Wall clock time and date at job start Tue Mar 31 2020 18:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46496 * 119.99759 * 90.00349 * 4 3 2 6 6 C 1.50695 * 109.47390 * 89.99689 * 5 4 3 7 7 C 1.38219 * 120.01454 * 105.00148 * 6 5 4 8 8 C 1.38226 * 120.03060 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.04495 * 0.02562 * 8 7 6 10 10 C 1.38175 * 120.03013 * 359.97438 * 9 8 7 11 11 C 1.38437 * 120.01634 * 284.72505 * 6 5 4 12 12 F 1.35107 * 120.02466 * 359.97438 * 11 6 5 13 13 C 1.34771 * 120.00084 * 270.00021 * 4 3 2 14 14 O 1.21583 * 119.99981 * 180.02562 * 13 4 3 15 15 N 1.34776 * 119.99954 * 0.02562 * 13 4 3 16 16 C 1.46501 * 119.99941 * 180.02562 * 15 13 4 17 17 C 1.50698 * 109.47342 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99780 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00109 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99993 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99893 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99960 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99736 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47407 * 60.00402 * 24 22 20 26 26 H 1.48503 * 109.47068 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47204 * 299.99765 * 24 22 20 28 28 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 32 32 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 33 33 H 1.09001 * 109.47057 * 210.00204 * 5 4 3 34 34 H 1.08999 * 109.47333 * 329.99764 * 5 4 3 35 35 H 1.07999 * 119.98668 * 359.97438 * 7 6 5 36 36 H 1.07996 * 119.97626 * 179.97438 * 8 7 6 37 37 H 1.08006 * 119.98389 * 179.97438 * 9 8 7 38 38 H 1.08001 * 120.01003 * 179.97438 * 10 9 8 39 39 H 0.97000 * 120.00335 * 359.97438 * 15 13 4 40 40 H 1.09001 * 109.47019 * 300.00247 * 16 15 13 41 41 H 1.09000 * 109.47410 * 60.00065 * 16 15 13 42 42 H 0.96999 * 120.00168 * 0.02562 * 19 17 16 43 43 H 0.96996 * 120.00141 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2615 1.9480 0.5260 7 6 6.1419 2.5229 1.4231 8 6 6.9703 3.5520 1.0165 9 6 6.9189 4.0079 -0.2878 10 6 6.0396 3.4348 -1.1865 11 6 5.2133 2.3999 -0.7817 12 9 4.3575 1.8347 -1.6612 13 6 2.5936 1.8222 2.3214 14 8 3.3658 1.8449 3.2603 15 7 1.3375 2.2875 2.4705 16 6 0.9028 2.8210 3.7638 17 6 -0.5321 3.2710 3.6649 18 8 -1.1323 3.1576 2.6170 19 7 -1.1483 3.7993 4.7408 20 6 -2.4535 4.2092 4.6507 21 1 -2.9880 4.1082 3.7176 22 6 -3.0887 4.7544 5.7598 23 7 -2.4382 4.8777 6.8949 24 14 -4.8672 5.3121 5.6371 25 1 -5.7236 4.1575 5.2649 26 1 -5.3077 5.8535 6.9479 27 1 -4.9841 6.3695 4.6009 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 4.7141 0.4278 1.9201 34 1 4.3666 0.0352 0.2191 35 1 6.1826 2.1678 2.4423 36 1 7.6576 4.0008 1.7184 37 1 7.5664 4.8123 -0.6043 38 1 5.9994 3.7914 -2.2051 39 1 0.7216 2.2698 1.7214 40 1 0.9882 2.0448 4.5243 41 1 1.5316 3.6683 4.0373 42 1 -0.6682 3.8903 5.5787 43 1 -2.8817 5.2579 7.6692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358278028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:12 Heat of formation + Delta-G solvation = -54.446860 kcal Electronic energy + Delta-G solvation = -28534.102188 eV Core-core repulsion = 24301.827155 eV Total energy + Delta-G solvation = -4232.275032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.20170 -40.28118 -39.07807 -38.19576 -36.23046 -34.59269 -33.88535 -33.24490 -31.60128 -31.32626 -30.67575 -27.91880 -26.78523 -25.55442 -24.21359 -22.96974 -21.94354 -20.44588 -19.61158 -19.34311 -18.41348 -17.90546 -17.72154 -16.71057 -16.42848 -16.28562 -15.65602 -15.57884 -15.38184 -14.84306 -14.60467 -14.49851 -14.36894 -14.13698 -13.89352 -13.53656 -13.38683 -13.34940 -13.28634 -12.70825 -12.38385 -12.19802 -11.91857 -11.79782 -11.61909 -11.58305 -11.37683 -11.17643 -11.09533 -10.50063 -10.30526 -10.08964 -9.61246 -9.43512 -9.21275 -8.97537 -8.85783 -8.60441 -8.47882 -8.08467 -6.49999 -3.91948 0.87959 1.00260 2.14967 2.86696 3.14465 3.22075 3.25911 3.36737 3.45141 3.76949 4.01317 4.06864 4.23470 4.46272 4.51668 4.72433 4.83189 4.91744 4.97464 5.02057 5.05906 5.18738 5.26293 5.32373 5.48276 5.63769 5.68988 5.85816 5.88602 5.92728 5.93669 6.03076 6.10004 6.13500 6.21663 6.42439 6.58409 6.64689 6.67104 6.79473 7.06412 7.47027 7.93689 8.17841 8.46940 8.79935 9.05985 9.41143 9.89174 10.66934 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.002635 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.421726 B =10624.859282 C =11434.559954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.185 4.185 3 C 0.121 3.879 4 N -0.621 5.621 5 C 0.175 3.825 6 C -0.137 4.137 7 C -0.064 4.064 8 C -0.132 4.132 9 C -0.091 4.091 10 C -0.159 4.159 11 C 0.107 3.893 12 F -0.136 7.136 13 C 0.709 3.291 14 O -0.594 6.594 15 N -0.722 5.722 16 C 0.127 3.873 17 C 0.429 3.571 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.396 0.604 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.551 -6.205 -13.838 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C -0.001 4.001 4 N -0.357 5.357 5 C 0.052 3.948 6 C -0.139 4.139 7 C -0.083 4.083 8 C -0.151 4.151 9 C -0.109 4.109 10 C -0.178 4.178 11 C 0.088 3.912 12 F -0.114 7.114 13 C 0.411 3.589 14 O -0.473 6.473 15 N -0.381 5.381 16 C -0.001 4.001 17 C 0.215 3.785 18 O -0.484 6.484 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.122 0.878 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.760 3.240 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.246 0.754 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.565 -6.186 -13.642 23.084 hybrid contribution -1.125 0.316 0.004 1.168 sum 16.440 -5.870 -13.638 22.152 Atomic orbital electron populations 1.24004 0.95782 1.02672 0.97911 1.23235 0.96222 0.98654 1.02294 1.20973 0.92728 0.95730 0.90716 1.47058 1.11899 1.66673 1.10093 1.20080 0.79437 0.92324 1.02976 1.20418 0.99943 1.01317 0.92250 1.21111 0.93207 0.94601 0.99383 1.21263 1.00051 0.97498 0.96252 1.21032 0.97602 0.99093 0.93213 1.21111 0.98010 0.97279 1.01375 1.17573 0.91401 0.95148 0.87109 1.91381 1.67888 1.83897 1.68253 1.15786 0.82361 0.78175 0.82626 1.90867 1.54060 1.63164 1.39229 1.44932 1.12243 1.65902 1.14980 1.20793 0.94796 0.99467 0.85092 1.19756 0.87989 0.85201 0.85548 1.90480 1.66925 1.61577 1.29447 1.41774 1.12606 1.52841 1.11166 1.19675 0.87301 1.37617 0.98836 0.87756 1.25313 1.00524 0.97121 0.94728 1.69603 1.37966 1.44456 1.01510 0.85881 0.81575 0.79137 0.77419 1.19789 1.20862 1.19794 0.88255 0.87742 0.87304 0.90171 0.88052 0.88279 0.89534 0.84441 0.85287 0.85163 0.84877 0.75415 0.90037 0.90095 0.77032 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 14.32 29.01 0.42 -1.55 16 2 C -0.18 -2.10 9.85 -36.03 -0.35 -2.46 16 3 C 0.12 1.46 5.59 -5.19 -0.03 1.43 16 4 N -0.62 -8.41 2.44 -182.19 -0.44 -8.86 16 5 C 0.18 1.98 5.27 -5.20 -0.03 1.96 16 6 C -0.14 -1.53 5.47 -104.56 -0.57 -2.10 16 7 C -0.06 -0.68 9.67 -39.59 -0.38 -1.07 16 8 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 9 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 10 C -0.16 -1.47 10.03 -39.52 -0.40 -1.86 16 11 C 0.11 1.16 7.25 -39.42 -0.29 0.87 16 12 F -0.14 -1.47 13.84 2.25 0.03 -1.43 16 13 C 0.71 12.10 8.28 -86.92 -0.72 11.39 16 14 O -0.59 -11.43 15.92 5.29 0.08 -11.34 16 15 N -0.72 -12.94 5.39 -66.42 -0.36 -13.30 16 16 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 17 C 0.43 9.99 7.85 -10.99 -0.09 9.91 16 18 O -0.60 -15.34 15.24 5.55 0.08 -15.26 16 19 N -0.55 -13.73 5.29 -10.96 -0.06 -13.78 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 22 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 23 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 24 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H 0.10 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.10 1.35 7.84 -52.49 -0.41 0.94 16 30 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.08 1.05 6.02 -51.93 -0.31 0.74 16 32 H 0.10 1.11 4.95 -51.93 -0.26 0.85 16 33 H 0.10 1.16 7.23 -51.93 -0.38 0.78 16 34 H 0.09 0.80 8.00 -51.93 -0.42 0.38 16 35 H 0.14 1.45 8.00 -52.49 -0.42 1.03 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.41 7.26 5.17 -40.82 -0.21 7.05 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -31.55 374.19 -8.02 -39.57 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -5.20 Total: 18.15 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -3.51 Total: 8.30 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.14 Total: -59.22 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.17 Total: -26.60 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.03 Total: -1.43 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.55 -8.02 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.874 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds