Wall clock time and date at job start Tue Mar 31 2020 18:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 119.99701 * 2 1 4 4 S 1.65597 * 120.00200 * 179.97438 * 2 1 3 5 5 O 1.42102 * 106.40325 * 336.46175 * 4 2 1 6 6 O 1.42093 * 106.40475 * 203.54202 * 4 2 1 7 7 N 1.65596 * 107.21801 * 89.99956 * 4 2 1 8 8 C 1.46502 * 120.00234 * 270.00150 * 7 4 2 9 9 C 1.46506 * 119.99829 * 89.99878 * 7 4 2 10 10 C 1.50703 * 109.47289 * 265.00122 * 9 7 4 11 11 O 1.21279 * 119.99926 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 7 13 13 C 1.47426 * 125.64840 * 0.02967 * 12 10 9 14 14 C 1.54911 * 104.82814 * 204.08977 * 13 12 10 15 15 C 1.55154 * 101.58164 * 322.98944 * 14 13 12 16 16 O 1.42903 * 110.72095 * 276.96010 * 15 14 13 17 17 C 1.50700 * 110.71932 * 153.86772 * 15 14 13 18 18 H 1.08000 * 119.99795 * 241.45112 * 17 15 14 19 19 C 1.37881 * 120.00193 * 61.45310 * 17 15 14 20 20 N 1.31516 * 119.99751 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00140 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47085 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46879 * 120.00097 * 21 19 17 24 24 H 1.48503 * 109.47403 * 240.00164 * 21 19 17 25 25 C 1.47022 * 125.64428 * 179.71702 * 12 10 9 26 26 H 1.08995 * 109.47070 * 239.99944 * 1 2 3 27 27 H 1.09000 * 109.47217 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47035 * 120.00441 * 1 2 3 29 29 H 1.09003 * 109.47188 * 269.99668 * 3 2 1 30 30 H 1.09001 * 109.47651 * 29.99725 * 3 2 1 31 31 H 1.08996 * 109.47468 * 149.99802 * 3 2 1 32 32 H 1.08999 * 109.47196 * 269.99927 * 8 7 4 33 33 H 1.08998 * 109.46736 * 30.00223 * 8 7 4 34 34 H 1.08999 * 109.47053 * 149.99728 * 8 7 4 35 35 H 1.09001 * 109.47060 * 25.00572 * 9 7 4 36 36 H 1.09004 * 109.47073 * 145.00061 * 9 7 4 37 37 H 1.09003 * 110.36881 * 322.92401 * 13 12 10 38 38 H 1.08999 * 110.36845 * 85.25357 * 13 12 10 39 39 H 1.08997 * 111.00769 * 81.06688 * 14 13 12 40 40 H 1.09004 * 111.00350 * 204.87751 * 14 13 12 41 41 H 0.96699 * 114.00284 * 298.55269 * 16 15 14 42 42 H 0.97000 * 120.00097 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.88079 * 298.39125 * 25 12 10 44 44 H 1.08999 * 109.88211 * 59.56352 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4114 -2.4063 0.5455 6 8 3.5759 -1.1565 0.5450 7 7 2.5382 -1.8593 -1.5809 8 6 1.5479 -2.6818 -2.2803 9 6 3.7454 -1.4129 -2.2808 10 6 3.4455 -0.1477 -3.0427 11 8 2.3331 0.3340 -3.0044 12 7 4.4138 0.4490 -3.7657 13 6 5.8031 -0.0261 -3.8988 14 6 6.6215 1.2385 -4.2606 15 6 5.6317 1.9964 -5.1842 16 8 5.7042 1.4969 -6.5212 17 6 5.9039 3.4784 -5.1554 18 1 5.1435 4.1602 -4.8042 19 6 7.1235 3.9637 -5.5773 20 7 8.0492 3.1333 -6.0055 21 14 7.4606 5.8007 -5.5422 22 1 6.2660 6.5133 -5.0224 23 1 8.6226 6.0739 -4.6589 24 1 7.7614 6.2752 -6.9169 25 6 4.2578 1.6780 -4.5575 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 2.3792 1.5834 -1.0277 30 1 1.6084 2.0284 0.5138 31 1 3.1498 1.1385 0.5138 32 1 1.7931 -3.7357 -2.1492 33 1 0.5574 -2.4853 -1.8698 34 1 1.5563 -2.4361 -3.3422 35 1 4.5361 -1.2215 -1.5554 36 1 4.0697 -2.1874 -2.9759 37 1 6.1522 -0.4469 -2.9558 38 1 5.8762 -0.7661 -4.6957 39 1 6.8509 1.8235 -3.3701 40 1 7.5328 0.9738 -4.7971 41 1 6.5720 1.6033 -6.9343 42 1 8.9073 3.4747 -6.3020 43 1 3.5174 1.5219 -5.3421 44 1 3.9483 2.4988 -3.9106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771762710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:54 Heat of formation + Delta-G solvation = -163.210406 kcal Electronic energy + Delta-G solvation = -29044.276500 eV Core-core repulsion = 24930.356289 eV Total energy + Delta-G solvation = -4113.920212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.07751 -39.11246 -38.52478 -37.13803 -37.01175 -36.75046 -36.01782 -34.18412 -31.70430 -30.32558 -29.42234 -28.95814 -27.12188 -25.98144 -25.47317 -23.83316 -21.63991 -20.60575 -19.88183 -19.18062 -18.98082 -18.65759 -18.03264 -17.59362 -16.93101 -16.78270 -16.57608 -16.05183 -15.78700 -15.57204 -15.33388 -15.17431 -14.74657 -14.53259 -14.17100 -14.11486 -13.86020 -13.77631 -13.61870 -13.44917 -13.34017 -13.22311 -13.21003 -13.08795 -12.75531 -12.69285 -12.65962 -12.64374 -12.48899 -12.39660 -12.25229 -11.95048 -11.28017 -11.19049 -10.63451 -10.18803 -10.09792 -9.98277 -9.55337 -8.23348 -6.36974 -0.54904 1.40647 1.45718 1.54393 1.59442 1.60416 2.11719 2.34768 2.41017 3.02701 3.14721 3.51099 3.61877 3.84153 3.90683 4.03412 4.20748 4.32180 4.34455 4.43337 4.46917 4.49387 4.63456 4.66198 4.70663 4.71920 4.77859 4.91203 4.91841 4.95343 4.97426 5.05151 5.19480 5.22702 5.30326 5.50025 5.57925 5.61372 5.79196 6.10766 6.60968 6.68463 7.14132 7.33355 7.42735 8.82508 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.003280 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.460556 B = 8533.247852 C = 8999.980629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.007 6.007 3 C 0.086 3.914 4 S 2.798 3.202 5 O -0.990 6.990 6 O -0.999 6.999 7 N -0.990 5.990 8 C 0.093 3.907 9 C 0.104 3.896 10 C 0.495 3.505 11 O -0.561 6.561 12 N -0.610 5.610 13 C 0.098 3.902 14 C -0.127 4.127 15 C 0.233 3.767 16 O -0.592 6.592 17 C -0.561 4.561 18 H 0.050 0.950 19 C 0.039 3.961 20 N -0.904 5.904 21 Si 0.955 3.045 22 H -0.276 1.276 23 H -0.277 1.277 24 H -0.280 1.280 25 C 0.135 3.865 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.379 0.621 42 H 0.271 0.729 43 H 0.043 0.957 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 -10.088 8.988 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.849 5.849 3 C -0.060 4.060 4 S 2.806 3.194 5 O -0.974 6.974 6 O -0.983 6.983 7 N -0.829 5.829 8 C -0.051 4.051 9 C -0.025 4.025 10 C 0.282 3.718 11 O -0.440 6.440 12 N -0.343 5.343 13 C -0.024 4.024 14 C -0.166 4.166 15 C 0.193 3.807 16 O -0.401 6.401 17 C -0.600 4.600 18 H 0.068 0.932 19 C -0.162 4.162 20 N -0.543 5.543 21 Si 0.781 3.219 22 H -0.201 1.201 23 H -0.202 1.202 24 H -0.205 1.205 25 C 0.012 3.988 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.229 0.771 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.447 -10.537 9.871 17.254 hybrid contribution 0.791 1.778 -0.901 2.145 sum -8.655 -8.759 8.970 15.234 Atomic orbital electron populations 1.21645 0.77073 1.04845 1.01852 1.57423 1.16271 1.21795 1.89364 1.21650 0.97021 0.85288 1.02024 1.01483 0.72398 0.72568 0.72975 1.93567 1.67082 1.59669 1.77107 1.93551 1.41733 1.85605 1.77423 1.57490 1.29785 1.64278 1.31300 1.21645 0.90269 0.94730 0.98471 1.21385 0.87777 0.94536 0.98836 1.21502 0.83781 0.86841 0.79636 1.90649 1.22562 1.66399 1.64376 1.48718 1.12071 1.26243 1.47305 1.22615 0.79731 0.97532 1.02511 1.23078 0.98833 0.94904 0.99749 1.19618 0.89495 0.91306 0.80254 1.86115 1.38917 1.84721 1.30354 1.21765 1.00103 0.93004 1.45090 0.93159 1.25533 0.95396 1.01825 0.93474 1.69747 1.06015 1.35632 1.42941 0.85558 0.77939 0.80610 0.77778 1.20082 1.20214 1.20547 1.21702 0.97949 0.86095 0.93085 0.91195 0.88768 0.92258 0.93647 0.88643 0.90994 0.90207 0.90900 0.90607 0.85514 0.83703 0.88130 0.90307 0.92588 0.90317 0.77113 0.91976 0.93830 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.72 10.30 127.77 1.32 3.03 16 2 N -1.01 -24.27 3.64 -562.70 -2.05 -26.32 16 3 C 0.09 2.07 10.62 127.77 1.36 3.43 16 4 S 2.80 73.61 6.07 -56.49 -0.34 73.27 16 5 O -0.99 -28.53 16.37 -128.00 -2.10 -30.62 16 6 O -1.00 -30.60 15.29 -128.00 -1.96 -32.56 16 7 N -0.99 -22.80 2.73 -543.20 -1.48 -24.28 16 8 C 0.09 1.71 10.30 127.77 1.32 3.03 16 9 C 0.10 2.38 5.15 85.63 0.44 2.82 16 10 C 0.49 15.43 7.91 87.66 0.69 16.13 16 11 O -0.56 -19.98 15.17 -3.03 -0.05 -20.02 16 12 N -0.61 -21.05 3.33 -811.76 -2.70 -23.75 16 13 C 0.10 3.01 6.68 86.86 0.58 3.59 16 14 C -0.13 -5.07 5.47 31.99 0.17 -4.89 16 15 C 0.23 10.72 0.85 -10.35 -0.01 10.72 16 16 O -0.59 -28.45 13.07 -148.98 -1.95 -30.40 16 17 C -0.56 -28.70 8.22 25.60 0.21 -28.49 16 18 H 0.05 2.63 7.58 -2.91 -0.02 2.61 16 19 C 0.04 1.95 5.28 84.66 0.45 2.40 16 20 N -0.90 -44.63 10.67 21.45 0.23 -44.40 16 21 Si 0.95 40.38 29.54 68.60 2.03 42.41 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 25 C 0.13 5.72 6.23 86.73 0.54 6.26 16 26 H 0.07 1.20 8.01 -2.39 -0.02 1.18 16 27 H 0.09 1.46 7.79 -2.39 -0.02 1.44 16 28 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 29 H 0.04 1.30 6.51 -2.39 -0.02 1.29 16 30 H 0.09 1.79 7.92 -2.39 -0.02 1.77 16 31 H 0.07 1.78 7.02 -2.39 -0.02 1.76 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.28 7.74 -2.39 -0.02 1.26 16 34 H 0.08 1.37 8.07 -2.39 -0.02 1.35 16 35 H 0.13 2.77 6.62 -2.39 -0.02 2.76 16 36 H 0.15 2.37 8.11 -2.38 -0.02 2.35 16 37 H 0.10 2.37 7.48 -2.39 -0.02 2.36 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 40 H 0.08 3.29 7.54 -2.39 -0.02 3.27 16 41 H 0.38 18.33 7.46 -74.06 -0.55 17.78 16 42 H 0.27 12.74 8.31 -92.71 -0.77 11.97 16 43 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 44 H 0.06 2.59 7.66 -2.39 -0.02 2.57 16 Total: -1.00 -64.20 368.50 -2.84 -67.03 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.46 Total: 31.63 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 7.07 Total: 18.02 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -6.00 Total: -118.75 kcal Atomic # 8 Polarization: -107.56 SS G_CDS: -6.05 Total: -113.61 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: 73.61 SS G_CDS: -0.34 Total: 73.27 kcal Total: -64.20 -2.84 -67.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771762710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.175 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds