Wall clock time and date at job start Tue Mar 31 2020 18:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46888 * 36.62666 * 3 2 1 5 5 C 1.36898 * 119.99785 * 262.78650 * 4 3 2 6 6 H 1.08008 * 119.99750 * 206.02198 * 5 4 3 7 7 C 1.39021 * 120.00251 * 26.02588 * 5 4 3 8 8 N 1.31380 * 120.00200 * 10.49615 * 7 5 4 9 9 Si 1.86804 * 119.99884 * 190.50279 * 7 5 4 10 10 H 1.48496 * 109.47220 * 60.00028 * 9 7 5 11 11 H 1.48500 * 109.46938 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46993 * 299.99527 * 9 7 5 13 13 C 1.34780 * 119.99942 * 82.79015 * 4 3 2 14 14 O 1.21610 * 119.99731 * 5.33881 * 13 4 3 15 15 C 1.47551 * 119.99921 * 185.33627 * 13 4 3 16 16 N 1.31947 * 126.50192 * 5.86952 * 15 13 4 17 17 N 1.28469 * 110.09369 * 179.97438 * 16 15 13 18 18 C 1.40103 * 124.95244 * 180.25249 * 17 16 15 19 19 C 1.38860 * 120.06596 * 144.41655 * 18 17 16 20 20 C 1.38118 * 119.92815 * 179.78996 * 19 18 17 21 21 C 1.38286 * 120.06753 * 0.46939 * 20 19 18 22 22 C 1.38276 * 120.13909 * 359.78899 * 21 20 19 23 23 C 1.38116 * 120.07112 * 359.97327 * 22 21 20 24 24 C 1.36074 * 110.08835 * 359.97438 * 17 16 15 25 25 C 1.35008 * 107.00923 * 0.02562 * 24 17 16 26 26 C 1.50957 * 110.51909 * 179.97438 * 25 24 17 27 27 C 1.54509 * 104.97156 * 343.23185 * 26 25 24 28 28 C 1.51229 * 142.81839 * 180.02562 * 24 17 16 29 29 H 4.40639 * 5.51443 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47227 * 276.62451 * 3 2 1 31 31 H 1.08999 * 109.46875 * 156.62555 * 3 2 1 32 32 H 0.97002 * 120.00378 * 179.97438 * 8 7 5 33 33 H 1.08003 * 120.03847 * 0.03298 * 19 18 17 34 34 H 1.08004 * 119.96258 * 180.23431 * 20 19 18 35 35 H 1.07993 * 119.92799 * 179.76446 * 21 20 19 36 36 H 1.07997 * 119.96846 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.03470 * 180.02562 * 23 22 21 38 38 H 1.09000 * 110.34093 * 224.35323 * 26 25 24 39 39 H 1.09001 * 110.43003 * 102.15268 * 26 25 24 40 40 H 1.09003 * 110.93284 * 267.31030 * 27 26 25 41 41 H 1.09000 * 110.93324 * 143.64135 * 27 26 25 42 42 H 1.09003 * 110.32324 * 315.69797 * 28 24 17 43 43 H 1.09001 * 110.32463 * 77.81009 * 28 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1076 -0.8240 5 6 3.5038 -2.2872 -0.2355 6 1 4.2262 -2.9288 -0.7183 7 6 2.9487 -2.6594 0.9836 8 7 1.9270 -1.9927 1.4711 9 14 3.6558 -4.1073 1.9286 10 1 5.0808 -3.8405 2.2498 11 1 2.8921 -4.2968 3.1880 12 1 3.5567 -5.3353 1.0996 13 6 3.2212 -0.9658 -2.1616 14 8 2.9867 0.1113 -2.6752 15 6 3.6004 -2.1173 -3.0026 16 7 3.7761 -3.3608 -2.5978 17 7 4.1012 -4.1069 -3.5918 18 6 4.3559 -5.4823 -3.5136 19 6 3.9841 -6.3191 -4.5575 20 6 4.2405 -7.6741 -4.4793 21 6 4.8579 -8.1988 -3.3587 22 6 5.2245 -7.3689 -2.3152 23 6 4.9753 -6.0124 -2.3895 24 6 4.1561 -3.3674 -4.7328 25 6 3.8438 -2.0979 -4.3961 26 6 3.8817 -1.2034 -5.6115 27 6 4.6743 -2.0022 -6.6703 28 6 4.4371 -3.4595 -6.2159 29 1 -1.0499 -0.0004 0.0000 30 1 3.0094 -0.1177 1.0208 31 1 3.0089 0.9442 -0.4077 32 1 1.5395 -2.2525 2.3215 33 1 3.4986 -5.9104 -5.4314 34 1 3.9550 -8.3249 -5.2926 35 1 5.0539 -9.2591 -3.2983 36 1 5.7069 -7.7816 -1.4415 37 1 5.2622 -5.3646 -1.5743 38 1 4.3941 -0.2699 -5.3792 39 1 2.8712 -1.0017 -5.9672 40 1 5.7343 -1.7509 -6.6347 41 1 4.2692 -1.8346 -7.6683 42 1 5.3277 -4.0617 -6.3958 43 1 3.5805 -3.8861 -6.7378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281601469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:27 Heat of formation + Delta-G solvation = 147.686333 kcal Electronic energy + Delta-G solvation = -28644.782187 eV Core-core repulsion = 24852.041532 eV Total energy + Delta-G solvation = -3792.740654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.92738 -40.45191 -39.93069 -37.77481 -36.98975 -34.51493 -33.80216 -33.17507 -32.09598 -30.52565 -29.66070 -28.85469 -28.06289 -26.85294 -24.77721 -23.77822 -22.86355 -22.04381 -20.89981 -20.73500 -19.55753 -18.72244 -18.49680 -17.59473 -17.35084 -17.17987 -16.35385 -16.20974 -16.05892 -15.88840 -15.33002 -15.31064 -14.81655 -14.50009 -14.38850 -14.15125 -13.94394 -13.78037 -13.67025 -13.61209 -13.43123 -12.87067 -12.79994 -12.62216 -12.52312 -12.25423 -12.19190 -12.01962 -11.90368 -11.42583 -11.29420 -11.15478 -10.81355 -10.65292 -10.53120 -10.05099 -9.84702 -9.62164 -9.23824 -8.27769 -5.95431 -0.14596 0.29916 0.84712 1.22397 1.36743 1.40579 1.45230 1.48442 1.97812 2.28483 2.38408 2.52636 2.69163 3.02512 3.14009 3.27139 3.65190 3.74961 3.88045 3.88990 3.98859 4.17776 4.20058 4.28001 4.30164 4.39160 4.43010 4.60549 4.69034 4.78314 4.82307 4.85426 4.96295 4.98529 5.00868 5.14124 5.16592 5.29476 5.33206 5.35064 5.37185 5.43818 5.48144 5.60690 5.73260 5.80430 6.18416 6.47642 6.94670 7.09844 7.14305 7.47483 7.84205 8.70480 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.005590 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.970918 B = 5007.489095 C = 7480.137773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.142 4.142 3 C 0.245 3.755 4 N -0.430 5.430 5 C -0.335 4.335 6 H 0.114 0.886 7 C -0.003 4.003 8 N -0.881 5.881 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.270 1.270 13 C 0.516 3.484 14 O -0.623 6.623 15 C 0.006 3.994 16 N -0.252 5.252 17 N -0.238 5.238 18 C 0.103 3.897 19 C -0.122 4.122 20 C -0.092 4.092 21 C -0.108 4.108 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.021 4.021 25 C -0.202 4.202 26 C -0.045 4.045 27 C -0.098 4.098 28 C -0.027 4.027 29 H 0.236 0.764 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.270 0.730 33 H 0.144 0.856 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.150 0.850 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -13.676 -14.131 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.144 4.144 3 C 0.123 3.877 4 N -0.146 5.146 5 C -0.464 4.464 6 H 0.131 0.869 7 C -0.206 4.206 8 N -0.518 5.518 9 Si 0.806 3.194 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.195 1.195 13 C 0.306 3.694 14 O -0.510 6.510 15 C -0.153 4.153 16 N -0.083 5.083 17 N -0.019 5.019 18 C 0.014 3.986 19 C -0.142 4.142 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.212 4.212 26 C -0.083 4.083 27 C -0.136 4.136 28 C -0.065 4.065 29 H 0.252 0.748 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.162 0.838 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.168 0.832 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.482 -13.889 -13.186 20.218 hybrid contribution -0.343 0.525 1.037 1.212 sum 6.139 -13.364 -12.148 19.075 Atomic orbital electron populations 1.25077 0.96302 1.03026 1.03113 1.23386 0.95025 0.97876 0.98103 1.18011 0.84840 0.88641 0.96231 1.43773 1.53666 1.13293 1.03824 1.20283 1.23618 0.98019 1.04475 0.86869 1.26205 0.94988 1.00835 0.98565 1.70118 1.20754 1.41068 1.19865 0.85147 0.78644 0.78340 0.77264 1.18808 1.20283 1.19531 1.17448 0.83210 0.86794 0.81955 1.90557 1.58815 1.27856 1.73772 1.21509 1.08622 0.91573 0.93588 1.74422 1.18007 1.02514 1.13405 1.42835 1.48084 1.06812 1.04213 1.18126 1.02757 0.78725 0.98989 1.21253 1.00756 0.94246 0.97917 1.21478 0.97017 0.93074 0.99446 1.21731 0.96785 1.01652 0.92467 1.21377 0.99345 0.91126 1.00596 1.21152 0.99619 0.97625 0.96811 1.23050 1.06569 0.90581 0.94114 1.21411 1.08503 0.98011 0.93291 1.20468 1.01290 0.96876 0.89673 1.22457 1.00960 0.91352 0.98794 1.20865 1.03932 0.99661 0.82074 0.74778 0.88198 0.91372 0.91993 0.83798 0.80936 0.81478 0.83211 0.87656 0.92163 0.90673 0.89860 0.86325 0.88325 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.40 19.25 74.32 1.43 -10.97 16 2 C -0.14 -7.67 11.34 31.13 0.35 -7.32 16 3 C 0.24 13.28 5.08 84.58 0.43 13.71 16 4 N -0.43 -24.73 2.59 -649.00 -1.68 -26.41 16 5 C -0.34 -18.98 8.41 84.09 0.71 -18.27 16 6 H 0.11 6.42 5.46 -2.91 -0.02 6.41 16 7 C 0.00 -0.16 5.07 84.95 0.43 0.27 16 8 N -0.88 -48.83 9.25 21.68 0.20 -48.63 16 9 Si 0.98 42.80 29.57 68.60 2.03 44.83 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 13 C 0.52 29.85 7.55 86.70 0.65 30.50 16 14 O -0.62 -37.39 16.60 -4.06 -0.07 -37.46 16 15 C 0.01 0.33 6.81 42.38 0.29 0.62 16 16 N -0.25 -12.43 8.35 -48.24 -0.40 -12.83 16 17 N -0.24 -9.49 3.47 -175.16 -0.61 -10.10 16 18 C 0.10 3.35 6.33 38.12 0.24 3.59 16 19 C -0.12 -2.77 9.44 22.39 0.21 -2.56 16 20 C -0.09 -1.43 10.04 22.25 0.22 -1.21 16 21 C -0.11 -1.70 10.04 22.29 0.22 -1.47 16 22 C -0.11 -2.35 10.04 22.25 0.22 -2.12 16 23 C -0.13 -4.19 9.69 22.39 0.22 -3.97 16 24 C -0.02 -0.72 6.93 41.33 0.29 -0.43 16 25 C -0.20 -8.49 6.82 -19.73 -0.13 -8.63 16 26 C -0.04 -1.43 6.78 30.44 0.21 -1.22 16 27 C -0.10 -1.92 7.13 31.61 0.23 -1.70 16 28 C -0.03 -0.55 6.11 30.52 0.19 -0.37 16 29 H 0.24 8.92 7.80 -4.42 -0.03 8.88 16 30 H 0.10 5.40 6.65 -2.39 -0.02 5.39 16 31 H 0.07 3.56 7.57 -2.39 -0.02 3.54 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.14 2.76 7.21 -2.91 -0.02 2.74 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.11 3.91 8.00 -2.91 -0.02 3.89 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -81.20 368.03 6.91 -74.30 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 1.03 Total: 27.86 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 6.41 Total: -11.55 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -2.49 Total: -97.98 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.07 Total: -37.46 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -81.20 6.91 -74.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281601469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.981 kcal (2) G-P(sol) polarization free energy of solvation -81.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds