Wall clock time and date at job start Tue Mar 31 2020 18:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65605 * 120.00005 * 2 1 4 4 O 1.42103 * 104.27344 * 308.92651 * 3 2 1 5 5 O 1.42096 * 104.27674 * 181.06825 * 3 2 1 6 6 C 1.81403 * 104.45027 * 64.99510 * 3 2 1 7 7 C 1.50698 * 109.46885 * 180.02562 * 6 3 2 8 8 O 1.21275 * 120.00395 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99610 * 179.97438 * 7 6 3 10 10 C 1.46502 * 119.99897 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47001 * 185.05238 * 10 9 7 12 12 N 1.46506 * 109.54295 * 305.14052 * 11 10 9 13 13 C 1.36939 * 119.99939 * 302.39737 * 12 11 10 14 14 H 1.08003 * 120.00031 * 354.44947 * 13 12 11 15 15 C 1.38807 * 119.99733 * 174.44100 * 13 12 11 16 16 N 1.31617 * 120.00410 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99976 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47213 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47433 * 120.00385 * 17 15 13 20 20 H 1.48504 * 109.47255 * 240.00664 * 17 15 13 21 21 C 1.53180 * 109.54064 * 184.96858 * 11 10 9 22 22 C 1.53109 * 109.15669 * 183.23864 * 21 11 10 23 23 O 1.42907 * 109.48633 * 57.47277 * 22 21 11 24 24 C 1.42906 * 114.09799 * 298.88880 * 23 22 21 25 25 C 1.53094 * 109.41477 * 61.15758 * 24 23 22 26 26 H 1.09005 * 109.46743 * 60.00081 * 1 2 3 27 27 H 1.08994 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47131 * 300.00675 * 1 2 3 29 29 H 0.96991 * 120.00021 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46862 * 59.99849 * 6 3 2 31 31 H 1.09002 * 109.47110 * 300.00073 * 6 3 2 32 32 H 0.97002 * 120.00062 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.46685 * 65.05267 * 10 9 7 34 34 H 1.08998 * 109.47105 * 305.05145 * 10 9 7 35 35 H 0.97001 * 120.00037 * 122.39366 * 12 11 10 36 36 H 0.97001 * 120.00451 * 179.97438 * 16 15 13 37 37 H 1.08993 * 109.52076 * 303.05046 * 21 11 10 38 38 H 1.08995 * 109.52586 * 63.24661 * 21 11 10 39 39 H 1.09005 * 109.40439 * 297.49266 * 22 21 11 40 40 H 1.08998 * 109.49390 * 177.50754 * 22 21 11 41 41 H 1.09005 * 109.47728 * 301.17832 * 24 23 22 42 42 H 1.08994 * 109.49232 * 181.14613 * 24 23 22 43 43 H 1.08999 * 109.52381 * 182.48901 * 25 24 23 44 44 H 1.08998 * 109.57528 * 62.33023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4342 0.0000 4 8 1.7189 2.1702 -1.0714 5 8 3.6606 1.0492 -0.0257 6 6 1.8763 2.1975 1.5920 7 6 2.5782 3.5257 1.7112 8 8 3.2891 3.9189 0.8108 9 7 2.4150 4.2771 2.8182 10 6 3.0977 5.5681 2.9343 11 6 2.8476 6.1538 4.3254 12 7 1.4057 6.2292 4.5735 13 6 0.6009 6.9393 3.7230 14 1 1.0381 7.5170 2.9221 15 6 -0.7769 6.9165 3.8904 16 7 -1.3098 6.2127 4.8666 17 14 -1.8749 7.8846 2.7299 18 1 -1.0363 8.5861 1.7250 19 1 -2.8039 6.9559 2.0372 20 1 -2.6573 8.8810 3.5046 21 6 3.4556 7.5574 4.4072 22 6 3.2716 8.1028 5.8260 23 8 3.8778 7.2096 6.7624 24 6 3.3158 5.8957 6.7635 25 6 3.5035 5.2608 5.3831 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.9500 -0.8400 0.0004 30 1 2.1957 1.5432 2.4033 31 1 0.7986 2.3498 1.6509 32 1 1.8461 3.9627 3.5382 33 1 2.7131 6.2518 2.1777 34 1 4.1685 5.4274 2.7865 35 1 1.0211 5.7760 5.3400 36 1 -2.2725 6.1971 4.9838 37 1 4.5188 7.5080 4.1725 38 1 2.9545 8.2135 3.6956 39 1 2.2074 8.1914 6.0447 40 1 3.7413 9.0834 5.9025 41 1 2.2521 5.9556 6.9944 42 1 3.8173 5.2862 7.5151 43 1 3.0366 4.2760 5.3685 44 1 4.5675 5.1627 5.1679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754742823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:33 Heat of formation + Delta-G solvation = -170.161342 kcal Electronic energy + Delta-G solvation = -28535.711691 eV Core-core repulsion = 24421.490065 eV Total energy + Delta-G solvation = -4114.221627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25144 -40.30002 -38.26422 -37.40073 -37.08711 -35.92068 -35.22524 -33.99437 -31.99587 -31.63589 -30.94924 -27.93325 -26.82111 -25.94986 -24.46510 -23.60119 -21.88563 -20.59098 -20.12246 -19.19639 -19.05258 -18.13300 -17.92297 -17.39937 -17.17054 -16.84083 -16.76111 -16.46464 -16.14789 -15.93777 -15.68674 -15.41423 -15.28600 -14.72791 -14.60658 -14.25018 -14.05004 -13.77199 -13.69090 -13.43796 -13.24873 -13.19224 -13.17420 -12.96041 -12.88833 -12.70265 -12.53338 -12.22295 -12.17557 -12.09369 -11.73376 -11.60720 -11.40295 -11.15692 -10.92978 -10.53375 -10.35130 -10.10532 -9.00537 -7.93292 -5.19572 -0.92095 1.33342 1.42917 1.49010 1.53293 1.71720 2.11708 2.54588 2.80051 3.07057 3.16731 3.38272 3.45504 3.72303 3.84399 3.92195 3.96465 4.13143 4.21289 4.22592 4.24650 4.46320 4.57841 4.67125 4.72564 4.74692 4.81474 4.88358 4.88879 5.00447 5.02751 5.07568 5.19494 5.25935 5.32966 5.40276 5.61753 6.11542 6.28659 6.35801 6.36473 7.00455 7.39367 8.05793 8.34229 9.28538 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.004056 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.028292 B = 6901.789820 C = 8445.517912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -1.109 6.109 3 S 2.656 3.344 4 O -0.989 6.989 5 O -0.984 6.984 6 C -0.660 4.660 7 C 0.526 3.474 8 O -0.595 6.595 9 N -0.679 5.679 10 C 0.117 3.883 11 C 0.186 3.814 12 N -0.712 5.712 13 C -0.215 4.215 14 H 0.065 0.935 15 C -0.054 4.054 16 N -0.955 5.955 17 Si 0.943 3.057 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.298 1.298 21 C -0.153 4.153 22 C 0.075 3.925 23 O -0.397 6.397 24 C 0.064 3.936 25 C -0.145 4.145 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.429 0.571 30 H 0.204 0.796 31 H 0.186 0.814 32 H 0.415 0.585 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.380 0.620 36 H 0.249 0.751 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -13.030 0.497 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.873 5.873 3 S 2.745 3.255 4 O -0.979 6.979 5 O -0.974 6.974 6 C -0.789 4.789 7 C 0.310 3.690 8 O -0.478 6.478 9 N -0.328 5.328 10 C -0.009 4.009 11 C 0.096 3.904 12 N -0.353 5.353 13 C -0.347 4.347 14 H 0.082 0.918 15 C -0.248 4.248 16 N -0.606 5.606 17 Si 0.775 3.225 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.225 1.225 21 C -0.193 4.193 22 C -0.001 4.001 23 O -0.317 6.317 24 C -0.012 4.012 25 C -0.183 4.183 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.098 0.902 29 H 0.266 0.734 30 H 0.221 0.779 31 H 0.204 0.796 32 H 0.253 0.747 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.214 0.786 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.058 0.942 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.364 -12.099 -0.804 13.694 hybrid contribution -1.885 0.217 0.175 1.905 sum 4.479 -11.882 -0.629 12.714 Atomic orbital electron populations 1.21878 0.77159 1.06520 1.02649 1.55117 1.16866 1.23577 1.91721 1.03432 0.72698 0.73457 0.75868 1.93534 1.79436 1.73739 1.51181 1.93524 1.34772 1.81867 1.87202 1.30971 1.14070 1.05487 1.28415 1.19755 0.80931 0.85698 0.82569 1.90800 1.42268 1.74371 1.40366 1.45608 1.48275 1.19617 1.19262 1.21823 0.96008 0.83937 0.99123 1.20035 0.84782 0.93906 0.91721 1.42518 1.01006 1.61080 1.30731 1.19227 0.87875 1.20211 1.07397 0.91756 1.25108 0.97762 1.01945 0.99967 1.69727 1.10399 1.46450 1.33981 0.85540 0.79678 0.78289 0.79014 1.20489 1.22481 1.22532 1.22465 1.00805 0.98007 0.98060 1.22372 0.97313 0.92812 0.87622 1.87814 1.61230 1.22403 1.60212 1.22594 0.98184 0.83474 0.96989 1.22339 1.01835 0.99207 0.94904 0.92512 0.86739 0.90172 0.73363 0.77866 0.79637 0.74694 0.93966 0.90956 0.78611 0.94180 0.90428 0.92074 0.94439 0.88287 0.94207 0.86956 0.89739 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 11.03 127.77 1.41 2.10 16 2 N -1.11 -16.21 6.08 -206.53 -1.25 -17.47 16 3 S 2.66 67.93 4.60 -56.49 -0.26 67.68 16 4 O -0.99 -34.73 17.73 -127.64 -2.26 -36.99 16 5 O -0.98 -31.56 18.08 -127.64 -2.31 -33.87 16 6 C -0.66 -13.70 6.51 71.24 0.46 -13.24 16 7 C 0.53 17.02 7.85 87.66 0.69 17.71 16 8 O -0.59 -24.38 15.86 -3.01 -0.05 -24.42 16 9 N -0.68 -21.25 5.12 -463.07 -2.37 -23.62 16 10 C 0.12 3.97 4.29 86.38 0.37 4.34 16 11 C 0.19 6.02 0.41 3.72 0.00 6.03 16 12 N -0.71 -28.48 3.66 -302.80 -1.11 -29.59 16 13 C -0.21 -10.23 8.69 84.03 0.73 -9.50 16 14 H 0.06 3.15 6.76 -2.91 -0.02 3.13 16 15 C -0.05 -2.79 5.50 84.86 0.47 -2.32 16 16 N -0.95 -51.17 13.06 21.65 0.28 -50.89 16 17 Si 0.94 43.63 29.55 68.60 2.03 45.66 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 21 C -0.15 -4.84 4.85 30.69 0.15 -4.69 16 22 C 0.08 2.38 6.68 72.02 0.48 2.86 16 23 O -0.40 -12.22 10.77 -148.98 -1.60 -13.82 16 24 C 0.06 1.73 6.67 72.01 0.48 2.21 16 25 C -0.14 -3.76 4.81 30.68 0.15 -3.61 16 26 H 0.06 0.80 8.04 -2.38 -0.02 0.78 16 27 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.59 7.73 -2.39 -0.02 0.58 16 29 H 0.43 4.34 8.92 -96.75 -0.86 3.48 16 30 H 0.20 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.19 2.94 7.77 -2.39 -0.02 2.92 16 32 H 0.42 11.90 7.45 -92.71 -0.69 11.21 16 33 H 0.04 1.68 7.45 -2.39 -0.02 1.66 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.38 16.26 6.67 -92.71 -0.62 15.64 16 36 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 2.13 7.23 -2.39 -0.02 2.11 16 39 H 0.04 1.40 7.75 -2.38 -0.02 1.38 16 40 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.04 1.24 7.05 -2.38 -0.02 1.22 16 42 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.08 1.96 7.41 -2.39 -0.02 1.95 16 44 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -76.52 368.65 -4.64 -81.16 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -1.12 Total: 34.28 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 5.39 Total: 1.89 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -4.45 Total: -121.56 kcal Atomic # 8 Polarization: -102.88 SS G_CDS: -6.22 Total: -109.10 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 67.93 SS G_CDS: -0.26 Total: 67.68 kcal Total: -76.52 -4.64 -81.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754742823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.999 kcal (2) G-P(sol) polarization free energy of solvation -76.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds