Wall clock time and date at job start Tue Mar 31 2020 18:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46510 * 109.47083 * 175.06585 * 3 2 1 5 5 C 1.36972 * 119.99792 * 86.52445 * 4 3 2 6 6 H 1.07997 * 119.99923 * 169.62656 * 5 4 3 7 7 C 1.38981 * 120.00155 * 349.63182 * 5 4 3 8 8 N 1.31414 * 120.00005 * 343.22969 * 7 5 4 9 9 Si 1.86802 * 120.00041 * 163.23543 * 7 5 4 10 10 H 1.48497 * 109.47201 * 59.99624 * 9 7 5 11 11 H 1.48504 * 109.47092 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46644 * 299.99439 * 9 7 5 13 13 C 1.34777 * 119.99753 * 266.52916 * 4 3 2 14 14 O 1.21627 * 119.99379 * 185.28907 * 13 4 3 15 15 C 1.47335 * 120.00267 * 5.28517 * 13 4 3 16 16 C 1.41375 * 126.41531 * 56.80057 * 15 13 4 17 17 N 1.30465 * 108.06932 * 179.97438 * 16 15 13 18 18 N 1.39936 * 108.93594 * 0.02562 * 17 16 15 19 19 C 1.40147 * 125.77118 * 179.97438 * 18 17 16 20 20 C 1.38841 * 120.06753 * 144.70017 * 19 18 17 21 21 C 1.38117 * 119.92949 * 179.79577 * 20 19 18 22 22 C 1.38280 * 120.06841 * 0.45920 * 21 20 19 23 23 C 1.38283 * 120.13456 * 359.79026 * 22 21 20 24 24 C 1.38117 * 120.06738 * 359.97438 * 23 22 21 25 25 C 1.34568 * 108.45846 * 359.72679 * 18 17 16 26 26 C 1.50704 * 126.31455 * 180.25670 * 25 18 17 27 27 C 1.52997 * 117.49956 * 195.55412 * 26 25 18 28 28 C 1.52997 * 117.49384 * 126.89155 * 26 25 18 29 29 H 4.40651 * 5.51445 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47172 * 55.06834 * 3 2 1 31 31 H 1.08996 * 109.47292 * 295.06321 * 3 2 1 32 32 H 0.96997 * 119.99930 * 180.02562 * 8 7 5 33 33 H 1.08000 * 125.96265 * 0.03644 * 16 15 13 34 34 H 1.08004 * 120.03552 * 0.02562 * 20 19 18 35 35 H 1.08002 * 119.96714 * 180.23058 * 21 20 19 36 36 H 1.08003 * 119.93312 * 179.77049 * 22 21 20 37 37 H 1.08003 * 119.96163 * 180.02562 * 23 22 21 38 38 H 1.08002 * 120.03046 * 180.02562 * 24 23 22 39 39 H 1.09003 * 115.55128 * 341.22934 * 26 25 18 40 40 H 1.08996 * 117.49656 * 0.02562 * 27 26 25 41 41 H 1.08996 * 117.49932 * 145.02762 * 27 26 25 42 42 H 1.09001 * 117.49915 * 214.98093 * 28 26 25 43 43 H 1.08999 * 117.50515 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3771 -0.1188 5 6 3.2938 2.1461 1.0033 6 1 3.8070 3.0942 0.9394 7 6 2.7959 1.7063 2.2240 8 7 1.9028 0.7431 2.2608 9 14 3.3962 2.4846 3.8126 10 1 3.0857 3.9367 3.8006 11 1 2.7160 1.8429 4.9662 12 1 4.8639 2.2932 3.9337 13 6 3.4247 1.8865 -1.3322 14 8 3.9198 2.9936 -1.4240 15 6 3.1431 1.1022 -2.5473 16 6 1.8892 0.5770 -2.9354 17 7 2.0471 -0.0533 -4.0667 18 7 3.3894 0.0353 -4.4524 19 6 3.9466 -0.5188 -5.6128 20 6 4.9634 0.1480 -6.2830 21 6 5.5134 -0.4027 -7.4240 22 6 5.0459 -1.6122 -7.9043 23 6 4.0297 -2.2761 -7.2419 24 6 3.4790 -1.7329 -6.0977 25 6 4.0535 0.7472 -3.5234 26 6 5.5208 1.0906 -3.5427 27 6 6.1479 1.5846 -2.2375 28 6 5.9035 2.5639 -3.3884 29 1 -1.0503 -0.0005 -0.0001 30 1 3.0095 -0.5876 -0.8425 31 1 3.0095 -0.4345 0.9309 32 1 1.5551 0.4364 3.1128 33 1 0.9622 0.6806 -2.3910 34 1 5.3265 1.0945 -5.9105 35 1 6.3070 0.1136 -7.9437 36 1 5.4750 -2.0390 -8.7988 37 1 3.6669 -3.2208 -7.6192 38 1 2.6856 -2.2521 -5.5805 39 1 6.1389 0.4759 -4.1971 40 1 5.4994 1.6608 -1.3648 41 1 7.1788 1.2953 -2.0334 42 1 6.7737 2.9184 -3.9409 43 1 5.0941 3.2847 -3.2725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281563993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:50 Heat of formation + Delta-G solvation = 173.569401 kcal Electronic energy + Delta-G solvation = -28728.195867 eV Core-core repulsion = 24936.577586 eV Total energy + Delta-G solvation = -3791.618280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.91507 -40.44654 -39.67557 -38.12836 -36.82405 -34.68354 -33.75734 -33.04342 -32.11553 -31.12579 -30.14679 -28.26656 -26.83567 -25.18270 -24.27210 -23.42997 -23.18744 -22.63958 -21.50668 -20.00477 -19.70888 -19.07119 -18.21386 -17.71017 -17.39641 -16.64469 -16.53359 -16.32988 -15.97247 -15.73738 -15.46896 -15.27847 -15.01307 -14.84362 -14.48872 -14.37284 -14.16089 -13.98324 -13.76682 -13.37582 -12.79639 -12.69007 -12.61239 -12.44466 -12.29317 -12.20318 -12.13085 -12.10010 -11.86738 -11.31993 -11.18598 -11.09255 -10.98145 -10.55745 -10.34431 -10.00791 -9.84120 -9.74497 -9.20226 -8.23268 -5.86035 -0.20243 0.32978 0.82705 1.19649 1.25392 1.44892 1.46399 1.54461 2.10377 2.15720 2.36525 2.47042 2.69794 2.96193 3.09142 3.25289 3.33489 3.57335 3.79720 3.91361 3.92662 3.93656 3.98764 4.09740 4.22483 4.26450 4.40050 4.42852 4.50050 4.61102 4.66389 4.70965 4.82349 4.96161 5.02011 5.04175 5.20026 5.25630 5.36504 5.40779 5.41966 5.47715 5.50046 5.50993 5.77180 6.06954 6.12767 6.44322 6.49880 7.16593 7.21481 7.44355 8.02843 8.69644 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.003681 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.336160 B = 7604.579636 C = 8656.259203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.129 4.129 3 C 0.247 3.753 4 N -0.441 5.441 5 C -0.343 4.343 6 H 0.085 0.915 7 C 0.001 3.999 8 N -0.874 5.874 9 Si 0.988 3.012 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.268 1.268 13 C 0.526 3.474 14 O -0.607 6.607 15 C -0.277 4.277 16 C 0.085 3.915 17 N -0.308 5.308 18 N -0.313 5.313 19 C 0.117 3.883 20 C -0.139 4.139 21 C -0.093 4.093 22 C -0.113 4.113 23 C -0.099 4.099 24 C -0.127 4.127 25 C 0.160 3.840 26 C -0.115 4.115 27 C -0.172 4.172 28 C -0.137 4.137 29 H 0.231 0.769 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.271 0.729 33 H 0.188 0.812 34 H 0.135 0.865 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.120 0.880 39 H 0.147 0.853 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 -7.853 -17.202 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.131 4.131 3 C 0.125 3.875 4 N -0.157 5.157 5 C -0.470 4.470 6 H 0.103 0.897 7 C -0.202 4.202 8 N -0.511 5.511 9 Si 0.812 3.188 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.193 1.193 13 C 0.315 3.685 14 O -0.494 6.494 15 C -0.291 4.291 16 C -0.102 4.102 17 N -0.126 5.126 18 N -0.087 5.087 19 C 0.027 3.973 20 C -0.159 4.159 21 C -0.112 4.112 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.147 4.147 25 C 0.032 3.968 26 C -0.135 4.135 27 C -0.209 4.209 28 C -0.175 4.175 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.204 0.796 34 H 0.153 0.847 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.175 0.825 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.099 0.901 41 H 0.142 0.858 42 H 0.152 0.848 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.304 -8.161 -18.023 21.090 hybrid contribution -0.518 0.942 2.176 2.427 sum 6.786 -7.219 -15.847 18.689 Atomic orbital electron populations 1.25003 0.96172 1.00708 1.06028 1.23148 0.94585 0.99600 0.95722 1.18183 0.85119 0.83425 1.00807 1.43723 1.55675 1.11360 1.04983 1.19632 1.36918 1.04630 0.85849 0.89730 1.25967 0.94818 0.97702 1.01700 1.70136 1.25032 1.28975 1.26995 0.85079 0.78682 0.78027 0.77024 1.20369 1.20007 1.19338 1.17134 0.83454 0.85714 0.82178 1.90549 1.49990 1.22260 1.86596 1.20156 0.94533 1.13770 1.00646 1.24161 0.98604 0.94369 0.93033 1.77133 0.93942 1.25539 1.15937 1.45600 1.05817 1.40317 1.17009 1.17990 0.97885 0.94980 0.86493 1.21384 0.97064 1.00769 0.96702 1.21426 0.99767 0.96025 0.93950 1.21723 0.95929 0.94764 1.00671 1.21412 0.96131 1.00919 0.93300 1.21127 1.01270 0.93544 0.98741 1.20904 0.94583 0.93174 0.88118 1.20745 0.87428 1.00631 1.04676 1.23301 1.02240 1.03141 0.92252 1.23154 1.03683 0.89696 1.00947 0.75259 0.91664 0.88689 0.91825 0.79562 0.84682 0.81769 0.81754 0.82487 0.86203 0.83518 0.90131 0.85832 0.84785 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.86 18.76 74.32 1.39 -9.47 16 2 C -0.13 -5.96 9.16 31.13 0.29 -5.68 16 3 C 0.25 11.79 4.80 84.57 0.41 12.19 16 4 N -0.44 -23.03 2.59 -649.22 -1.68 -24.71 16 5 C -0.34 -19.15 9.47 84.07 0.80 -18.36 16 6 H 0.08 5.00 7.25 -2.91 -0.02 4.98 16 7 C 0.00 0.04 5.10 84.93 0.43 0.47 16 8 N -0.87 -45.23 8.55 21.67 0.19 -45.05 16 9 Si 0.99 42.08 29.59 68.60 2.03 44.11 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 C 0.53 26.65 5.00 86.64 0.43 27.08 16 14 O -0.61 -33.38 12.82 -4.12 -0.05 -33.43 16 15 C -0.28 -12.18 4.43 -20.14 -0.09 -12.27 16 16 C 0.09 3.54 10.36 85.67 0.89 4.43 16 17 N -0.31 -11.97 12.25 -56.21 -0.69 -12.66 16 18 N -0.31 -11.07 3.71 -174.45 -0.65 -11.72 16 19 C 0.12 3.26 6.32 38.10 0.24 3.50 16 20 C -0.14 -3.00 8.18 22.39 0.18 -2.82 16 21 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 22 C -0.11 -1.36 10.04 22.29 0.22 -1.14 16 23 C -0.10 -1.56 10.04 22.25 0.22 -1.34 16 24 C -0.13 -3.04 9.75 22.39 0.22 -2.82 16 25 C 0.16 6.05 6.49 42.11 0.27 6.32 16 26 C -0.12 -3.55 4.46 -11.54 -0.05 -3.60 16 27 C -0.17 -5.84 9.48 30.62 0.29 -5.55 16 28 C -0.14 -4.25 9.63 30.62 0.29 -3.95 16 29 H 0.23 7.56 7.80 -4.40 -0.03 7.53 16 30 H 0.07 2.91 6.59 -2.39 -0.02 2.90 16 31 H 0.10 4.75 6.42 -2.39 -0.02 4.74 16 32 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 33 H 0.19 7.70 6.33 -2.91 -0.02 7.68 16 34 H 0.14 2.90 6.19 -2.91 -0.02 2.88 16 35 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.15 3.52 6.49 -2.39 -0.02 3.51 16 40 H 0.08 3.57 4.50 -2.39 -0.01 3.56 16 41 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.08 3.25 6.49 -2.39 -0.02 3.23 16 Total: -1.00 -70.17 357.20 6.86 -63.31 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 1.05 Total: 34.24 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 6.66 Total: -14.09 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -2.83 Total: -94.14 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.05 Total: -33.43 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.17 6.86 -63.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281563993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.878 kcal (2) G-P(sol) polarization free energy of solvation -70.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds