Wall clock time and date at job start Tue Mar 31 2020 18:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00103 * 2 1 4 4 S 1.65604 * 119.99915 * 179.97438 * 2 1 3 5 5 O 1.42099 * 104.27698 * 333.93196 * 4 2 1 6 6 O 1.42095 * 104.27479 * 206.06909 * 4 2 1 7 7 C 1.81403 * 104.44709 * 89.99988 * 4 2 1 8 8 C 1.52998 * 109.46945 * 179.97438 * 7 4 2 9 9 C 1.50700 * 109.47009 * 180.02562 * 8 7 4 10 10 O 1.21280 * 120.00210 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99862 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46928 * 179.97438 * 12 11 9 14 14 O 1.42899 * 113.41348 * 313.20372 * 13 12 11 15 15 C 1.53496 * 114.20479 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98324 * 220.34620 * 15 13 12 17 17 C 1.36944 * 136.05683 * 207.08528 * 16 15 13 18 18 H 1.08004 * 119.99874 * 6.90177 * 17 16 15 19 19 C 1.38808 * 119.99887 * 186.89762 * 17 16 15 20 20 N 1.31620 * 119.99758 * 172.36849 * 19 17 16 21 21 Si 1.86803 * 120.00116 * 352.64805 * 19 17 16 22 22 H 1.48502 * 109.46980 * 175.03997 * 21 19 17 23 23 H 1.48501 * 109.46832 * 295.03703 * 21 19 17 24 24 H 1.48495 * 109.47214 * 55.03946 * 21 19 17 25 25 C 1.47058 * 87.88471 * 27.34220 * 16 15 13 26 26 H 1.09003 * 109.47377 * 270.00156 * 1 2 3 27 27 H 1.09005 * 109.46967 * 29.99720 * 1 2 3 28 28 H 1.08999 * 109.47139 * 149.99895 * 1 2 3 29 29 H 1.09004 * 109.47147 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46881 * 300.00020 * 3 2 1 31 31 H 1.09003 * 109.47189 * 59.99700 * 3 2 1 32 32 H 1.09001 * 109.47263 * 59.99808 * 7 4 2 33 33 H 1.08998 * 109.47413 * 300.00012 * 7 4 2 34 34 H 1.09004 * 109.47016 * 60.00403 * 8 7 4 35 35 H 1.08998 * 109.47177 * 300.00282 * 8 7 4 36 36 H 0.96997 * 119.99638 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47149 * 60.00719 * 12 11 9 38 38 H 1.08998 * 109.47686 * 300.00064 * 12 11 9 39 39 H 0.96703 * 113.99848 * 46.79570 * 14 13 12 40 40 H 1.09007 * 113.46615 * 105.56627 * 15 13 12 41 41 H 1.08998 * 113.52551 * 335.13818 * 15 13 12 42 42 H 0.96999 * 119.99710 * 5.38439 * 20 19 17 43 43 H 1.09001 * 113.46851 * 87.44175 * 25 16 15 44 44 H 1.09001 * 113.47037 * 217.87480 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.3969 -2.3559 0.6062 6 8 3.5394 -1.1189 0.6057 7 6 2.5192 -1.8269 -1.7559 8 6 3.2818 -3.1466 -1.8892 9 6 3.4704 -3.4725 -3.3484 10 8 3.0370 -2.7234 -4.1980 11 7 4.1197 -4.5971 -3.7093 12 6 4.3024 -4.9142 -5.1278 13 6 5.0652 -6.2339 -5.2611 14 8 6.2152 -6.3129 -4.4166 15 6 5.3180 -6.6710 -6.7107 16 7 5.0149 -8.0483 -6.2935 17 6 5.3629 -9.3047 -6.7126 18 1 6.1093 -9.4294 -7.4833 19 6 4.7565 -10.4178 -6.1470 20 7 4.9772 -11.6141 -6.6496 21 14 3.6209 -10.2171 -4.6774 22 1 3.0116 -11.5286 -4.3400 23 1 4.3993 -9.7192 -3.5149 24 1 2.5493 -9.2441 -5.0091 25 6 4.1686 -7.4826 -5.2322 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2692 1.0695 -0.0005 30 1 1.9341 1.8403 -0.8900 31 1 1.9341 1.8403 0.8900 32 1 3.0865 -1.0297 -2.2363 33 1 1.5451 -1.9197 -2.2359 34 1 2.7149 -3.9440 -1.4087 35 1 4.2560 -3.0534 -1.4093 36 1 4.4659 -5.1965 -3.0297 37 1 4.8698 -4.1171 -5.6081 38 1 3.3283 -5.0071 -5.6078 39 1 6.0529 -6.0367 -3.5042 40 1 6.3502 -6.5320 -7.0322 41 1 4.5974 -6.2637 -7.4199 42 1 5.6230 -11.7282 -7.3643 43 1 3.1443 -7.2890 -5.5507 44 1 4.2214 -8.0351 -4.2941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754779259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:47 Heat of formation + Delta-G solvation = -114.672918 kcal Electronic energy + Delta-G solvation = -27071.983406 eV Core-core repulsion = 22960.167938 eV Total energy + Delta-G solvation = -4111.815468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41095 -40.35528 -38.29179 -37.23129 -36.87866 -36.81340 -35.32655 -34.46017 -34.22603 -30.68791 -28.93987 -28.08893 -27.17595 -25.97044 -25.21563 -23.19599 -21.67092 -21.21276 -19.91585 -19.75384 -19.15768 -18.33620 -17.98458 -17.53682 -17.42622 -17.00206 -16.77134 -16.40407 -15.93184 -15.73202 -15.53696 -15.31634 -15.19156 -15.06961 -14.75152 -14.33357 -14.08272 -14.00864 -13.61631 -13.52472 -13.45650 -13.37312 -13.26217 -13.19737 -12.85375 -12.59300 -12.50865 -12.48463 -12.39014 -11.95873 -11.89840 -11.78223 -11.35205 -11.05021 -11.00913 -10.64010 -10.19474 -10.00083 -9.22952 -8.68363 -5.49217 -0.83775 1.34785 1.47318 1.53445 1.59745 1.66833 2.01547 2.53541 2.80516 2.86958 2.95129 3.12371 3.16803 3.28970 3.32005 3.73345 3.75229 3.81340 3.88731 4.25164 4.36591 4.46244 4.48238 4.52082 4.56200 4.60846 4.63941 4.73734 4.76564 4.78326 4.81624 4.98761 5.00926 5.01575 5.07564 5.14715 5.25719 5.55834 5.91752 6.37388 6.66754 6.75090 7.11817 7.29245 8.22094 8.87328 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023615 B = 0.002283 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.424568 B =12260.887110 C =12785.709361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.010 6.010 3 C 0.076 3.924 4 S 2.626 3.374 5 O -0.982 6.982 6 O -0.981 6.981 7 C -0.602 4.602 8 C -0.145 4.145 9 C 0.525 3.475 10 O -0.571 6.571 11 N -0.721 5.721 12 C 0.119 3.881 13 C 0.105 3.895 14 O -0.536 6.536 15 C 0.128 3.872 16 N -0.655 5.655 17 C -0.289 4.289 18 H 0.046 0.954 19 C -0.090 4.090 20 N -0.971 5.971 21 Si 1.113 2.887 22 H -0.306 1.306 23 H -0.270 1.270 24 H -0.255 1.255 25 C 0.067 3.933 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.414 0.586 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.387 0.613 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.245 0.755 43 H 0.070 0.930 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.930 30.447 16.033 35.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.849 5.849 3 C -0.069 4.069 4 S 2.720 3.280 5 O -0.972 6.972 6 O -0.971 6.971 7 C -0.733 4.733 8 C -0.186 4.186 9 C 0.312 3.688 10 O -0.450 6.450 11 N -0.375 5.375 12 C -0.006 4.006 13 C 0.062 3.938 14 O -0.344 6.344 15 C 0.002 3.998 16 N -0.383 5.383 17 C -0.417 4.417 18 H 0.064 0.936 19 C -0.281 4.281 20 N -0.616 5.616 21 Si 0.939 3.061 22 H -0.235 1.235 23 H -0.196 1.196 24 H -0.180 1.180 25 C -0.058 4.058 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.237 0.763 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.620 29.295 16.571 35.005 hybrid contribution 1.272 0.168 -1.639 2.082 sum -8.348 29.463 14.932 34.070 Atomic orbital electron populations 1.21689 0.77142 1.04531 1.02865 1.57189 1.16007 1.21627 1.90100 1.21791 0.96790 0.84537 1.03804 1.04494 0.72979 0.73000 0.77515 1.93573 1.65140 1.63841 1.74653 1.93563 1.45522 1.83346 1.74705 1.30382 1.11445 1.06167 1.25304 1.21576 1.04978 0.97547 0.94545 1.20620 0.76617 0.80109 0.91475 1.90709 1.50446 1.50018 1.53783 1.45851 1.58562 1.24687 1.08412 1.21678 1.00863 0.95152 0.82905 1.22733 0.86322 0.91602 0.93155 1.86654 1.33023 1.89840 1.24843 1.22641 1.00197 0.83471 0.93450 1.45782 1.55180 1.00847 1.36539 1.19952 1.20266 0.82516 1.18927 0.93604 1.27221 1.03899 0.91158 1.05861 1.71032 1.36767 1.23799 1.30012 0.83225 0.75190 0.74712 0.73003 1.23475 1.19633 1.17998 1.23788 0.95617 0.93476 0.92888 0.92504 0.88617 0.90479 0.89928 0.89896 0.91026 0.83313 0.83499 0.84935 0.84615 0.74887 0.89677 0.89632 0.76287 0.93367 0.90156 0.94631 0.91265 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.24 127.77 1.31 1.90 16 2 N -1.01 -9.95 3.52 -562.68 -1.98 -11.93 16 3 C 0.08 0.51 10.62 127.77 1.36 1.86 16 4 S 2.63 34.90 5.37 -56.49 -0.30 34.60 16 5 O -0.98 -19.29 17.09 -127.65 -2.18 -21.47 16 6 O -0.98 -18.61 16.57 -127.65 -2.12 -20.72 16 7 C -0.60 -6.05 5.47 71.98 0.39 -5.65 16 8 C -0.15 -1.53 5.71 29.85 0.17 -1.36 16 9 C 0.53 9.18 7.83 87.66 0.69 9.86 16 10 O -0.57 -14.22 15.98 -3.03 -0.05 -14.27 16 11 N -0.72 -11.74 5.34 -463.06 -2.47 -14.22 16 12 C 0.12 2.59 5.43 86.38 0.47 3.06 16 13 C 0.10 3.07 1.74 -10.37 -0.02 3.05 16 14 O -0.54 -15.61 13.56 -148.98 -2.02 -17.63 16 15 C 0.13 4.73 8.10 83.17 0.67 5.41 16 16 N -0.66 -31.53 3.69 -738.49 -2.73 -34.26 16 17 C -0.29 -17.20 11.08 84.03 0.93 -16.27 16 18 H 0.05 2.97 8.05 -2.91 -0.02 2.95 16 19 C -0.09 -5.49 5.50 84.86 0.47 -5.02 16 20 N -0.97 -63.81 13.70 21.65 0.30 -63.51 16 21 Si 1.11 52.91 25.13 68.60 1.72 54.64 16 22 H -0.31 -15.06 7.11 99.48 0.71 -14.36 16 23 H -0.27 -11.60 6.64 99.48 0.66 -10.94 16 24 H -0.26 -10.61 6.13 99.48 0.61 -10.00 16 25 C 0.07 2.49 5.14 83.26 0.43 2.92 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.10 0.25 8.07 -2.38 -0.02 0.23 16 28 H 0.08 0.49 7.79 -2.39 -0.02 0.47 16 29 H 0.08 0.63 6.87 -2.39 -0.02 0.62 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.15 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.15 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.41 4.47 6.95 -92.71 -0.64 3.82 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.92 7.89 -2.39 -0.02 1.90 16 39 H 0.39 6.86 7.21 -74.06 -0.53 6.33 16 40 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 42 H 0.24 16.21 8.73 -92.71 -0.81 15.40 16 43 H 0.07 2.40 7.50 -2.39 -0.02 2.38 16 44 H 0.05 2.05 4.67 -2.39 -0.01 2.04 16 Total: -1.00 -91.46 371.70 -5.29 -96.75 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.33 Total: 12.26 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.86 Total: -0.24 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -6.88 Total: -123.92 kcal Atomic # 8 Polarization: -67.73 SS G_CDS: -6.37 Total: -74.09 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 1.72 Total: 54.64 kcal Atomic # 16 Polarization: 34.90 SS G_CDS: -0.30 Total: 34.60 kcal Total: -91.46 -5.29 -96.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754779259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.924 kcal (2) G-P(sol) polarization free energy of solvation -91.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds