 1 2 3 29 29 H 0.96991 * 120.00021 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46862 * 59.99849 * 6 3 2 31 31 H 1.09002 * 109.47110 * 300.00073 * 6 3 2 32 32 H 0.97002 * 120.00062 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.46685 * 65.05267 * 10 9 7 34 34 H 1.08998 * 109.47105 * 305.05145 * 10 9 7 35 35 H 0.97001 * 120.00037 * 122.39366 * 12 11 10 36 36 H 0.97001 * 120.00451 * 179.97438 * 16 15 13 37 37 H 1.08993 * 109.52076 * 303.05046 * 21 11 10 38 38 H 1.08995 * 109.52586 * 63.24661 * 21 11 10 39 39 H 1.09005 * 109.40439 * 297.49266 * 22 21 11 40 40 H 1.08998 * 109.49390 * 177.50754 * 22 21 11 41 41 H 1.09005 * 109.47728 * 301.17832 * 24 23 22 42 42 H 1.08994 * 109.49232 * 181.14613 * 24 23 22 43 43 H 1.08999 * 109.52381 * 182.48901 * 25 24 23 44 44 H 1.08998 * 109.57528 * 62.33023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4342 0.0000 4 8 1.7189 2.1702 -1.0714 5 8 3.6606 1.0492 -0.0257 6 6 1.8763 2.1975 1.5920 7 6 2.5782 3.5257 1.7112 8 8 3.2891 3.9189 0.8108 9 7 2.4150 4.2771 2.8182 10 6 3.0977 5.5681 2.9343 11 6 2.8476 6.1538 4.3254 12 7 1.4057 6.2292 4.5735 13 6 0.6009 6.9393 3.7230 14 1 1.0381 7.5170 2.9221 15 6 -0.7769 6.9165 3.8904 16 7 -1.3098 6.2127 4.8666 17 14 -1.8749 7.8846 2.7299 18 1 -1.0363 8.5861 1.7250 19 1 -2.8039 6.9559 2.0372 20 1 -2.6573 8.8810 3.5046 21 6 3.4556 7.5574 4.4072 22 6 3.2716 8.1028 5.8260 23 8 3.8778 7.2096 6.7624 24 6 3.3158 5.8957 6.7635 25 6 3.5035 5.2608 5.3831 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.9500 -0.8400 0.0004 30 1 2.1957 1.5432 2.4033 31 1 0.7986 2.3498 1.6509 32 1 1.8461 3.9627 3.5382 33 1 2.7131 6.2518 2.1777 34 1 4.1685 5.4274 2.7865 35 1 1.0211 5.7760 5.3400 36 1 -2.2725 6.1971 4.9838 37 1 4.5188 7.5080 4.1725 38 1 2.9545 8.2135 3.6956 39 1 2.2074 8.1914 6.0447 40 1 3.7413 9.0834 5.9025 41 1 2.2521 5.9556 6.9944 42 1 3.8173 5.2862 7.5151 43 1 3.0366 4.2760 5.3685 44 1 4.5675 5.1627 5.1679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754742823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:34 Heat of formation + Delta-G solvation = -139.540815 kcal Electronic energy + Delta-G solvation = -28534.383886 eV Core-core repulsion = 24421.490065 eV Total energy + Delta-G solvation = -4112.893821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88844 -38.95806 -37.11082 -36.00728 -35.92017 -35.20309 -33.65574 -32.37567 -30.73606 -30.50586 -29.27693 -26.60378 -26.21976 -24.17406 -23.14847 -22.27512 -20.58150 -19.55449 -18.72605 -18.04021 -17.43097 -16.92395 -16.85199 -16.28490 -15.79501 -15.62523 -15.52716 -15.17940 -14.84824 -14.51569 -14.39244 -14.08549 -13.91297 -13.70312 -13.31281 -13.02927 -12.89129 -12.82629 -12.22456 -12.09962 -12.05028 -11.98336 -11.81184 -11.75374 -11.55310 -11.15516 -11.00184 -10.98528 -10.87824 -10.40580 -10.20228 -10.02567 -9.90654 -9.83291 -9.79203 -9.21330 -8.93790 -8.70133 -7.21688 -5.97344 -3.28421 0.09734 2.61510 2.66102 3.26721 3.31674 3.40339 3.41510 3.83250 4.13942 4.29467 4.42405 4.58566 4.76996 4.80953 5.05205 5.08828 5.15478 5.20772 5.25110 5.44510 5.45979 5.48215 5.50046 5.55136 5.68171 5.90714 5.99173 6.02242 6.10138 6.21333 6.30626 6.44029 6.46053 6.62499 6.67434 6.68365 6.77717 7.56458 7.62949 7.68123 8.19630 8.29562 9.33096 9.82038 10.18939 11.24154 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.004056 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.028292 B = 6901.789820 C = 8445.517912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.128 6.128 3 S 2.650 3.350 4 O -0.939 6.939 5 O -0.947 6.947 6 C -0.672 4.672 7 C 0.537 3.463 8 O -0.552 6.552 9 N -0.682 5.682 10 C 0.114 3.886 11 C 0.188 3.812 12 N -0.714 5.714 13 C -0.238 4.238 14 H 0.072 0.928 15 C -0.005 4.005 16 N -0.930 5.930 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.155 4.155 22 C 0.070 3.930 23 O -0.392 6.392 24 C 0.066 3.934 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.417 0.583 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.409 0.591 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -11.420 -0.638 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.887 5.887 3 S 2.736 3.264 4 O -0.928 6.928 5 O -0.937 6.937 6 C -0.800 4.800 7 C 0.320 3.680 8 O -0.433 6.433 9 N -0.331 5.331 10 C -0.012 4.012 11 C 0.096 3.904 12 N -0.356 5.356 13 C -0.369 4.369 14 H 0.090 0.910 15 C -0.202 4.202 16 N -0.578 5.578 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.195 4.195 22 C -0.006 4.006 23 O -0.311 6.311 24 C -0.011 4.011 25 C -0.191 4.191 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.251 0.749 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.245 0.755 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.802 -10.469 -1.921 12.123 hybrid contribution -1.776 -0.274 0.503 1.866 sum 4.026 -10.744 -1.418 11.560 Atomic orbital electron populations 1.21554 0.78691 1.04291 1.02330 1.55605 1.16134 1.24864 1.92136 1.04055 0.73473 0.73045 0.75802 1.93592 1.78852 1.72035 1.48348 1.93580 1.32335 1.81220 1.86522 1.31054 1.13017 1.07842 1.28130 1.18993 0.81346 0.84247 0.83392 1.90814 1.40364 1.73017 1.39081 1.45620 1.48407 1.20070 1.19001 1.21933 0.95398 0.83832 0.99992 1.19857 0.86648 0.92890 0.91005 1.42531 0.99684 1.61818 1.31614 1.19135 0.87713 1.21762 1.08288 0.91008 1.24694 0.96662 1.00251 0.98568 1.69649 1.10874 1.44655 1.32604 0.86210 0.80903 0.79383 0.80260 1.20448 1.21839 1.21832 1.22495 0.99844 0.98836 0.98359 1.22450 0.98811 0.91647 0.87738 1.87812 1.61320 1.21699 1.60294 1.22460 0.98868 0.83791 0.95966 1.22373 1.01087 0.99297 0.96298 0.91115 0.89904 0.92015 0.74914 0.82463 0.82223 0.75461 0.91011 0.92050 0.78000 0.93469 0.92426 0.90405 0.91504 0.90224 0.92339 0.89949 0.91236 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 11.03 59.85 0.66 1.19 16 2 N -1.13 -9.50 6.08 -16.63 -0.10 -9.60 16 3 S 2.65 35.14 4.60 -107.50 -0.49 34.64 16 4 O -0.94 -16.28 17.73 -57.55 -1.02 -17.30 16 5 O -0.95 -15.35 18.08 -57.55 -1.04 -16.39 16 6 C -0.67 -7.86 6.51 36.00 0.23 -7.62 16 7 C 0.54 9.05 7.85 -10.99 -0.09 8.96 16 8 O -0.55 -11.29 15.86 5.56 0.09 -11.20 16 9 N -0.68 -11.22 5.12 -60.30 -0.31 -11.53 16 10 C 0.11 1.99 4.29 -4.04 -0.02 1.97 16 11 C 0.19 3.17 0.41 -131.63 -0.05 3.12 16 12 N -0.71 -14.52 3.66 -47.06 -0.17 -14.69 16 13 C -0.24 -5.68 8.69 -15.06 -0.13 -5.81 16 14 H 0.07 1.74 6.76 -52.48 -0.35 1.39 16 15 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 16 N -0.93 -24.89 13.06 55.49 0.72 -24.17 16 17 Si 0.90 21.08 29.55 -169.99 -5.02 16.05 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.15 -2.54 4.85 -26.58 -0.13 -2.67 16 22 C 0.07 1.15 6.68 37.21 0.25 1.40 16 23 O -0.39 -6.47 10.77 -35.23 -0.38 -6.85 16 24 C 0.07 0.98 6.67 37.21 0.25 1.22 16 25 C -0.15 -2.19 4.81 -26.59 -0.13 -2.32 16 26 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.34 7.73 -51.93 -0.40 -0.06 16 29 H 0.42 2.62 8.92 -34.47 -0.31 2.31 16 30 H 0.16 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.16 1.53 7.77 -51.92 -0.40 1.13 16 32 H 0.41 6.33 7.45 -40.82 -0.30 6.03 16 33 H 0.07 1.41 7.45 -51.93 -0.39 1.03 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.38 8.38 6.67 -40.82 -0.27 8.11 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.36 7.23 -51.93 -0.38 0.99 16 39 H 0.07 1.25 7.75 -51.93 -0.40 0.85 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 0.95 7.05 -51.93 -0.37 0.59 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.93 7.41 -51.93 -0.38 0.54 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -34.43 368.65 -7.89 -42.32 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.47 Total: 13.95 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 0.75 Total: -0.79 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.14 Total: -59.99 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -2.35 Total: -51.74 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 35.14 SS G_CDS: -0.49 Total: 34.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.43 -7.89 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754742823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.219 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds