Wall clock time and date at job start Tue Mar 31 2020 18:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46504 * 120.00059 * 2 1 4 4 S 1.65602 * 120.00229 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.39987 * 336.46265 * 4 2 1 6 6 O 1.42099 * 106.40538 * 203.54335 * 4 2 1 7 7 N 1.65606 * 107.21509 * 89.99970 * 4 2 1 8 8 C 1.46490 * 120.00122 * 269.99899 * 7 4 2 9 9 C 1.46498 * 119.99425 * 90.00476 * 7 4 2 10 10 C 1.50700 * 109.47127 * 95.00219 * 9 7 4 11 11 O 1.21283 * 120.00033 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99915 * 179.72083 * 10 9 7 13 13 C 1.47429 * 125.64757 * 359.96724 * 12 10 9 14 14 C 1.55124 * 104.71933 * 155.81842 * 13 12 10 15 15 C 1.55149 * 101.49039 * 37.29286 * 14 13 12 16 16 O 1.42902 * 110.72053 * 82.69490 * 15 14 13 17 17 C 1.50701 * 110.87506 * 205.89531 * 15 14 13 18 18 H 1.08004 * 119.99577 * 20.75503 * 17 15 14 19 19 C 1.37879 * 120.00342 * 200.75203 * 17 15 14 20 20 N 1.31517 * 119.99814 * 173.62821 * 19 17 15 21 21 Si 1.86793 * 119.99891 * 353.62631 * 19 17 15 22 22 H 1.48502 * 109.47154 * 86.33675 * 21 19 17 23 23 H 1.48503 * 109.47187 * 206.33621 * 21 19 17 24 24 H 1.48494 * 109.47300 * 326.33867 * 21 19 17 25 25 C 1.47018 * 125.64884 * 180.27406 * 12 10 9 26 26 H 1.09002 * 109.47290 * 270.00235 * 1 2 3 27 27 H 1.09001 * 109.47203 * 30.00103 * 1 2 3 28 28 H 1.09001 * 109.47144 * 150.00323 * 1 2 3 29 29 H 1.09000 * 109.47122 * 239.99752 * 3 2 1 30 30 H 1.08995 * 109.47230 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.47203 * 119.99999 * 3 2 1 32 32 H 1.08999 * 109.47920 * 270.00116 * 8 7 4 33 33 H 1.09007 * 109.46984 * 30.00487 * 8 7 4 34 34 H 1.09005 * 109.47433 * 149.99753 * 8 7 4 35 35 H 1.08998 * 109.47449 * 334.99888 * 9 7 4 36 36 H 1.09004 * 109.47017 * 214.99835 * 9 7 4 37 37 H 1.09001 * 110.36341 * 274.74624 * 13 12 10 38 38 H 1.09002 * 110.36796 * 37.06658 * 13 12 10 39 39 H 1.09002 * 111.19361 * 279.18335 * 14 13 12 40 40 H 1.09001 * 110.94041 * 155.28948 * 14 13 12 41 41 H 0.96702 * 114.00107 * 61.14451 * 16 15 14 42 42 H 0.97001 * 119.99833 * 179.97438 * 20 19 17 43 43 H 1.09009 * 109.88405 * 300.43930 * 25 12 10 44 44 H 1.08998 * 109.88515 * 61.60396 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4063 0.5455 6 8 3.5759 -1.1566 0.5450 7 7 2.5380 -1.8593 -1.5810 8 6 1.5478 -2.6817 -2.2803 9 6 3.7452 -1.4130 -2.2808 10 6 4.7974 -2.4891 -2.2037 11 8 4.5622 -3.5266 -1.6213 12 7 5.9980 -2.3007 -2.7865 13 6 6.4134 -1.0964 -3.5285 14 6 7.9621 -1.0940 -3.4406 15 6 8.2804 -2.6084 -3.5521 16 8 8.2927 -3.0230 -4.9196 17 6 9.5936 -2.9315 -2.8873 18 1 10.0046 -2.2595 -2.1484 19 6 10.2704 -4.0852 -3.2221 20 7 11.4729 -4.3063 -2.7374 21 14 9.4795 -5.3340 -4.3640 22 1 9.7606 -4.9630 -5.7742 23 1 10.0374 -6.6819 -4.0862 24 1 8.0117 -5.3500 -4.1396 25 6 7.1079 -3.2648 -2.7932 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.8241 1.3265 -0.8900 30 1 1.4892 2.0972 -0.0005 31 1 2.8241 1.3265 0.8900 32 1 1.7929 -3.7357 -2.1493 33 1 0.5573 -2.4853 -1.8698 34 1 1.5561 -2.4361 -3.3423 35 1 4.1211 -0.5032 -1.8128 36 1 3.5066 -1.2123 -3.3253 37 1 6.0901 -1.1606 -4.5675 38 1 6.0057 -0.2016 -3.0581 39 1 8.3021 -0.6926 -2.4859 40 1 8.3987 -0.5407 -4.2721 41 1 8.9594 -2.5772 -5.4599 42 1 11.9489 -5.1180 -2.9727 43 1 7.4088 -3.4907 -1.7701 44 1 6.8021 -4.1788 -3.3022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771762716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:58 Heat of formation + Delta-G solvation = -131.081441 kcal Electronic energy + Delta-G solvation = -28737.898785 eV Core-core repulsion = 24625.371790 eV Total energy + Delta-G solvation = -4112.526995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75917 -37.86008 -37.41027 -36.47376 -35.90851 -35.78800 -34.75007 -32.38412 -30.54664 -29.13035 -28.50807 -28.13975 -25.80436 -25.00076 -24.32736 -22.73560 -20.01519 -19.45340 -19.00944 -18.00024 -17.74258 -17.40304 -16.84577 -16.61363 -15.70659 -15.58995 -15.07260 -14.96022 -14.86174 -14.41080 -14.30558 -13.95242 -13.63633 -13.40830 -13.29087 -13.08841 -13.00051 -12.65959 -12.55345 -12.41852 -12.25470 -11.98641 -11.96942 -11.89972 -11.84426 -11.77429 -11.66885 -11.47612 -10.94400 -10.62418 -10.30316 -10.21543 -10.11219 -9.50754 -9.26572 -9.04325 -8.68018 -8.54398 -8.11030 -6.21410 -4.33921 0.31071 2.60131 2.91100 3.19696 3.43632 3.45835 3.55845 3.67295 4.09149 4.29185 4.46907 4.50536 4.69226 4.86604 4.92188 5.01332 5.04840 5.08030 5.15460 5.16391 5.19068 5.28355 5.36504 5.42033 5.48633 5.54422 5.65928 5.69499 5.75397 5.90979 5.98342 6.09434 6.33130 6.51675 6.58975 6.64594 6.76201 7.01913 7.45159 7.95395 8.11322 8.49985 8.62432 8.81269 9.39854 10.87549 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.003161 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.361659 B = 8857.011221 C = 9061.514134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.019 6.019 3 C 0.090 3.910 4 S 2.786 3.214 5 O -0.967 6.967 6 O -0.961 6.961 7 N -0.991 5.991 8 C 0.097 3.903 9 C 0.113 3.887 10 C 0.504 3.496 11 O -0.538 6.538 12 N -0.611 5.611 13 C 0.097 3.903 14 C -0.147 4.147 15 C 0.218 3.782 16 O -0.565 6.565 17 C -0.554 4.554 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.885 5.885 21 Si 0.939 3.061 22 H -0.288 1.288 23 H -0.321 1.321 24 H -0.267 1.267 25 C 0.113 3.887 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.373 0.627 42 H 0.267 0.733 43 H 0.083 0.917 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.964 14.348 -1.858 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.860 5.860 3 C -0.055 4.055 4 S 2.794 3.206 5 O -0.951 6.951 6 O -0.945 6.945 7 N -0.830 5.830 8 C -0.048 4.048 9 C -0.017 4.017 10 C 0.290 3.710 11 O -0.415 6.415 12 N -0.346 5.346 13 C -0.026 4.026 14 C -0.185 4.185 15 C 0.178 3.822 16 O -0.373 6.373 17 C -0.591 4.591 18 H 0.100 0.900 19 C -0.129 4.129 20 N -0.520 5.520 21 Si 0.773 3.227 22 H -0.215 1.215 23 H -0.252 1.252 24 H -0.193 1.193 25 C -0.008 4.008 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.221 0.779 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.244 12.821 -0.511 25.680 hybrid contribution 0.120 -0.041 -1.159 1.166 sum -22.124 12.780 -1.670 25.604 Atomic orbital electron populations 1.21513 0.78340 1.02949 1.02329 1.57968 1.15482 1.22629 1.89955 1.21550 0.96653 0.85111 1.02219 1.02146 0.73173 0.72586 0.72735 1.93601 1.67186 1.58254 1.76069 1.93639 1.39884 1.84924 1.76005 1.57505 1.27699 1.64930 1.32882 1.21498 0.89674 0.96082 0.97571 1.21122 0.84144 0.96321 1.00118 1.20634 0.82175 0.88985 0.79212 1.90686 1.79216 1.28450 1.43148 1.48726 1.13497 1.19320 1.53025 1.22441 0.97255 0.87000 0.95891 1.23404 0.92275 0.99948 1.02884 1.20068 0.93698 0.88802 0.79623 1.86151 1.61020 1.67419 1.22721 1.21198 1.02867 1.08979 1.26042 0.89991 1.25134 0.94246 0.97987 0.95582 1.69957 1.11698 1.26636 1.43691 0.85913 0.79656 0.77375 0.79785 1.21548 1.25159 1.19305 1.22734 0.84610 0.91981 1.01509 0.92322 0.90914 0.91219 0.92328 0.90154 0.91314 0.91552 0.91275 0.90976 0.87587 0.87411 0.91432 0.91635 0.90099 0.90458 0.77908 0.92319 0.89905 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.26 59.84 0.61 1.22 16 2 N -1.02 -9.19 3.64 -129.21 -0.47 -9.66 16 3 C 0.09 0.62 10.30 59.85 0.62 1.23 16 4 S 2.79 38.31 5.98 -107.50 -0.64 37.67 16 5 O -0.97 -15.65 16.28 -57.17 -0.93 -16.59 16 6 O -0.96 -16.60 16.27 -57.17 -0.93 -17.53 16 7 N -0.99 -12.25 2.73 -123.06 -0.34 -12.58 16 8 C 0.10 0.98 10.32 59.84 0.62 1.60 16 9 C 0.11 1.38 4.85 -5.19 -0.03 1.35 16 10 C 0.50 9.20 7.91 -10.98 -0.09 9.11 16 11 O -0.54 -12.07 16.75 5.55 0.09 -11.97 16 12 N -0.61 -11.34 3.32 -170.38 -0.57 -11.91 16 13 C 0.10 1.40 6.69 -2.41 -0.02 1.38 16 14 C -0.15 -2.49 6.26 -24.47 -0.15 -2.64 16 15 C 0.22 4.72 0.68 -89.94 -0.06 4.66 16 16 O -0.57 -11.70 8.88 -35.23 -0.31 -12.02 16 17 C -0.55 -14.58 8.71 -34.44 -0.30 -14.88 16 18 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 19 C 0.08 2.12 5.46 -17.82 -0.10 2.02 16 20 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 21 Si 0.94 23.43 24.90 -169.99 -4.23 19.19 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.32 -8.26 7.11 56.52 0.40 -7.86 16 24 H -0.27 -6.73 5.18 56.52 0.29 -6.44 16 25 C 0.11 2.55 5.64 -3.07 -0.02 2.53 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.28 7.92 -51.93 -0.41 -0.14 16 28 H 0.07 0.42 7.37 -51.93 -0.38 0.04 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.33 7.79 -51.93 -0.40 -0.07 16 31 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.54 7.37 -51.93 -0.38 0.16 16 34 H 0.07 0.54 7.94 -51.93 -0.41 0.12 16 35 H 0.11 1.09 7.33 -51.93 -0.38 0.71 16 36 H 0.11 0.92 7.96 -51.93 -0.41 0.51 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.72 7.49 -51.93 -0.39 0.33 16 39 H 0.08 1.43 7.99 -51.93 -0.41 1.01 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.37 6.58 9.07 45.56 0.41 7.00 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 2.04 7.82 -51.92 -0.41 1.63 16 44 H 0.07 1.63 6.30 -51.93 -0.33 1.30 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -38.35 366.53 -7.04 -45.39 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.10 Total: 2.40 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 1.09 Total: 7.58 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.60 Total: -59.65 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -2.08 Total: -58.10 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.23 Total: 19.19 kcal Atomic # 16 Polarization: 38.31 SS G_CDS: -0.64 Total: 37.67 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.35 -7.04 -45.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771762716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.688 kcal (2) G-P(sol) polarization free energy of solvation -38.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds