Wall clock time and date at job start Tue Mar 31 2020 18:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46504 * 120.00059 * 2 1 4 4 S 1.65602 * 120.00229 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.39987 * 336.46265 * 4 2 1 6 6 O 1.42099 * 106.40538 * 203.54335 * 4 2 1 7 7 N 1.65606 * 107.21509 * 89.99970 * 4 2 1 8 8 C 1.46490 * 120.00122 * 269.99899 * 7 4 2 9 9 C 1.46498 * 119.99425 * 90.00476 * 7 4 2 10 10 C 1.50700 * 109.47127 * 95.00219 * 9 7 4 11 11 O 1.21283 * 120.00033 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99915 * 179.72083 * 10 9 7 13 13 C 1.47429 * 125.64757 * 359.96724 * 12 10 9 14 14 C 1.55124 * 104.71933 * 155.81842 * 13 12 10 15 15 C 1.55149 * 101.49039 * 37.29286 * 14 13 12 16 16 O 1.42902 * 110.72053 * 82.69490 * 15 14 13 17 17 C 1.50701 * 110.87506 * 205.89531 * 15 14 13 18 18 H 1.08004 * 119.99577 * 20.75503 * 17 15 14 19 19 C 1.37879 * 120.00342 * 200.75203 * 17 15 14 20 20 N 1.31517 * 119.99814 * 173.62821 * 19 17 15 21 21 Si 1.86793 * 119.99891 * 353.62631 * 19 17 15 22 22 H 1.48502 * 109.47154 * 86.33675 * 21 19 17 23 23 H 1.48503 * 109.47187 * 206.33621 * 21 19 17 24 24 H 1.48494 * 109.47300 * 326.33867 * 21 19 17 25 25 C 1.47018 * 125.64884 * 180.27406 * 12 10 9 26 26 H 1.09002 * 109.47290 * 270.00235 * 1 2 3 27 27 H 1.09001 * 109.47203 * 30.00103 * 1 2 3 28 28 H 1.09001 * 109.47144 * 150.00323 * 1 2 3 29 29 H 1.09000 * 109.47122 * 239.99752 * 3 2 1 30 30 H 1.08995 * 109.47230 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.47203 * 119.99999 * 3 2 1 32 32 H 1.08999 * 109.47920 * 270.00116 * 8 7 4 33 33 H 1.09007 * 109.46984 * 30.00487 * 8 7 4 34 34 H 1.09005 * 109.47433 * 149.99753 * 8 7 4 35 35 H 1.08998 * 109.47449 * 334.99888 * 9 7 4 36 36 H 1.09004 * 109.47017 * 214.99835 * 9 7 4 37 37 H 1.09001 * 110.36341 * 274.74624 * 13 12 10 38 38 H 1.09002 * 110.36796 * 37.06658 * 13 12 10 39 39 H 1.09002 * 111.19361 * 279.18335 * 14 13 12 40 40 H 1.09001 * 110.94041 * 155.28948 * 14 13 12 41 41 H 0.96702 * 114.00107 * 61.14451 * 16 15 14 42 42 H 0.97001 * 119.99833 * 179.97438 * 20 19 17 43 43 H 1.09009 * 109.88405 * 300.43930 * 25 12 10 44 44 H 1.08998 * 109.88515 * 61.60396 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4063 0.5455 6 8 3.5759 -1.1566 0.5450 7 7 2.5380 -1.8593 -1.5810 8 6 1.5478 -2.6817 -2.2803 9 6 3.7452 -1.4130 -2.2808 10 6 4.7974 -2.4891 -2.2037 11 8 4.5622 -3.5266 -1.6213 12 7 5.9980 -2.3007 -2.7865 13 6 6.4134 -1.0964 -3.5285 14 6 7.9621 -1.0940 -3.4406 15 6 8.2804 -2.6084 -3.5521 16 8 8.2927 -3.0230 -4.9196 17 6 9.5936 -2.9315 -2.8873 18 1 10.0046 -2.2595 -2.1484 19 6 10.2704 -4.0852 -3.2221 20 7 11.4729 -4.3063 -2.7374 21 14 9.4795 -5.3340 -4.3640 22 1 9.7606 -4.9630 -5.7742 23 1 10.0374 -6.6819 -4.0862 24 1 8.0117 -5.3500 -4.1396 25 6 7.1079 -3.2648 -2.7932 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.8241 1.3265 -0.8900 30 1 1.4892 2.0972 -0.0005 31 1 2.8241 1.3265 0.8900 32 1 1.7929 -3.7357 -2.1493 33 1 0.5573 -2.4853 -1.8698 34 1 1.5561 -2.4361 -3.3423 35 1 4.1211 -0.5032 -1.8128 36 1 3.5066 -1.2123 -3.3253 37 1 6.0901 -1.1606 -4.5675 38 1 6.0057 -0.2016 -3.0581 39 1 8.3021 -0.6926 -2.4859 40 1 8.3987 -0.5407 -4.2721 41 1 8.9594 -2.5772 -5.4599 42 1 11.9489 -5.1180 -2.9727 43 1 7.4088 -3.4907 -1.7701 44 1 6.8021 -4.1788 -3.3022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771762716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:57 Heat of formation + Delta-G solvation = -166.065748 kcal Electronic energy + Delta-G solvation = -28739.415818 eV Core-core repulsion = 24625.371790 eV Total energy + Delta-G solvation = -4114.044029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19050 -39.36817 -38.55583 -37.16676 -36.99096 -36.85131 -36.31189 -34.48841 -32.03892 -30.40551 -29.60113 -28.92499 -27.17508 -25.98744 -25.40586 -24.10320 -21.61318 -20.78954 -20.03799 -19.38812 -18.89563 -18.79877 -18.10113 -17.60442 -17.24226 -16.81947 -16.60810 -16.29855 -15.82585 -15.62348 -15.40514 -15.13173 -14.96923 -14.59338 -14.32465 -14.23281 -14.18959 -13.89479 -13.66928 -13.58061 -13.47888 -13.44747 -13.33337 -13.23136 -12.80939 -12.72358 -12.61113 -12.58238 -12.42381 -12.33695 -12.10313 -12.04023 -11.38211 -11.25386 -10.72343 -10.37791 -10.18972 -10.05823 -9.62622 -8.39623 -6.52280 -0.66488 1.41375 1.46934 1.56666 1.65303 1.72609 2.01378 2.37383 2.43946 2.94109 3.11279 3.41116 3.52215 3.64143 3.83241 3.88347 4.12406 4.26411 4.32168 4.34497 4.44177 4.51315 4.55358 4.60290 4.68580 4.73131 4.77108 4.89048 4.95163 4.97575 4.98046 5.00093 5.05146 5.15309 5.25198 5.29282 5.38063 5.52675 5.62524 6.04301 6.56019 6.60020 7.02528 7.11668 7.28465 8.73619 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.003161 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.361659 B = 8857.011221 C = 9061.514134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.007 6.007 3 C 0.078 3.922 4 S 2.790 3.210 5 O -1.005 7.005 6 O -1.007 7.007 7 N -0.992 5.992 8 C 0.090 3.910 9 C 0.118 3.882 10 C 0.490 3.510 11 O -0.595 6.595 12 N -0.615 5.615 13 C 0.099 3.901 14 C -0.140 4.140 15 C 0.217 3.783 16 O -0.564 6.564 17 C -0.549 4.549 18 H 0.047 0.953 19 C 0.027 3.973 20 N -0.933 5.933 21 Si 0.994 3.006 22 H -0.264 1.264 23 H -0.336 1.336 24 H -0.275 1.275 25 C 0.118 3.882 26 H 0.056 0.944 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.161 0.839 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.389 0.611 42 H 0.267 0.733 43 H 0.042 0.958 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.889 17.781 -4.652 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.851 5.851 3 C -0.066 4.066 4 S 2.799 3.201 5 O -0.988 6.988 6 O -0.990 6.990 7 N -0.831 5.831 8 C -0.055 4.055 9 C -0.011 4.011 10 C 0.279 3.721 11 O -0.476 6.476 12 N -0.349 5.349 13 C -0.022 4.022 14 C -0.178 4.178 15 C 0.176 3.824 16 O -0.374 6.374 17 C -0.586 4.586 18 H 0.066 0.934 19 C -0.173 4.173 20 N -0.571 5.571 21 Si 0.827 3.173 22 H -0.190 1.190 23 H -0.268 1.268 24 H -0.201 1.201 25 C -0.006 4.006 26 H 0.075 0.925 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.150 0.850 36 H 0.179 0.821 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.239 0.761 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.181 16.309 -3.337 30.186 hybrid contribution 0.998 -1.047 -0.208 1.461 sum -24.183 15.262 -3.545 28.815 Atomic orbital electron populations 1.21815 0.76483 1.04882 1.02929 1.57590 1.16427 1.21557 1.89575 1.21852 0.97593 0.84731 1.02430 1.01665 0.72244 0.73158 0.73070 1.93541 1.67715 1.60349 1.77229 1.93573 1.42368 1.85698 1.77361 1.57437 1.28055 1.65314 1.32303 1.21700 0.90038 0.94014 0.99701 1.21406 0.81994 0.94226 1.03439 1.21993 0.82794 0.89768 0.77577 1.90663 1.80290 1.31263 1.45352 1.48838 1.12741 1.19722 1.53604 1.22767 0.94918 0.86825 0.97670 1.23326 0.94943 0.95915 1.03642 1.19852 0.90629 0.92361 0.79533 1.86082 1.61478 1.67994 1.21843 1.21532 1.04624 1.07648 1.24836 0.93429 1.25845 0.94513 0.99729 0.97238 1.70072 1.13386 1.27475 1.46181 0.85002 0.78044 0.74802 0.79426 1.18956 1.26775 1.20080 1.22238 0.86806 0.92596 0.98975 0.92545 0.87272 0.90991 0.90520 0.86792 0.92915 0.94899 0.89186 0.87397 0.85014 0.82136 0.88339 0.86856 0.91409 0.87194 0.76112 0.92387 0.93981 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.26 127.77 1.31 2.11 16 2 N -1.01 -15.32 3.64 -562.70 -2.05 -17.37 16 3 C 0.08 0.79 10.30 127.77 1.32 2.10 16 4 S 2.79 74.01 5.98 -56.49 -0.34 73.67 16 5 O -1.00 -32.82 16.28 -128.00 -2.08 -34.90 16 6 O -1.01 -34.78 16.27 -128.00 -2.08 -36.87 16 7 N -0.99 -22.11 2.73 -543.24 -1.48 -23.59 16 8 C 0.09 1.61 10.32 127.77 1.32 2.93 16 9 C 0.12 2.42 4.85 85.63 0.42 2.83 16 10 C 0.49 17.20 7.91 87.66 0.69 17.90 16 11 O -0.59 -27.42 16.75 -3.04 -0.05 -27.47 16 12 N -0.62 -21.73 3.32 -811.35 -2.70 -24.43 16 13 C 0.10 2.36 6.69 86.93 0.58 2.95 16 14 C -0.14 -4.33 6.26 32.06 0.20 -4.13 16 15 C 0.22 9.21 0.68 -10.35 -0.01 9.20 16 16 O -0.56 -22.01 8.88 -148.98 -1.32 -23.34 16 17 C -0.55 -29.65 8.71 25.60 0.22 -29.43 16 18 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 19 C 0.03 1.55 5.46 84.65 0.46 2.01 16 20 N -0.93 -57.48 13.96 21.45 0.30 -57.18 16 21 Si 0.99 49.21 24.90 68.60 1.71 50.92 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.34 -17.31 7.11 99.48 0.71 -16.60 16 24 H -0.27 -13.83 5.18 99.48 0.52 -13.31 16 25 C 0.12 5.38 5.64 86.73 0.49 5.86 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.11 0.29 7.92 -2.39 -0.02 0.27 16 28 H 0.07 0.67 7.37 -2.39 -0.02 0.65 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.40 7.79 -2.39 -0.02 0.38 16 31 H 0.05 0.71 8.01 -2.39 -0.02 0.69 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.19 7.37 -2.38 -0.02 1.18 16 34 H 0.11 1.13 7.94 -2.38 -0.02 1.11 16 35 H 0.13 2.05 7.33 -2.39 -0.02 2.03 16 36 H 0.16 1.64 7.96 -2.38 -0.02 1.62 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.71 7.49 -2.39 -0.02 1.70 16 39 H 0.07 2.28 7.99 -2.39 -0.02 2.26 16 40 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.39 12.46 9.07 -74.06 -0.67 11.78 16 42 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.04 2.21 7.82 -2.38 -0.02 2.19 16 44 H 0.04 2.09 6.30 -2.39 -0.02 2.07 16 Total: -1.00 -92.44 366.53 -2.95 -95.39 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.15 Total: 10.83 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 7.00 Total: 14.34 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -5.93 Total: -122.58 kcal Atomic # 8 Polarization: -117.04 SS G_CDS: -5.54 Total: -122.58 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.71 Total: 50.92 kcal Atomic # 16 Polarization: 74.01 SS G_CDS: -0.34 Total: 73.67 kcal Total: -92.44 -2.95 -95.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771762716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.674 kcal (2) G-P(sol) polarization free energy of solvation -92.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds