Wall clock time and date at job start Tue Mar 31 2020 18:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47458 * 242.67776 * 3 2 1 5 5 C 1.46897 * 110.99826 * 293.95854 * 4 3 2 6 6 C 1.47199 * 109.47431 * 66.04265 * 5 4 3 7 7 N 2.88938 * 70.21115 * 211.44797 * 2 1 3 8 8 C 1.46900 * 111.00103 * 169.99888 * 4 3 2 9 9 C 1.50704 * 109.46772 * 190.00238 * 8 4 3 10 10 O 1.21395 * 119.99915 * 0.02562 * 9 8 4 11 11 C 1.41725 * 119.99748 * 180.02562 * 9 8 4 12 12 C 1.37863 * 126.91277 * 359.96992 * 11 9 8 13 13 N 1.34667 * 109.62260 * 180.02562 * 12 11 9 14 14 C 1.46500 * 124.64714 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47182 * 265.00076 * 14 13 12 16 16 H 1.07998 * 119.99757 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00020 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99938 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00235 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46867 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47110 * 119.99502 * 19 17 15 22 22 H 1.48493 * 109.47180 * 239.99539 * 19 17 15 23 23 C 1.38023 * 110.70743 * 359.97438 * 13 12 11 24 24 C 1.39142 * 133.03672 * 180.02562 * 23 13 12 25 25 C 1.37777 * 119.94254 * 180.02562 * 24 23 13 26 26 C 1.38718 * 120.64123 * 0.02562 * 25 24 23 27 27 C 1.37805 * 120.26774 * 359.97438 * 26 25 24 28 28 C 1.39191 * 119.66997 * 359.97438 * 27 26 25 29 29 H 4.40892 * 5.52188 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.46975 * 122.67968 * 3 2 1 31 31 H 1.09005 * 109.47426 * 2.67760 * 3 2 1 32 32 H 1.09002 * 109.46943 * 186.04283 * 5 4 3 33 33 H 1.09005 * 109.46807 * 306.04179 * 5 4 3 34 34 H 1.08999 * 109.47010 * 70.00055 * 8 4 3 35 35 H 1.08995 * 109.47143 * 310.00030 * 8 4 3 36 36 H 1.08002 * 125.19167 * 359.97438 * 12 11 9 37 37 H 1.09003 * 109.46920 * 24.99790 * 14 13 12 38 38 H 1.09005 * 109.47102 * 144.99414 * 14 13 12 39 39 H 0.97000 * 120.00038 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.02772 * 0.02562 * 24 23 13 41 41 H 1.08002 * 119.67742 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.86836 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.16366 * 179.70266 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1354 0.6366 1.2305 5 6 2.7852 2.0629 1.2611 6 6 1.3231 2.2074 1.3499 7 7 0.1958 2.3194 1.4184 8 6 4.5844 0.4468 1.3808 9 6 5.0090 0.8907 2.7569 10 8 4.1849 1.3227 3.5366 11 6 6.3705 0.8040 3.1407 12 6 7.4186 0.3388 2.3752 13 7 8.5620 0.4101 3.0830 14 6 9.8771 0.0002 2.5843 15 6 10.1571 -1.4175 3.0119 16 1 9.4284 -1.9588 3.5971 17 6 11.3438 -2.0230 2.6571 18 7 12.2314 -1.3635 1.9450 19 14 11.6912 -3.7800 3.1877 20 1 10.5422 -4.2957 3.9746 21 1 11.8901 -4.6298 1.9863 22 1 12.9175 -3.8111 4.0246 23 6 8.3254 0.9232 4.3423 24 6 9.1518 1.1913 5.4292 25 6 8.6180 1.7158 6.5860 26 6 7.2597 1.9808 6.6811 27 6 6.4252 1.7221 5.6155 28 6 6.9518 1.1932 4.4406 29 1 -1.0501 0.0001 -0.0002 30 1 3.0090 0.5557 -0.8650 31 1 3.0098 -1.0257 -0.0480 32 1 3.2501 2.5326 2.1280 33 1 3.1434 2.5445 0.3512 34 1 5.1081 1.0388 0.6302 35 1 4.8285 -0.6071 1.2475 36 1 7.3352 -0.0276 1.3627 37 1 9.8879 0.0602 1.4960 38 1 10.6424 0.6607 2.9922 39 1 13.0661 -1.7896 1.6950 40 1 10.2106 0.9883 5.3660 41 1 9.2633 1.9218 7.4272 42 1 6.8545 2.3916 7.5941 43 1 5.3672 1.9246 5.6930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281209376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:25 Heat of formation + Delta-G solvation = 124.240716 kcal Electronic energy + Delta-G solvation = -27117.629556 eV Core-core repulsion = 23323.872223 eV Total energy + Delta-G solvation = -3793.757333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09751 -39.45321 -37.59755 -36.71690 -35.80174 -33.68546 -33.10936 -32.01668 -29.96772 -29.75189 -28.65742 -28.06200 -27.06956 -24.32905 -23.29158 -22.53608 -21.42469 -20.46326 -18.94069 -18.19690 -18.01628 -17.00419 -16.70434 -16.31773 -15.96238 -15.47801 -15.19148 -14.96402 -14.79246 -14.61782 -14.11226 -13.92257 -13.73921 -13.65834 -13.36919 -13.17794 -13.15997 -12.73599 -12.57820 -12.48829 -12.17516 -11.96541 -11.84903 -11.60708 -11.47861 -11.25152 -11.00308 -10.93973 -10.64191 -10.50244 -10.32521 -10.14676 -9.83147 -9.36968 -9.08761 -8.85364 -8.68670 -7.82292 -7.22537 -6.46403 -4.57200 1.26001 1.89876 2.18293 2.28509 2.64366 2.85505 3.06028 3.07276 3.16790 3.20742 3.45454 3.58691 3.68244 4.02862 4.12906 4.24732 4.37682 4.44817 4.87640 4.89317 5.00824 5.04730 5.15450 5.19388 5.25537 5.28595 5.38569 5.43794 5.49061 5.65017 5.80448 5.90206 6.00956 6.09544 6.22069 6.44052 6.46835 6.51093 6.64238 6.71829 6.87032 6.99856 7.11570 7.27792 7.44957 7.48448 7.59678 7.61940 7.70567 7.75995 8.10169 8.50521 9.12379 10.60052 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.003001 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.270280 B = 9328.820416 C =11106.435734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.199 4.199 3 C 0.160 3.840 4 N -0.520 5.520 5 C 0.141 3.859 6 C 0.223 3.777 7 N -0.432 5.432 8 C 0.011 3.989 9 C 0.431 3.569 10 O -0.470 6.470 11 C -0.314 4.314 12 C 0.156 3.844 13 N -0.422 5.422 14 C 0.226 3.774 15 C -0.547 4.547 16 H 0.068 0.932 17 C 0.069 3.931 18 N -0.888 5.888 19 Si 0.905 3.095 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.084 3.916 24 C -0.100 4.100 25 C -0.122 4.122 26 C -0.142 4.142 27 C -0.083 4.083 28 C -0.056 4.056 29 H 0.213 0.787 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.175 0.825 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.269 0.731 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 5.090 -3.283 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.199 4.199 3 C 0.034 3.966 4 N -0.244 5.244 5 C 0.011 3.989 6 C -0.095 4.095 7 N -0.110 5.110 8 C -0.117 4.117 9 C 0.313 3.687 10 O -0.349 6.349 11 C -0.323 4.323 12 C 0.013 3.987 13 N -0.095 5.095 14 C 0.108 3.892 15 C -0.585 4.585 16 H 0.086 0.914 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.021 4.021 24 C -0.120 4.120 25 C -0.141 4.141 26 C -0.161 4.161 27 C -0.102 4.102 28 C -0.059 4.059 29 H 0.230 0.770 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.192 0.808 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.718 5.149 -2.558 13.053 hybrid contribution 1.218 -0.898 -0.602 1.628 sum -10.501 4.251 -3.160 11.761 Atomic orbital electron populations 1.24861 0.95852 0.99501 0.99048 1.22698 0.94208 1.01628 1.01394 1.19138 0.85300 1.01324 0.90810 1.61547 1.14195 1.12080 1.36621 1.19760 0.83870 0.90341 1.04941 1.28618 0.94870 0.93174 0.92864 1.81050 1.12680 1.08070 1.09213 1.22574 0.86113 1.04526 0.98447 1.19695 0.86724 0.74959 0.87366 1.90487 1.54010 1.37516 1.52890 1.19502 0.94261 1.21996 0.96532 1.22551 0.84725 0.94305 0.97113 1.44624 1.09840 1.45111 1.09924 1.19962 0.75831 0.97003 0.96389 1.21326 1.03902 0.97078 1.36189 0.91398 1.24935 0.95377 0.98911 0.94324 1.69918 1.08614 1.37567 1.36390 0.86310 0.78650 0.83212 0.78670 1.19379 1.20525 1.20536 1.18319 0.94326 1.02056 0.87403 1.20208 0.99432 1.01019 0.91343 1.20714 0.95248 1.01157 0.96987 1.20872 0.93599 1.03128 0.98479 1.20493 0.99714 0.98608 0.91353 1.18813 0.91626 1.01749 0.93753 0.76969 0.91638 0.87572 0.84800 0.90396 0.90581 0.86525 0.80814 0.92874 0.93143 0.92090 0.85785 0.86269 0.86566 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 17.05 29.55 0.50 -1.47 16 2 C -0.20 -2.23 10.94 -37.13 -0.41 -2.64 16 3 C 0.16 1.36 5.46 -6.61 -0.04 1.33 16 4 N -0.52 -5.29 4.31 -243.10 -1.05 -6.34 16 5 C 0.14 1.38 5.08 -6.61 -0.03 1.35 16 6 C 0.22 2.82 12.64 -20.80 -0.26 2.56 16 7 N -0.43 -6.31 16.65 42.11 0.70 -5.61 16 8 C 0.01 0.10 4.73 -4.97 -0.02 0.08 16 9 C 0.43 5.81 6.58 -32.98 -0.22 5.60 16 10 O -0.47 -7.61 14.03 5.46 0.08 -7.54 16 11 C -0.31 -4.85 6.11 -104.88 -0.64 -5.49 16 12 C 0.16 2.34 10.70 -16.45 -0.18 2.16 16 13 N -0.42 -7.82 2.70 -115.28 -0.31 -8.14 16 14 C 0.23 4.80 5.68 -5.19 -0.03 4.77 16 15 C -0.55 -13.16 9.39 -34.44 -0.32 -13.48 16 16 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -22.72 13.29 55.43 0.74 -21.99 16 19 Si 0.90 19.34 29.54 -169.99 -5.02 14.32 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 C 0.08 1.57 6.78 -83.95 -0.57 1.00 16 24 C -0.10 -1.77 9.96 -39.41 -0.39 -2.16 16 25 C -0.12 -1.84 10.01 -39.57 -0.40 -2.24 16 26 C -0.14 -2.10 10.03 -39.56 -0.40 -2.50 16 27 C -0.08 -1.37 9.80 -39.39 -0.39 -1.76 16 28 C -0.06 -0.99 6.24 -104.93 -0.65 -1.65 16 29 H 0.21 1.95 7.80 -54.09 -0.42 1.53 16 30 H 0.07 0.41 8.06 -51.93 -0.42 -0.01 16 31 H 0.11 0.75 7.93 -51.93 -0.41 0.33 16 32 H 0.13 1.44 5.79 -51.93 -0.30 1.14 16 33 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.12 0.89 7.93 -51.93 -0.41 0.48 16 36 H 0.17 1.90 7.91 -52.49 -0.42 1.48 16 37 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 40 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.12 1.99 7.38 -52.49 -0.39 1.61 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -30.61 379.99 -8.94 -39.55 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.26 Total: 2.96 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -4.54 Total: -12.95 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.08 Total: -42.07 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.08 Total: -7.54 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.61 -8.94 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281209376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.789 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds