Wall clock time and date at job start Tue Mar 31 2020 18:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00486 * 2 1 4 4 N 1.46893 * 109.47101 * 124.62324 * 3 2 1 5 5 C 1.46898 * 111.00138 * 199.66761 * 4 3 2 6 6 C 1.50701 * 109.47128 * 66.04385 * 5 4 3 7 7 H 1.08001 * 120.00024 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00287 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99931 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00022 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.46828 * 60.00327 * 10 8 6 12 12 H 1.48496 * 109.46657 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46895 * 300.00303 * 10 8 6 14 14 C 1.46903 * 111.00130 * 75.71665 * 4 3 2 15 15 C 1.50698 * 109.47474 * 199.97370 * 14 4 3 16 16 O 1.21286 * 119.99750 * 355.78672 * 15 14 4 17 17 N 1.34772 * 120.00385 * 175.79171 * 15 14 4 18 18 N 1.40101 * 120.00129 * 180.02562 * 17 15 14 19 19 C 1.34777 * 119.99783 * 179.97438 * 18 17 15 20 20 O 1.21568 * 120.00053 * 359.97438 * 19 18 17 21 21 C 1.47722 * 119.99729 * 179.97438 * 19 18 17 22 22 C 1.39652 * 120.11961 * 0.31355 * 21 19 18 23 23 C 1.37844 * 119.88069 * 180.23552 * 22 21 19 24 24 C 1.38654 * 120.11483 * 359.46737 * 23 22 21 25 25 F 1.35099 * 119.87669 * 180.27812 * 24 23 22 26 26 C 1.38660 * 120.24384 * 0.25819 * 24 23 22 27 27 C 1.37841 * 120.11222 * 0.02562 * 26 24 23 28 28 H 1.08002 * 120.00306 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99460 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99460 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46714 * 4.62121 * 3 2 1 32 32 H 1.09002 * 109.46795 * 244.62459 * 3 2 1 33 33 H 1.08994 * 109.47343 * 186.04968 * 5 4 3 34 34 H 1.09004 * 109.46918 * 306.05028 * 5 4 3 35 35 H 0.96994 * 120.00325 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47110 * 79.96792 * 14 4 3 37 37 H 1.08997 * 109.46950 * 319.97297 * 14 4 3 38 38 H 0.97002 * 120.00071 * 359.97438 * 17 15 14 39 39 H 0.96992 * 119.99855 * 359.97438 * 18 17 15 40 40 H 1.07994 * 120.05935 * 359.97438 * 22 21 19 41 41 H 1.07995 * 119.94183 * 179.75125 * 23 22 21 42 42 H 1.07991 * 119.94413 * 180.02562 * 26 24 23 43 43 H 1.08007 * 120.05597 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9899 1.3356 1.1397 5 6 3.3900 2.7131 1.4561 6 6 2.1918 3.4840 1.9472 7 1 1.2294 2.9990 2.0176 8 6 2.3244 4.8082 2.3077 9 7 3.4964 5.3987 2.2224 10 14 0.8392 5.7635 2.9170 11 1 0.2983 5.1121 4.1369 12 1 1.2437 7.1561 3.2368 13 1 -0.2048 5.7818 1.8612 14 6 4.1650 0.4913 0.8858 15 6 4.8288 0.1476 2.1943 16 8 4.4144 0.6265 3.2287 17 7 5.8830 -0.6918 2.2152 18 7 6.4998 -1.0117 3.4318 19 6 7.5537 -1.8515 3.4526 20 8 7.9688 -2.3318 2.4158 21 6 8.2044 -2.1884 4.7353 22 6 7.7255 -1.6432 5.9285 23 6 8.3394 -1.9571 7.1221 24 6 9.4237 -2.8210 7.1406 25 9 10.0182 -3.1297 8.3138 26 6 9.8998 -3.3697 5.9595 27 6 9.2968 -3.0579 4.7598 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3582 2.1318 0.0828 32 1 2.6267 1.3994 -0.9285 33 1 4.1562 2.7000 2.2312 34 1 3.7873 3.1909 0.5605 35 1 3.5897 6.3302 2.4763 36 1 4.8691 1.0298 0.2515 37 1 3.8525 -0.4252 0.3852 38 1 6.2143 -1.0751 1.3879 39 1 6.1683 -0.6288 4.2589 40 1 6.8783 -0.9736 5.9156 41 1 7.9723 -1.5329 8.0449 42 1 10.7443 -4.0424 5.9796 43 1 9.6682 -3.4862 3.8404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292152835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:15 Heat of formation + Delta-G solvation = -17.950536 kcal Electronic energy + Delta-G solvation = -27424.098995 eV Core-core repulsion = 23193.406562 eV Total energy + Delta-G solvation = -4230.692433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.39294 -40.70873 -39.44445 -38.32694 -36.77802 -35.22745 -33.15960 -32.54289 -32.16769 -31.54526 -30.41260 -27.97161 -26.61746 -24.42594 -23.84173 -23.40881 -21.55702 -21.37300 -20.38182 -19.21223 -18.50357 -17.98953 -17.73282 -16.56938 -16.45820 -16.38408 -16.09205 -15.60628 -15.44347 -15.01363 -14.77318 -14.57163 -14.43160 -14.16327 -14.04551 -13.63818 -13.60367 -13.52557 -13.18157 -12.70211 -12.34854 -12.19072 -11.91372 -11.59810 -11.53588 -11.21789 -11.09475 -10.77732 -10.67245 -10.52718 -10.29362 -9.97981 -9.67738 -9.60488 -9.28897 -9.21628 -8.95078 -8.40963 -8.33078 -7.36397 -5.99848 -3.99771 0.20498 0.72184 1.73541 2.29862 2.68961 2.90701 3.31087 3.35396 3.39389 3.42983 3.68319 3.82057 4.17987 4.35270 4.35622 4.45397 4.69170 4.78731 4.95685 5.08391 5.28343 5.33202 5.37223 5.40660 5.48074 5.57020 5.63172 5.64153 5.65263 5.73695 6.01478 6.22448 6.27021 6.47129 6.61854 6.65445 6.98452 7.18223 7.23774 7.24662 7.53016 7.78906 7.80489 8.06955 8.13611 8.46165 8.55397 9.05864 9.63040 11.11442 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002380 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.913975 B =11761.468288 C =13192.625543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C 0.084 3.916 4 N -0.515 5.515 5 C 0.193 3.807 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.048 3.952 15 C 0.513 3.487 16 O -0.495 6.495 17 N -0.535 5.535 18 N -0.512 5.512 19 C 0.559 3.441 20 O -0.541 6.541 21 C -0.137 4.137 22 C -0.055 4.055 23 C -0.158 4.158 24 C 0.126 3.874 25 F -0.134 7.134 26 C -0.162 4.162 27 C -0.026 4.026 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.043 0.957 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.428 0.572 39 H 0.431 0.569 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.273 -17.866 3.368 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.154 4.154 3 C -0.043 4.043 4 N -0.239 5.239 5 C 0.069 3.931 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.086 4.086 15 C 0.299 3.701 16 O -0.365 6.365 17 N -0.288 5.288 18 N -0.258 5.258 19 C 0.346 3.654 20 O -0.418 6.418 21 C -0.142 4.142 22 C -0.073 4.073 23 C -0.176 4.176 24 C 0.106 3.894 25 F -0.112 7.112 26 C -0.181 4.181 27 C -0.045 4.045 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.269 0.731 39 H 0.274 0.726 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.075 -17.801 3.883 20.820 hybrid contribution -0.127 0.846 0.046 0.856 sum 9.948 -16.955 3.929 20.047 Atomic orbital electron populations 1.23717 0.95974 1.01321 1.02419 1.22965 0.95997 0.98281 0.98208 1.21235 0.95980 0.95959 0.91155 1.61825 1.11453 1.14326 1.36343 1.19860 0.97486 0.80376 0.95420 1.21048 0.95268 0.94675 1.43046 0.91904 1.24957 0.95991 0.97696 0.95906 1.69942 1.22919 1.12197 1.48860 0.86572 0.82775 0.78710 0.79424 1.20163 1.21425 1.20309 1.21787 0.94959 1.00118 0.91707 1.21320 0.78075 0.77337 0.93350 1.90787 1.61709 1.49988 1.33979 1.45238 1.32402 1.50582 1.00614 1.44654 1.30712 1.47486 1.02993 1.18135 0.79148 0.78701 0.89371 1.90797 1.64031 1.53503 1.33509 1.19717 0.99501 1.02715 0.92241 1.21289 0.98338 0.96818 0.90895 1.21131 0.96513 1.00008 0.99982 1.18009 0.93187 0.96768 0.81417 1.91536 1.82590 1.91395 1.45712 1.21154 1.02779 1.03199 0.90928 1.21113 0.92001 0.93108 0.98324 0.89236 0.88481 0.88445 0.88386 0.94905 0.93915 0.99286 0.92946 0.91729 0.88750 0.73054 0.72568 0.84147 0.83647 0.83757 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.81 14.32 29.01 0.42 -2.40 16 2 C -0.14 -2.07 9.32 -36.03 -0.34 -2.41 16 3 C 0.08 1.52 5.24 -4.98 -0.03 1.50 16 4 N -0.51 -10.64 4.00 -238.97 -0.96 -11.60 16 5 C 0.19 4.96 4.33 -4.98 -0.02 4.94 16 6 C -0.50 -14.09 8.23 -34.44 -0.28 -14.37 16 7 H 0.06 1.75 7.31 -52.49 -0.38 1.37 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.05 0.77 5.30 -4.98 -0.03 0.74 16 15 C 0.51 8.71 7.68 -10.99 -0.08 8.62 16 16 O -0.50 -10.61 14.90 5.55 0.08 -10.53 16 17 N -0.54 -7.26 6.26 31.22 0.20 -7.07 16 18 N -0.51 -6.43 6.21 30.50 0.19 -6.24 16 19 C 0.56 6.71 7.89 -12.39 -0.10 6.61 16 20 O -0.54 -7.72 16.18 5.31 0.09 -7.64 16 21 C -0.14 -1.31 5.87 -104.97 -0.62 -1.92 16 22 C -0.05 -0.44 9.54 -39.20 -0.37 -0.81 16 23 C -0.16 -1.18 10.01 -39.57 -0.40 -1.58 16 24 C 0.13 1.01 7.31 -39.27 -0.29 0.72 16 25 F -0.13 -1.16 17.26 2.25 0.04 -1.12 16 26 C -0.16 -1.16 10.01 -39.57 -0.40 -1.56 16 27 C -0.03 -0.22 9.59 -39.20 -0.38 -0.59 16 28 H 0.09 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.10 1.43 7.84 -52.49 -0.41 1.02 16 30 H 0.10 1.30 7.28 -52.49 -0.38 0.92 16 31 H 0.10 2.00 6.23 -51.93 -0.32 1.68 16 32 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 33 H 0.04 1.22 6.60 -51.93 -0.34 0.88 16 34 H -0.01 -0.28 8.12 -51.93 -0.42 -0.71 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.06 0.97 7.99 -51.93 -0.42 0.56 16 37 H 0.09 1.19 6.81 -51.93 -0.35 0.83 16 38 H 0.43 4.96 8.00 -182.59 -1.46 3.49 16 39 H 0.43 5.11 6.03 -182.60 -1.10 4.01 16 40 H 0.14 0.96 6.40 -52.49 -0.34 0.63 16 41 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.15 1.14 7.65 -52.48 -0.40 0.74 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -34.74 375.79 -9.14 -43.88 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.15 Total: 4.97 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -3.00 Total: -1.03 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.16 Total: -51.01 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.74 -9.14 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292152835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.930 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds