Wall clock time and date at job start Tue Mar 31 2020 18:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00103 * 2 1 4 4 S 1.65604 * 119.99915 * 179.97438 * 2 1 3 5 5 O 1.42099 * 104.27698 * 333.93196 * 4 2 1 6 6 O 1.42095 * 104.27479 * 206.06909 * 4 2 1 7 7 C 1.81403 * 104.44709 * 89.99988 * 4 2 1 8 8 C 1.52998 * 109.46945 * 179.97438 * 7 4 2 9 9 C 1.50700 * 109.47009 * 180.02562 * 8 7 4 10 10 O 1.21280 * 120.00210 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99862 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46928 * 179.97438 * 12 11 9 14 14 O 1.42899 * 113.41348 * 313.20372 * 13 12 11 15 15 C 1.53496 * 114.20479 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98324 * 220.34620 * 15 13 12 17 17 C 1.36944 * 136.05683 * 207.08528 * 16 15 13 18 18 H 1.08004 * 119.99874 * 6.90177 * 17 16 15 19 19 C 1.38808 * 119.99887 * 186.89762 * 17 16 15 20 20 N 1.31620 * 119.99758 * 172.36849 * 19 17 16 21 21 Si 1.86803 * 120.00116 * 352.64805 * 19 17 16 22 22 H 1.48502 * 109.46980 * 175.03997 * 21 19 17 23 23 H 1.48501 * 109.46832 * 295.03703 * 21 19 17 24 24 H 1.48495 * 109.47214 * 55.03946 * 21 19 17 25 25 C 1.47058 * 87.88471 * 27.34220 * 16 15 13 26 26 H 1.09003 * 109.47377 * 270.00156 * 1 2 3 27 27 H 1.09005 * 109.46967 * 29.99720 * 1 2 3 28 28 H 1.08999 * 109.47139 * 149.99895 * 1 2 3 29 29 H 1.09004 * 109.47147 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46881 * 300.00020 * 3 2 1 31 31 H 1.09003 * 109.47189 * 59.99700 * 3 2 1 32 32 H 1.09001 * 109.47263 * 59.99808 * 7 4 2 33 33 H 1.08998 * 109.47413 * 300.00012 * 7 4 2 34 34 H 1.09004 * 109.47016 * 60.00403 * 8 7 4 35 35 H 1.08998 * 109.47177 * 300.00282 * 8 7 4 36 36 H 0.96997 * 119.99638 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47149 * 60.00719 * 12 11 9 38 38 H 1.08998 * 109.47686 * 300.00064 * 12 11 9 39 39 H 0.96703 * 113.99848 * 46.79570 * 14 13 12 40 40 H 1.09007 * 113.46615 * 105.56627 * 15 13 12 41 41 H 1.08998 * 113.52551 * 335.13818 * 15 13 12 42 42 H 0.96999 * 119.99710 * 5.38439 * 20 19 17 43 43 H 1.09001 * 113.46851 * 87.44175 * 25 16 15 44 44 H 1.09001 * 113.47037 * 217.87480 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.3969 -2.3559 0.6062 6 8 3.5394 -1.1189 0.6057 7 6 2.5192 -1.8269 -1.7559 8 6 3.2818 -3.1466 -1.8892 9 6 3.4704 -3.4725 -3.3484 10 8 3.0370 -2.7234 -4.1980 11 7 4.1197 -4.5971 -3.7093 12 6 4.3024 -4.9142 -5.1278 13 6 5.0652 -6.2339 -5.2611 14 8 6.2152 -6.3129 -4.4166 15 6 5.3180 -6.6710 -6.7107 16 7 5.0149 -8.0483 -6.2935 17 6 5.3629 -9.3047 -6.7126 18 1 6.1093 -9.4294 -7.4833 19 6 4.7565 -10.4178 -6.1470 20 7 4.9772 -11.6141 -6.6496 21 14 3.6209 -10.2171 -4.6774 22 1 3.0116 -11.5286 -4.3400 23 1 4.3993 -9.7192 -3.5149 24 1 2.5493 -9.2441 -5.0091 25 6 4.1686 -7.4826 -5.2322 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2692 1.0695 -0.0005 30 1 1.9341 1.8403 -0.8900 31 1 1.9341 1.8403 0.8900 32 1 3.0865 -1.0297 -2.2363 33 1 1.5451 -1.9197 -2.2359 34 1 2.7149 -3.9440 -1.4087 35 1 4.2560 -3.0534 -1.4093 36 1 4.4659 -5.1965 -3.0297 37 1 4.8698 -4.1171 -5.6081 38 1 3.3283 -5.0071 -5.6078 39 1 6.0529 -6.0367 -3.5042 40 1 6.3502 -6.5320 -7.0322 41 1 4.5974 -6.2637 -7.4199 42 1 5.6230 -11.7282 -7.3643 43 1 3.1443 -7.2890 -5.5507 44 1 4.2214 -8.0351 -4.2941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754779259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:47 Heat of formation + Delta-G solvation = -76.590821 kcal Electronic energy + Delta-G solvation = -27070.332043 eV Core-core repulsion = 22960.167938 eV Total energy + Delta-G solvation = -4110.164105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.30851 -39.15409 -37.62607 -36.73960 -36.31218 -35.41565 -34.29883 -33.65607 -32.30861 -29.21164 -28.62436 -26.71896 -25.59687 -25.33591 -24.51493 -21.53134 -20.84130 -19.70264 -19.36958 -18.56304 -17.76871 -17.48195 -17.01887 -16.96349 -16.28110 -16.17192 -15.95605 -15.18370 -15.01587 -14.83969 -14.49220 -14.33650 -13.93399 -13.65950 -13.52877 -13.28994 -13.12450 -13.05741 -13.03063 -12.92589 -12.74257 -12.53617 -12.19499 -12.12923 -12.03309 -11.96080 -11.68186 -11.34680 -11.07129 -10.59572 -10.44177 -10.15331 -10.10513 -9.61066 -9.39957 -9.24559 -8.99945 -8.90295 -7.20322 -6.34912 -3.25653 -0.28449 2.08706 2.30652 2.80768 3.33853 3.36059 3.38796 3.60277 3.66437 3.84687 4.14339 4.17937 4.27188 4.38277 4.53655 4.55530 4.69979 4.79170 4.84026 4.86790 4.95829 4.96061 5.04590 5.23722 5.28255 5.30674 5.40483 5.41874 5.47511 5.72451 5.92249 5.95002 6.05100 6.07336 6.19743 6.27978 6.46302 7.02759 7.12827 7.75868 7.90129 8.20712 8.94351 9.45884 10.29549 11.17876 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023615 B = 0.002283 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.424568 B =12260.887110 C =12785.709361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.007 6.007 3 C 0.084 3.916 4 S 2.610 3.390 5 O -0.949 6.949 6 O -0.951 6.951 7 C -0.613 4.613 8 C -0.138 4.138 9 C 0.524 3.476 10 O -0.535 6.535 11 N -0.726 5.726 12 C 0.105 3.895 13 C 0.070 3.930 14 O -0.518 6.518 15 C 0.140 3.860 16 N -0.617 5.617 17 C -0.301 4.301 18 H 0.084 0.916 19 C -0.026 4.026 20 N -0.933 5.933 21 Si 1.074 2.926 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.288 1.288 25 C 0.077 3.923 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.400 0.600 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.362 0.638 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.261 0.739 43 H 0.054 0.946 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.660 27.605 14.348 32.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.846 5.846 3 C -0.061 4.061 4 S 2.702 3.298 5 O -0.939 6.939 6 O -0.941 6.941 7 C -0.742 4.742 8 C -0.179 4.179 9 C 0.308 3.692 10 O -0.411 6.411 11 N -0.380 5.380 12 C -0.020 4.020 13 C 0.026 3.974 14 O -0.321 6.321 15 C 0.012 3.988 16 N -0.345 5.345 17 C -0.427 4.427 18 H 0.102 0.898 19 C -0.225 4.225 20 N -0.576 5.576 21 Si 0.906 3.094 22 H -0.222 1.222 23 H -0.222 1.222 24 H -0.215 1.215 25 C -0.050 4.050 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.235 0.765 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.209 0.791 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.367 26.377 14.836 31.398 hybrid contribution 0.790 0.934 -1.028 1.598 sum -7.577 27.310 13.808 31.526 Atomic orbital electron populations 1.21493 0.77955 1.03203 1.02635 1.57323 1.15444 1.21799 1.90059 1.21604 0.97101 0.84982 1.02448 1.05177 0.74009 0.73247 0.77365 1.93619 1.64463 1.62466 1.73328 1.93606 1.44167 1.82878 1.73463 1.30477 1.10840 1.05959 1.26883 1.21386 1.03076 0.96699 0.96772 1.20142 0.77693 0.80879 0.90468 1.90715 1.48978 1.48919 1.52494 1.45955 1.58547 1.24276 1.09210 1.22000 1.01436 0.97396 0.81132 1.23334 0.87259 0.91355 0.95410 1.86697 1.32922 1.89568 1.22932 1.22332 1.00045 0.85879 0.90500 1.45700 1.53707 1.00775 1.34299 1.20115 1.22057 0.79694 1.20800 0.89821 1.25744 1.01860 0.91677 1.03201 1.70918 1.35399 1.22218 1.29043 0.83651 0.75822 0.74414 0.75468 1.22165 1.22238 1.21534 1.23504 0.94827 0.92174 0.94449 0.92091 0.90818 0.90848 0.89485 0.91956 0.91585 0.84197 0.84185 0.86958 0.87021 0.76526 0.90327 0.89761 0.79119 0.92445 0.92663 0.92876 0.92844 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.24 59.85 0.61 1.03 16 2 N -1.01 -5.91 3.52 -129.20 -0.45 -6.37 16 3 C 0.08 0.37 10.62 59.85 0.64 1.00 16 4 S 2.61 19.71 5.37 -107.50 -0.58 19.13 16 5 O -0.95 -9.99 17.09 -57.54 -0.98 -10.97 16 6 O -0.95 -9.70 16.57 -57.54 -0.95 -10.66 16 7 C -0.61 -3.96 5.47 37.16 0.20 -3.76 16 8 C -0.14 -0.98 5.71 -27.88 -0.16 -1.14 16 9 C 0.52 5.55 7.83 -10.98 -0.09 5.46 16 10 O -0.53 -7.50 15.98 5.56 0.09 -7.41 16 11 N -0.73 -7.44 5.34 -60.29 -0.32 -7.76 16 12 C 0.10 1.34 5.43 -4.04 -0.02 1.32 16 13 C 0.07 1.13 1.74 -89.97 -0.16 0.97 16 14 O -0.52 -8.36 13.56 -35.23 -0.48 -8.84 16 15 C 0.14 2.70 8.10 -8.52 -0.07 2.63 16 16 N -0.62 -15.15 3.69 -184.62 -0.68 -15.84 16 17 C -0.30 -8.75 11.08 -15.06 -0.17 -8.92 16 18 H 0.08 2.57 8.05 -52.48 -0.42 2.15 16 19 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 20 N -0.93 -29.63 13.70 55.49 0.76 -28.87 16 21 Si 1.07 26.68 25.13 -169.99 -4.27 22.41 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 23 H -0.29 -6.87 6.64 56.52 0.38 -6.49 16 24 H -0.29 -6.59 6.13 56.52 0.35 -6.25 16 25 C 0.08 1.54 5.14 -8.39 -0.04 1.50 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 28 H 0.07 0.30 7.79 -51.93 -0.40 -0.11 16 29 H 0.09 0.40 6.87 -51.93 -0.36 0.04 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.14 0.81 8.10 -51.92 -0.42 0.39 16 33 H 0.14 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.40 3.09 6.95 -40.82 -0.28 2.80 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.12 7.89 -51.93 -0.41 0.71 16 39 H 0.36 3.96 7.21 45.56 0.33 4.29 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 43 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 44 H 0.06 1.16 4.67 -51.93 -0.24 0.92 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -41.10 371.70 -7.67 -48.77 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.06 Total: 1.60 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 0.65 Total: -0.79 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.70 Total: -58.84 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -2.33 Total: -37.88 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.27 Total: 22.41 kcal Atomic # 16 Polarization: 19.71 SS G_CDS: -0.58 Total: 19.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -41.10 -7.67 -48.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754779259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.819 kcal (2) G-P(sol) polarization free energy of solvation -41.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds