Wall clock time and date at job start Tue Mar 31 2020 18:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46510 * 109.47083 * 175.06585 * 3 2 1 5 5 C 1.36972 * 119.99792 * 86.52445 * 4 3 2 6 6 H 1.07997 * 119.99923 * 169.62656 * 5 4 3 7 7 C 1.38981 * 120.00155 * 349.63182 * 5 4 3 8 8 N 1.31414 * 120.00005 * 343.22969 * 7 5 4 9 9 Si 1.86802 * 120.00041 * 163.23543 * 7 5 4 10 10 H 1.48497 * 109.47201 * 59.99624 * 9 7 5 11 11 H 1.48504 * 109.47092 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46644 * 299.99439 * 9 7 5 13 13 C 1.34777 * 119.99753 * 266.52916 * 4 3 2 14 14 O 1.21627 * 119.99379 * 185.28907 * 13 4 3 15 15 C 1.47335 * 120.00267 * 5.28517 * 13 4 3 16 16 C 1.41375 * 126.41531 * 56.80057 * 15 13 4 17 17 N 1.30465 * 108.06932 * 179.97438 * 16 15 13 18 18 N 1.39936 * 108.93594 * 0.02562 * 17 16 15 19 19 C 1.40147 * 125.77118 * 179.97438 * 18 17 16 20 20 C 1.38841 * 120.06753 * 144.70017 * 19 18 17 21 21 C 1.38117 * 119.92949 * 179.79577 * 20 19 18 22 22 C 1.38280 * 120.06841 * 0.45920 * 21 20 19 23 23 C 1.38283 * 120.13456 * 359.79026 * 22 21 20 24 24 C 1.38117 * 120.06738 * 359.97438 * 23 22 21 25 25 C 1.34568 * 108.45846 * 359.72679 * 18 17 16 26 26 C 1.50704 * 126.31455 * 180.25670 * 25 18 17 27 27 C 1.52997 * 117.49956 * 195.55412 * 26 25 18 28 28 C 1.52997 * 117.49384 * 126.89155 * 26 25 18 29 29 H 4.40651 * 5.51445 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47172 * 55.06834 * 3 2 1 31 31 H 1.08996 * 109.47292 * 295.06321 * 3 2 1 32 32 H 0.96997 * 119.99930 * 180.02562 * 8 7 5 33 33 H 1.08000 * 125.96265 * 0.03644 * 16 15 13 34 34 H 1.08004 * 120.03552 * 0.02562 * 20 19 18 35 35 H 1.08002 * 119.96714 * 180.23058 * 21 20 19 36 36 H 1.08003 * 119.93312 * 179.77049 * 22 21 20 37 37 H 1.08003 * 119.96163 * 180.02562 * 23 22 21 38 38 H 1.08002 * 120.03046 * 180.02562 * 24 23 22 39 39 H 1.09003 * 115.55128 * 341.22934 * 26 25 18 40 40 H 1.08996 * 117.49656 * 0.02562 * 27 26 25 41 41 H 1.08996 * 117.49932 * 145.02762 * 27 26 25 42 42 H 1.09001 * 117.49915 * 214.98093 * 28 26 25 43 43 H 1.08999 * 117.50515 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3771 -0.1188 5 6 3.2938 2.1461 1.0033 6 1 3.8070 3.0942 0.9394 7 6 2.7959 1.7063 2.2240 8 7 1.9028 0.7431 2.2608 9 14 3.3962 2.4846 3.8126 10 1 3.0857 3.9367 3.8006 11 1 2.7160 1.8429 4.9662 12 1 4.8639 2.2932 3.9337 13 6 3.4247 1.8865 -1.3322 14 8 3.9198 2.9936 -1.4240 15 6 3.1431 1.1022 -2.5473 16 6 1.8892 0.5770 -2.9354 17 7 2.0471 -0.0533 -4.0667 18 7 3.3894 0.0353 -4.4524 19 6 3.9466 -0.5188 -5.6128 20 6 4.9634 0.1480 -6.2830 21 6 5.5134 -0.4027 -7.4240 22 6 5.0459 -1.6122 -7.9043 23 6 4.0297 -2.2761 -7.2419 24 6 3.4790 -1.7329 -6.0977 25 6 4.0535 0.7472 -3.5234 26 6 5.5208 1.0906 -3.5427 27 6 6.1479 1.5846 -2.2375 28 6 5.9035 2.5639 -3.3884 29 1 -1.0503 -0.0005 -0.0001 30 1 3.0095 -0.5876 -0.8425 31 1 3.0095 -0.4345 0.9309 32 1 1.5551 0.4364 3.1128 33 1 0.9622 0.6806 -2.3910 34 1 5.3265 1.0945 -5.9105 35 1 6.3070 0.1136 -7.9437 36 1 5.4750 -2.0390 -8.7988 37 1 3.6669 -3.2208 -7.6192 38 1 2.6856 -2.2521 -5.5805 39 1 6.1389 0.4759 -4.1971 40 1 5.4994 1.6608 -1.3648 41 1 7.1788 1.2953 -2.0334 42 1 6.7737 2.9184 -3.9409 43 1 5.0941 3.2847 -3.2725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281563993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:51 Heat of formation + Delta-G solvation = 188.337654 kcal Electronic energy + Delta-G solvation = -28727.555467 eV Core-core repulsion = 24936.577586 eV Total energy + Delta-G solvation = -3790.977881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51981 -39.19035 -38.24408 -36.73522 -35.00880 -33.46013 -31.94272 -31.27802 -31.21777 -29.73746 -28.95450 -26.45655 -25.13670 -23.71834 -23.20520 -22.34190 -21.97281 -21.11419 -20.26767 -18.45203 -17.90976 -17.72649 -16.59737 -16.43108 -15.98627 -15.40201 -15.18118 -14.85758 -14.37085 -14.22149 -14.11615 -13.96631 -13.79997 -13.61390 -13.31036 -12.81060 -12.71884 -12.48166 -12.19874 -11.84853 -11.53632 -11.42394 -11.21784 -11.00306 -10.85997 -10.77415 -10.53896 -10.47819 -10.34808 -10.02731 -9.88394 -9.34002 -9.26466 -9.19059 -8.76266 -8.56931 -8.43977 -7.92754 -7.86102 -6.30880 -3.85577 0.82807 1.13757 2.09610 2.50301 2.81209 3.19117 3.24073 3.27297 3.54868 3.83919 3.92305 4.14524 4.21563 4.26302 4.57081 4.62082 4.71880 4.90132 4.91399 5.07140 5.11129 5.16021 5.17001 5.20618 5.36227 5.39292 5.54475 5.61019 5.77738 5.89667 5.91218 6.00360 6.07107 6.13648 6.24086 6.25751 6.28834 6.42376 6.58385 6.63563 6.76847 6.85321 6.89203 7.13281 7.31615 7.53679 7.89094 8.01276 8.41714 8.92347 9.10493 9.34090 9.90176 10.64440 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.003681 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.336160 B = 7604.579636 C = 8656.259203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.091 4.091 3 C 0.236 3.764 4 N -0.430 5.430 5 C -0.310 4.310 6 H 0.109 0.891 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.520 3.480 14 O -0.577 6.577 15 C -0.242 4.242 16 C 0.093 3.907 17 N -0.300 5.300 18 N -0.325 5.325 19 C 0.165 3.835 20 C -0.134 4.134 21 C -0.100 4.100 22 C -0.129 4.129 23 C -0.102 4.102 24 C -0.113 4.113 25 C 0.154 3.846 26 C -0.126 4.126 27 C -0.158 4.158 28 C -0.148 4.148 29 H 0.197 0.803 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.269 0.731 33 H 0.192 0.808 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -6.447 -14.514 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.093 4.093 3 C 0.113 3.887 4 N -0.146 5.146 5 C -0.437 4.437 6 H 0.126 0.874 7 C -0.174 4.174 8 N -0.503 5.503 9 Si 0.754 3.246 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.309 3.691 14 O -0.463 6.463 15 C -0.256 4.256 16 C -0.095 4.095 17 N -0.117 5.117 18 N -0.100 5.100 19 C 0.073 3.927 20 C -0.154 4.154 21 C -0.119 4.119 22 C -0.148 4.148 23 C -0.121 4.121 24 C -0.133 4.133 25 C 0.029 3.971 26 C -0.146 4.146 27 C -0.195 4.195 28 C -0.186 4.186 29 H 0.214 0.786 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.209 0.791 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.672 -6.716 -15.304 17.649 hybrid contribution -0.033 0.585 1.575 1.681 sum 5.639 -6.130 -13.729 16.058 Atomic orbital electron populations 1.24185 0.95282 1.02415 1.07738 1.22967 0.94094 0.98030 0.94180 1.18381 0.84563 0.84344 1.01459 1.43638 1.55144 1.10812 1.05052 1.19703 1.35309 1.04460 0.84237 0.87362 1.25299 0.95161 0.97259 0.99652 1.70017 1.25140 1.28681 1.26451 0.85984 0.78979 0.79239 0.80445 1.19886 1.21065 1.19859 1.16784 0.84897 0.85890 0.81549 1.90595 1.48904 1.20818 1.85937 1.20376 0.93101 1.11518 1.00586 1.24298 0.98958 0.93716 0.92479 1.77220 0.92515 1.25596 1.16396 1.45406 1.06634 1.41403 1.16534 1.17506 0.95642 0.93313 0.86266 1.21239 0.97655 1.00728 0.95815 1.20994 0.99721 0.95853 0.95310 1.21213 0.97543 0.95681 1.00356 1.21050 0.96361 1.00002 0.94697 1.21041 1.01037 0.93780 0.97469 1.20569 0.93513 0.94154 0.88906 1.20574 0.88811 1.00138 1.05041 1.23377 1.01411 1.01435 0.93282 1.23192 1.03470 0.90624 1.01282 0.78586 0.92487 0.87025 0.91946 0.79108 0.84579 0.85164 0.85615 0.85258 0.84844 0.86817 0.85695 0.88944 0.89088 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.75 18.76 29.55 0.55 -5.19 16 2 C -0.09 -2.03 9.16 -37.12 -0.34 -2.37 16 3 C 0.24 5.31 4.80 -6.82 -0.03 5.28 16 4 N -0.43 -10.54 2.59 -119.18 -0.31 -10.85 16 5 C -0.31 -8.17 9.47 -14.98 -0.14 -8.31 16 6 H 0.11 2.98 7.25 -52.49 -0.38 2.60 16 7 C 0.03 0.75 5.10 -17.46 -0.09 0.66 16 8 N -0.86 -21.86 8.55 55.50 0.47 -21.39 16 9 Si 0.93 20.04 29.59 -169.99 -5.03 15.01 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.52 12.34 5.00 -12.56 -0.06 12.27 16 14 O -0.58 -14.79 12.82 5.25 0.07 -14.72 16 15 C -0.24 -5.04 4.43 -105.05 -0.47 -5.50 16 16 C 0.09 1.84 10.36 -16.94 -0.18 1.66 16 17 N -0.30 -5.65 12.25 30.88 0.38 -5.27 16 18 N -0.33 -5.67 3.71 -6.49 -0.02 -5.70 16 19 C 0.16 2.39 6.32 -83.61 -0.53 1.86 16 20 C -0.13 -1.62 8.18 -39.40 -0.32 -1.95 16 21 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 22 C -0.13 -1.12 10.04 -39.55 -0.40 -1.52 16 23 C -0.10 -0.99 10.04 -39.61 -0.40 -1.39 16 24 C -0.11 -1.43 9.75 -39.40 -0.38 -1.82 16 25 C 0.15 2.84 6.49 -81.43 -0.53 2.31 16 26 C -0.13 -1.98 4.46 -91.77 -0.41 -2.39 16 27 C -0.16 -2.66 9.48 -26.69 -0.25 -2.91 16 28 C -0.15 -2.32 9.63 -26.69 -0.26 -2.58 16 29 H 0.20 3.36 7.80 -54.08 -0.42 2.94 16 30 H 0.06 1.19 6.59 -51.93 -0.34 0.85 16 31 H 0.11 2.64 6.42 -51.93 -0.33 2.30 16 32 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.19 3.70 6.33 -52.49 -0.33 3.37 16 34 H 0.14 1.63 6.19 -52.48 -0.33 1.31 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 38 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.11 1.51 6.49 -51.93 -0.34 1.18 16 40 H 0.13 2.61 4.50 -51.93 -0.23 2.37 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.12 2.26 6.49 -51.93 -0.34 1.92 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -29.84 357.20 -8.40 -38.24 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.71 Total: 12.51 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -4.63 Total: -13.21 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.52 Total: -43.21 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.07 Total: -14.72 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.84 -8.40 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281563993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.576 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds