Wall clock time and date at job start Tue Mar 31 2020 18:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47042 * 275.58253 * 3 2 1 5 5 H 1.48494 * 109.47165 * 35.58266 * 3 2 1 6 6 H 1.48497 * 109.47215 * 155.58390 * 3 2 1 7 7 C 1.38816 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00171 * 335.91428 * 7 2 1 9 9 N 1.36939 * 119.99784 * 155.92032 * 7 2 1 10 10 C 1.46925 * 120.63160 * 157.66412 * 9 7 2 11 11 C 1.53197 * 108.77426 * 126.41093 * 10 9 7 12 12 C 1.53039 * 109.31185 * 54.63418 * 11 10 9 13 13 H 1.09005 * 109.46003 * 178.62719 * 12 11 10 14 14 N 1.46500 * 109.46040 * 58.65703 * 12 11 10 15 15 C 1.34784 * 120.00373 * 84.96568 * 14 12 11 16 16 O 1.21490 * 119.99266 * 0.02562 * 15 14 12 17 17 C 1.48303 * 120.00195 * 179.97438 * 15 14 12 18 18 N 1.32890 * 120.14352 * 4.87128 * 17 15 14 19 19 C 1.31842 * 119.99668 * 180.02562 * 18 17 15 20 20 C 1.39000 * 120.28755 * 0.02562 * 19 18 17 21 21 N 1.31835 * 120.29347 * 359.68073 * 20 19 18 22 22 C 1.32892 * 119.99784 * 0.59392 * 21 20 19 23 23 C 1.48302 * 120.14933 * 179.69622 * 22 21 20 24 24 N 1.34771 * 120.00125 * 284.00368 * 23 22 21 25 25 O 1.21497 * 119.99814 * 103.71813 * 23 22 21 26 26 C 1.53042 * 109.52975 * 298.64234 * 12 11 10 27 27 H 1.08992 * 109.49626 * 301.40789 * 26 12 11 28 28 O 1.42901 * 109.49366 * 181.30769 * 26 12 11 29 29 C 1.46925 * 120.62863 * 337.68535 * 9 7 2 30 30 H 0.97000 * 120.00234 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58352 * 6.62820 * 10 9 7 32 32 H 1.08993 * 109.58992 * 246.19721 * 10 9 7 33 33 H 1.08999 * 109.49585 * 294.68566 * 11 10 9 34 34 H 1.08996 * 109.49455 * 174.58979 * 11 10 9 35 35 H 0.97000 * 120.00085 * 264.97318 * 14 12 11 36 36 H 1.07999 * 119.85458 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.85079 * 179.97438 * 20 19 18 38 38 H 0.97003 * 120.00238 * 179.71930 * 24 23 22 39 39 H 0.97002 * 120.00348 * 359.71712 * 24 23 22 40 40 H 0.96708 * 113.99519 * 179.97438 * 28 26 12 41 41 H 1.09003 * 109.59298 * 353.37615 * 29 9 7 42 42 H 1.09003 * 109.58908 * 113.65825 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3797 2.1145 -1.3935 5 1 1.5116 2.6157 0.8146 6 1 3.6017 1.4090 0.5787 7 6 2.0102 -1.2022 -0.0005 8 1 1.5407 -2.0969 0.3807 9 7 3.2902 -1.2536 -0.4844 10 6 4.2038 -2.3279 -0.0723 11 6 4.7639 -3.0070 -1.3261 12 6 5.4029 -1.9511 -2.2309 13 1 5.8238 -2.4348 -3.1124 14 7 6.4671 -1.2601 -1.4986 15 6 7.7068 -1.7872 -1.4545 16 8 7.9418 -2.8351 -2.0226 17 6 8.7842 -1.0874 -0.7136 18 7 8.5094 0.0074 -0.0122 19 6 9.4695 0.6275 0.6450 20 6 10.7713 0.1416 0.6079 21 7 11.0556 -0.9467 -0.0796 22 6 10.0978 -1.5778 -0.7507 23 6 10.4152 -2.7986 -1.5306 24 7 11.0473 -2.6953 -2.7164 25 8 10.1100 -3.8922 -1.0981 26 6 4.3409 -0.9377 -2.6637 27 1 3.5367 -1.4546 -3.1871 28 8 4.9317 0.0305 -3.5330 29 6 3.7762 -0.2351 -1.4253 30 1 -0.4850 0.8400 0.0004 31 1 3.6614 -3.0586 0.5277 32 1 5.0222 -1.9075 0.5120 33 1 3.9556 -3.5044 -1.8621 34 1 5.5155 -3.7415 -1.0370 35 1 6.2795 -0.4233 -1.0452 36 1 9.2435 1.5168 1.2146 37 1 11.5524 0.6554 1.1485 38 1 11.2585 -3.4941 -3.2247 39 1 11.2910 -1.8223 -3.0617 40 1 4.3145 0.7054 -3.8473 41 1 2.9518 0.4151 -1.7182 42 1 4.5580 0.3577 -0.9505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090795310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:52 Heat of formation + Delta-G solvation = -29.746376 kcal Electronic energy + Delta-G solvation = -29993.654142 eV Core-core repulsion = 25782.370165 eV Total energy + Delta-G solvation = -4211.283977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.84236 -39.89910 -39.14188 -38.08238 -35.57126 -35.01315 -34.26061 -33.78110 -32.33864 -31.87274 -30.30827 -29.24665 -26.19242 -25.90339 -25.14250 -23.06280 -21.96417 -21.61348 -21.37604 -19.08721 -18.63359 -18.41815 -18.04297 -17.14009 -17.03129 -16.87135 -16.06799 -15.78705 -15.56453 -15.21777 -14.99649 -14.57973 -14.29124 -14.21356 -14.11185 -13.85017 -13.59637 -13.46674 -12.99371 -12.61616 -12.30740 -12.20540 -11.88128 -11.76585 -11.61071 -11.12702 -11.03503 -10.72332 -10.54513 -10.35520 -10.25822 -9.92914 -9.85473 -9.84022 -9.73702 -9.49625 -9.49043 -8.89460 -8.70012 -7.16419 -6.04765 -3.36668 -0.13771 0.46047 2.33836 2.53917 2.81142 3.00153 3.19047 3.35371 3.40705 3.41846 3.60136 3.91641 4.02697 4.27693 4.41914 4.45187 4.62567 4.79105 4.82216 4.84160 5.13092 5.22931 5.43519 5.53070 5.64592 5.66499 5.73850 5.95236 6.14011 6.27531 6.31251 6.42541 6.52110 6.56118 6.58121 6.60487 6.78671 7.02610 7.06699 7.56052 7.72083 7.88759 8.02270 8.15249 8.21397 8.81207 9.60755 9.94843 11.10576 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.003806 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.825934 B = 7354.253438 C = 8046.324377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.877 3.123 4 H -0.291 1.291 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.091 0.909 9 N -0.599 5.599 10 C 0.148 3.852 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.089 0.911 14 N -0.681 5.681 15 C 0.564 3.436 16 O -0.512 6.512 17 C 0.075 3.925 18 N -0.406 5.406 19 C 0.068 3.932 20 C 0.071 3.929 21 N -0.413 5.413 22 C 0.088 3.912 23 C 0.602 3.398 24 N -0.838 5.838 25 O -0.502 6.502 26 C 0.077 3.923 27 H 0.077 0.923 28 O -0.571 6.571 29 C 0.098 3.902 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.185 0.815 37 H 0.185 0.815 38 H 0.410 0.590 39 H 0.400 0.600 40 H 0.378 0.622 41 H 0.079 0.921 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.706 3.064 -4.063 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.708 3.292 4 H -0.220 1.220 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.109 0.891 9 N -0.324 5.324 10 C 0.022 3.978 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.107 0.893 14 N -0.332 5.332 15 C 0.345 3.655 16 O -0.387 6.387 17 C -0.067 4.067 18 N -0.123 5.123 19 C -0.094 4.094 20 C -0.091 4.091 21 N -0.129 5.129 22 C -0.055 4.055 23 C 0.382 3.618 24 N -0.402 5.402 25 O -0.374 6.374 26 C 0.016 3.984 27 H 0.094 0.906 28 O -0.376 6.376 29 C -0.029 4.029 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.249 0.751 36 H 0.202 0.798 37 H 0.202 0.798 38 H 0.242 0.758 39 H 0.228 0.772 40 H 0.225 0.775 41 H 0.096 0.904 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 21.883 1.305 -3.937 22.272 hybrid contribution -0.033 2.202 -0.001 2.202 sum 21.850 3.507 -3.939 22.477 Atomic orbital electron populations 1.69874 1.05691 1.26610 1.52285 1.25177 0.95190 0.97443 0.99912 0.87064 0.80396 0.85058 0.76700 1.21957 1.23032 1.19464 1.18966 0.86571 0.95544 1.37839 0.89147 1.44310 1.11534 1.27986 1.48602 1.20943 0.92570 0.90780 0.93494 1.22427 1.00383 0.97277 0.98596 1.20975 0.86110 0.92315 0.94697 0.89311 1.45827 1.08231 1.26706 1.52468 1.17593 0.82291 0.84635 0.80935 1.90859 1.81474 1.21445 1.44957 1.22328 0.93642 0.93405 0.97281 1.68520 1.35219 1.05006 1.03542 1.24172 0.89641 0.99898 0.95729 1.24168 0.97728 0.92056 0.95189 1.68573 1.33428 1.06271 1.04645 1.22054 0.90487 0.95864 0.97121 1.17150 0.76693 0.86678 0.81267 1.43471 1.61934 1.12897 1.21915 1.90866 1.50785 1.26310 1.69417 1.22755 0.94115 0.89972 0.91581 0.90550 1.86431 1.41229 1.43025 1.66902 1.21993 0.98077 0.92711 0.90074 0.92695 0.91327 0.95719 0.90253 0.90993 0.75055 0.79788 0.79785 0.75797 0.77218 0.77503 0.90360 0.95092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.97 55.49 0.78 -25.94 16 2 C 0.02 0.60 5.22 -17.43 -0.09 0.51 16 3 Si 0.88 21.20 24.35 -169.99 -4.14 17.06 16 4 H -0.29 -6.67 6.65 56.52 0.38 -6.29 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.26 -7.00 10.06 -15.06 -0.15 -7.15 16 8 H 0.09 2.59 8.02 -52.49 -0.42 2.17 16 9 N -0.60 -13.51 2.83 -172.33 -0.49 -14.00 16 10 C 0.15 2.88 6.26 -3.71 -0.02 2.86 16 11 C -0.15 -2.52 5.77 -26.61 -0.15 -2.67 16 12 C 0.16 2.75 2.47 -67.89 -0.17 2.58 16 13 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 14 N -0.68 -11.20 4.14 -54.56 -0.23 -11.43 16 15 C 0.56 9.34 7.75 -12.12 -0.09 9.25 16 16 O -0.51 -9.49 13.36 -15.07 -0.20 -9.69 16 17 C 0.08 1.08 6.78 -82.51 -0.56 0.52 16 18 N -0.41 -5.09 9.72 -9.31 -0.09 -5.18 16 19 C 0.07 0.56 11.23 -17.26 -0.19 0.37 16 20 C 0.07 0.53 11.23 -17.27 -0.19 0.33 16 21 N -0.41 -4.49 10.44 -9.32 -0.10 -4.59 16 22 C 0.09 1.17 6.55 -82.51 -0.54 0.63 16 23 C 0.60 8.62 5.65 -12.12 -0.07 8.55 16 24 N -0.84 -8.07 8.87 30.63 0.27 -7.79 16 25 O -0.50 -9.26 16.92 -15.07 -0.26 -9.51 16 26 C 0.08 1.32 3.36 -26.62 -0.09 1.23 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 O -0.57 -8.84 13.21 -35.23 -0.47 -9.30 16 29 C 0.10 1.99 3.54 -3.72 -0.01 1.98 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 32 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.41 6.87 6.24 -40.82 -0.25 6.61 16 36 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.19 0.54 8.06 -52.49 -0.42 0.11 16 38 H 0.41 3.30 8.93 -40.82 -0.36 2.94 16 39 H 0.40 2.76 8.82 -40.82 -0.36 2.40 16 40 H 0.38 4.57 9.08 45.56 0.41 4.99 16 41 H 0.08 1.73 4.12 -51.93 -0.21 1.51 16 42 H 0.03 0.63 5.65 -51.93 -0.29 0.34 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -36.31 346.92 -6.03 -42.35 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -4.01 Total: 13.80 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: -2.34 Total: 18.99 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: 0.15 Total: -68.93 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.92 Total: -28.50 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.14 Total: 17.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.31 -6.03 -42.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090795310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.601 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds