Wall clock time and date at job start Tue Mar 31 2020 18:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47458 * 242.67776 * 3 2 1 5 5 C 1.46897 * 110.99826 * 293.95854 * 4 3 2 6 6 C 1.47199 * 109.47431 * 66.04265 * 5 4 3 7 7 N 2.88938 * 70.21115 * 211.44797 * 2 1 3 8 8 C 1.46900 * 111.00103 * 169.99888 * 4 3 2 9 9 C 1.50704 * 109.46772 * 190.00238 * 8 4 3 10 10 O 1.21395 * 119.99915 * 0.02562 * 9 8 4 11 11 C 1.41725 * 119.99748 * 180.02562 * 9 8 4 12 12 C 1.37863 * 126.91277 * 359.96992 * 11 9 8 13 13 N 1.34667 * 109.62260 * 180.02562 * 12 11 9 14 14 C 1.46500 * 124.64714 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47182 * 265.00076 * 14 13 12 16 16 H 1.07998 * 119.99757 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00020 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99938 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00235 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46867 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47110 * 119.99502 * 19 17 15 22 22 H 1.48493 * 109.47180 * 239.99539 * 19 17 15 23 23 C 1.38023 * 110.70743 * 359.97438 * 13 12 11 24 24 C 1.39142 * 133.03672 * 180.02562 * 23 13 12 25 25 C 1.37777 * 119.94254 * 180.02562 * 24 23 13 26 26 C 1.38718 * 120.64123 * 0.02562 * 25 24 23 27 27 C 1.37805 * 120.26774 * 359.97438 * 26 25 24 28 28 C 1.39191 * 119.66997 * 359.97438 * 27 26 25 29 29 H 4.40892 * 5.52188 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.46975 * 122.67968 * 3 2 1 31 31 H 1.09005 * 109.47426 * 2.67760 * 3 2 1 32 32 H 1.09002 * 109.46943 * 186.04283 * 5 4 3 33 33 H 1.09005 * 109.46807 * 306.04179 * 5 4 3 34 34 H 1.08999 * 109.47010 * 70.00055 * 8 4 3 35 35 H 1.08995 * 109.47143 * 310.00030 * 8 4 3 36 36 H 1.08002 * 125.19167 * 359.97438 * 12 11 9 37 37 H 1.09003 * 109.46920 * 24.99790 * 14 13 12 38 38 H 1.09005 * 109.47102 * 144.99414 * 14 13 12 39 39 H 0.97000 * 120.00038 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.02772 * 0.02562 * 24 23 13 41 41 H 1.08002 * 119.67742 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.86836 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.16366 * 179.70266 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1354 0.6366 1.2305 5 6 2.7852 2.0629 1.2611 6 6 1.3231 2.2074 1.3499 7 7 0.1958 2.3194 1.4184 8 6 4.5844 0.4468 1.3808 9 6 5.0090 0.8907 2.7569 10 8 4.1849 1.3227 3.5366 11 6 6.3705 0.8040 3.1407 12 6 7.4186 0.3388 2.3752 13 7 8.5620 0.4101 3.0830 14 6 9.8771 0.0002 2.5843 15 6 10.1571 -1.4175 3.0119 16 1 9.4284 -1.9588 3.5971 17 6 11.3438 -2.0230 2.6571 18 7 12.2314 -1.3635 1.9450 19 14 11.6912 -3.7800 3.1877 20 1 10.5422 -4.2957 3.9746 21 1 11.8901 -4.6298 1.9863 22 1 12.9175 -3.8111 4.0246 23 6 8.3254 0.9232 4.3423 24 6 9.1518 1.1913 5.4292 25 6 8.6180 1.7158 6.5860 26 6 7.2597 1.9808 6.6811 27 6 6.4252 1.7221 5.6155 28 6 6.9518 1.1932 4.4406 29 1 -1.0501 0.0001 -0.0002 30 1 3.0090 0.5557 -0.8650 31 1 3.0098 -1.0257 -0.0480 32 1 3.2501 2.5326 2.1280 33 1 3.1434 2.5445 0.3512 34 1 5.1081 1.0388 0.6302 35 1 4.8285 -0.6071 1.2475 36 1 7.3352 -0.0276 1.3627 37 1 9.8879 0.0602 1.4960 38 1 10.6424 0.6607 2.9922 39 1 13.0661 -1.7896 1.6950 40 1 10.2106 0.9883 5.3660 41 1 9.2633 1.9218 7.4272 42 1 6.8545 2.3916 7.5941 43 1 5.3672 1.9246 5.6930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281209376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:25 Heat of formation + Delta-G solvation = 108.346762 kcal Electronic energy + Delta-G solvation = -27118.318769 eV Core-core repulsion = 23323.872223 eV Total energy + Delta-G solvation = -3794.446546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34941 -40.37857 -38.55353 -37.99331 -36.74397 -35.39543 -33.89692 -33.45033 -31.15924 -30.95791 -29.57680 -29.18042 -28.32760 -25.65903 -24.52839 -23.69762 -22.54263 -21.79916 -19.92682 -19.13820 -18.82173 -18.76858 -17.86413 -17.43660 -16.95622 -16.57015 -16.36973 -16.18394 -16.00701 -15.60954 -15.34999 -15.05583 -14.79800 -14.71479 -14.56222 -14.34556 -14.16905 -13.97264 -13.56482 -13.53126 -13.44221 -13.34331 -13.05055 -12.78424 -12.71881 -12.48353 -12.44483 -12.36446 -12.28621 -11.72438 -11.50915 -11.30011 -10.95178 -10.72557 -10.41586 -10.37555 -9.37023 -9.10332 -8.57083 -8.26536 -6.48518 0.07605 0.66325 1.05369 1.34563 1.38183 1.43240 1.52877 1.79797 1.96980 2.10718 2.18426 2.36728 2.46568 2.89917 2.99905 3.10430 3.20671 3.54377 3.57526 3.86173 3.95427 4.21764 4.26844 4.31082 4.39281 4.43561 4.57570 4.61180 4.68484 4.69470 4.76286 4.78855 4.83524 4.95737 4.98833 5.07541 5.09974 5.28777 5.57275 5.61983 5.74142 5.79649 5.82492 5.87357 5.93826 6.00977 6.33118 6.42954 6.66741 6.67256 6.69647 7.07760 7.24248 8.73469 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.003001 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.270280 B = 9328.820416 C =11106.435734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C 0.159 3.841 4 N -0.542 5.542 5 C 0.141 3.859 6 C 0.235 3.765 7 N -0.477 5.477 8 C 0.021 3.979 9 C 0.432 3.568 10 O -0.502 6.502 11 C -0.316 4.316 12 C 0.161 3.839 13 N -0.441 5.441 14 C 0.243 3.757 15 C -0.552 4.552 16 H 0.054 0.946 17 C 0.028 3.972 18 N -0.915 5.915 19 Si 0.960 3.040 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.280 1.280 23 C 0.056 3.944 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.137 4.137 27 C -0.095 4.095 28 C -0.080 4.080 29 H 0.220 0.780 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.217 0.783 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.272 0.728 40 H 0.111 0.889 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 4.634 -4.197 11.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.207 4.207 3 C 0.033 3.967 4 N -0.267 5.267 5 C 0.011 3.989 6 C -0.083 4.083 7 N -0.156 5.156 8 C -0.106 4.106 9 C 0.316 3.684 10 O -0.382 6.382 11 C -0.325 4.325 12 C 0.021 3.979 13 N -0.116 5.116 14 C 0.124 3.876 15 C -0.590 4.590 16 H 0.072 0.928 17 C -0.173 4.173 18 N -0.554 5.554 19 Si 0.785 3.215 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.206 1.206 23 C -0.048 4.048 24 C -0.147 4.147 25 C -0.134 4.134 26 C -0.156 4.156 27 C -0.114 4.114 28 C -0.084 4.084 29 H 0.236 0.764 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.234 0.766 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.812 4.696 -3.481 13.179 hybrid contribution 1.188 -0.696 -0.222 1.395 sum -10.624 4.000 -3.703 11.940 Atomic orbital electron populations 1.25343 0.96782 1.00333 0.99774 1.23478 0.95403 1.01000 1.00791 1.19380 0.83451 1.02748 0.91077 1.61387 1.14972 1.12208 1.38181 1.19943 0.81759 0.90875 1.06340 1.29275 0.95550 0.91877 0.91555 1.81054 1.14207 1.09561 1.10775 1.22548 0.85813 1.06317 0.95915 1.20182 0.85381 0.73785 0.89068 1.90487 1.54462 1.38841 1.54425 1.19849 0.95562 1.21463 0.95643 1.23219 0.83157 0.93059 0.98440 1.44463 1.09753 1.46831 1.10516 1.19498 0.76992 0.95028 0.96079 1.21492 1.03589 0.98347 1.35608 0.92817 1.25590 0.95315 1.02009 0.94425 1.69986 1.09039 1.38882 1.37455 0.85466 0.78059 0.79586 0.78382 1.19730 1.19665 1.20560 1.18640 0.95191 1.03102 0.87898 1.20365 0.99011 1.02755 0.92539 1.21051 0.95917 0.99588 0.96847 1.21237 0.93239 1.01967 0.99138 1.20681 1.00033 0.98927 0.91715 1.19232 0.91576 1.02297 0.95261 0.76350 0.88490 0.85750 0.85845 0.86416 0.86557 0.84327 0.76615 0.92600 0.95534 0.91904 0.87077 0.83410 0.83397 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.52 17.05 74.32 1.27 -3.26 16 2 C -0.21 -4.24 10.94 31.12 0.34 -3.90 16 3 C 0.16 2.08 5.46 84.49 0.46 2.54 16 4 N -0.54 -9.17 4.31 -923.04 -3.98 -13.14 16 5 C 0.14 2.37 5.08 84.50 0.43 2.80 16 6 C 0.24 5.66 12.64 89.45 1.13 6.79 16 7 N -0.48 -13.85 16.65 19.99 0.33 -13.51 16 8 C 0.02 0.29 4.73 85.56 0.40 0.69 16 9 C 0.43 10.66 6.58 26.55 0.17 10.84 16 10 O -0.50 -15.66 14.03 -3.39 -0.05 -15.70 16 11 C -0.32 -9.28 6.11 -20.03 -0.12 -9.40 16 12 C 0.16 4.51 10.70 84.17 0.90 5.41 16 13 N -0.44 -16.27 2.70 -518.64 -1.40 -17.68 16 14 C 0.24 10.44 5.68 85.63 0.49 10.92 16 15 C -0.55 -26.69 9.39 25.60 0.24 -26.45 16 16 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 17 C 0.03 1.38 5.46 84.65 0.46 1.84 16 18 N -0.92 -46.89 13.29 21.45 0.28 -46.61 16 19 Si 0.96 39.37 29.54 68.60 2.03 41.40 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 23 C 0.06 2.11 6.78 38.89 0.26 2.37 16 24 C -0.13 -4.56 9.96 22.38 0.22 -4.34 16 25 C -0.12 -3.39 10.01 22.28 0.22 -3.17 16 26 C -0.14 -3.88 10.03 22.28 0.22 -3.66 16 27 C -0.10 -3.09 9.80 22.40 0.22 -2.87 16 28 C -0.08 -2.82 6.24 -20.06 -0.13 -2.94 16 29 H 0.22 4.11 7.80 -4.41 -0.03 4.08 16 30 H 0.10 0.70 8.06 -2.39 -0.02 0.68 16 31 H 0.12 1.19 7.93 -2.38 -0.02 1.17 16 32 H 0.12 2.43 5.79 -2.39 -0.01 2.41 16 33 H 0.12 1.04 8.06 -2.38 -0.02 1.02 16 34 H 0.12 0.76 8.12 -2.39 -0.02 0.74 16 35 H 0.14 1.40 7.93 -2.39 -0.02 1.38 16 36 H 0.22 3.85 7.91 -2.91 -0.02 3.83 16 37 H 0.06 2.35 8.10 -2.39 -0.02 2.33 16 38 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 40 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 41 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 43 H 0.13 3.98 7.38 -2.91 -0.02 3.96 16 Total: -1.00 -69.15 379.99 5.45 -63.70 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.03 Total: 17.31 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 7.20 Total: -15.77 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -4.76 Total: -90.94 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.05 Total: -15.70 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -69.15 5.45 -63.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281209376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.048 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds