Wall clock time and date at job start Tue Mar 31 2020 18:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46496 * 119.99759 * 90.00349 * 4 3 2 6 6 C 1.50695 * 109.47390 * 89.99689 * 5 4 3 7 7 C 1.38219 * 120.01454 * 105.00148 * 6 5 4 8 8 C 1.38226 * 120.03060 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.04495 * 0.02562 * 8 7 6 10 10 C 1.38175 * 120.03013 * 359.97438 * 9 8 7 11 11 C 1.38437 * 120.01634 * 284.72505 * 6 5 4 12 12 F 1.35107 * 120.02466 * 359.97438 * 11 6 5 13 13 C 1.34771 * 120.00084 * 270.00021 * 4 3 2 14 14 O 1.21583 * 119.99981 * 180.02562 * 13 4 3 15 15 N 1.34776 * 119.99954 * 0.02562 * 13 4 3 16 16 C 1.46501 * 119.99941 * 180.02562 * 15 13 4 17 17 C 1.50698 * 109.47342 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99780 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00109 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99993 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99893 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99960 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99736 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47407 * 60.00402 * 24 22 20 26 26 H 1.48503 * 109.47068 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47204 * 299.99765 * 24 22 20 28 28 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 32 32 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 33 33 H 1.09001 * 109.47057 * 210.00204 * 5 4 3 34 34 H 1.08999 * 109.47333 * 329.99764 * 5 4 3 35 35 H 1.07999 * 119.98668 * 359.97438 * 7 6 5 36 36 H 1.07996 * 119.97626 * 179.97438 * 8 7 6 37 37 H 1.08006 * 119.98389 * 179.97438 * 9 8 7 38 38 H 1.08001 * 120.01003 * 179.97438 * 10 9 8 39 39 H 0.97000 * 120.00335 * 359.97438 * 15 13 4 40 40 H 1.09001 * 109.47019 * 300.00247 * 16 15 13 41 41 H 1.09000 * 109.47410 * 60.00065 * 16 15 13 42 42 H 0.96999 * 120.00168 * 0.02562 * 19 17 16 43 43 H 0.96996 * 120.00141 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2615 1.9480 0.5260 7 6 6.1419 2.5229 1.4231 8 6 6.9703 3.5520 1.0165 9 6 6.9189 4.0079 -0.2878 10 6 6.0396 3.4348 -1.1865 11 6 5.2133 2.3999 -0.7817 12 9 4.3575 1.8347 -1.6612 13 6 2.5936 1.8222 2.3214 14 8 3.3658 1.8449 3.2603 15 7 1.3375 2.2875 2.4705 16 6 0.9028 2.8210 3.7638 17 6 -0.5321 3.2710 3.6649 18 8 -1.1323 3.1576 2.6170 19 7 -1.1483 3.7993 4.7408 20 6 -2.4535 4.2092 4.6507 21 1 -2.9880 4.1082 3.7176 22 6 -3.0887 4.7544 5.7598 23 7 -2.4382 4.8777 6.8949 24 14 -4.8672 5.3121 5.6371 25 1 -5.7236 4.1575 5.2649 26 1 -5.3077 5.8535 6.9479 27 1 -4.9841 6.3695 4.6009 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 4.7141 0.4278 1.9201 34 1 4.3666 0.0352 0.2191 35 1 6.1826 2.1678 2.4423 36 1 7.6576 4.0008 1.7184 37 1 7.5664 4.8123 -0.6043 38 1 5.9994 3.7914 -2.2051 39 1 0.7216 2.2698 1.7214 40 1 0.9882 2.0448 4.5243 41 1 1.5316 3.6683 4.0373 42 1 -0.6682 3.8903 5.5787 43 1 -2.8817 5.2579 7.6692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358278028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:11 Heat of formation + Delta-G solvation = -73.379241 kcal Electronic energy + Delta-G solvation = -28534.923157 eV Core-core repulsion = 24301.827155 eV Total energy + Delta-G solvation = -4233.096002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.99979 -41.54485 -40.22128 -39.71394 -37.38691 -36.29191 -35.46641 -34.37152 -33.37776 -32.46201 -31.41592 -29.41485 -27.78450 -26.95469 -25.82596 -23.71362 -22.80871 -21.58306 -21.38645 -20.47715 -20.12740 -19.39400 -18.57609 -17.79320 -17.45555 -17.29040 -17.19617 -16.67878 -16.58663 -16.43785 -15.93173 -15.84934 -15.72334 -15.20939 -15.13006 -14.98862 -14.60073 -14.22648 -14.18989 -13.94942 -13.64634 -13.53747 -13.47075 -13.13683 -12.89920 -12.65122 -12.47081 -12.46586 -12.31411 -12.13687 -11.95890 -11.56198 -11.43771 -10.55666 -10.43032 -10.28504 -10.09637 -9.97433 -9.75498 -9.56919 -8.50682 -6.00886 0.12077 0.26383 1.17457 1.37933 1.42436 1.53132 1.69852 1.89258 2.06486 2.28164 2.64141 2.92134 3.16299 3.16447 3.26019 3.66300 3.75372 3.89449 4.02720 4.03106 4.19123 4.26000 4.37060 4.38510 4.41633 4.44186 4.52475 4.60818 4.71920 4.93013 5.00163 5.11981 5.18807 5.29690 5.35549 5.38534 5.40804 5.49424 5.64062 5.66302 5.88674 5.92173 5.95767 6.48118 6.83937 7.03412 7.40387 7.48158 7.94316 8.66121 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.002635 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.421726 B =10624.859282 C =11434.559954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.180 4.180 3 C 0.122 3.878 4 N -0.613 5.613 5 C 0.173 3.827 6 C -0.152 4.152 7 C -0.081 4.081 8 C -0.135 4.135 9 C -0.087 4.087 10 C -0.163 4.163 11 C 0.092 3.908 12 F -0.139 7.139 13 C 0.707 3.293 14 O -0.618 6.618 15 N -0.726 5.726 16 C 0.140 3.860 17 C 0.434 3.566 18 O -0.622 6.622 19 N -0.558 5.558 20 C -0.337 4.337 21 H 0.086 0.914 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 0.996 3.004 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.152 0.848 39 H 0.407 0.593 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.399 0.601 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.374 -5.966 -14.641 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.199 4.199 3 C -0.001 4.001 4 N -0.348 5.348 5 C 0.051 3.949 6 C -0.154 4.154 7 C -0.100 4.100 8 C -0.152 4.152 9 C -0.105 4.105 10 C -0.181 4.181 11 C 0.072 3.928 12 F -0.118 7.118 13 C 0.408 3.592 14 O -0.499 6.499 15 N -0.385 5.385 16 C 0.012 3.988 17 C 0.220 3.780 18 O -0.510 6.510 19 N -0.193 5.193 20 C -0.467 4.467 21 H 0.104 0.896 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.819 3.181 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.195 1.195 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.144 0.856 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.170 0.830 39 H 0.246 0.754 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.233 0.767 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.420 -5.965 -14.469 24.171 hybrid contribution -1.276 0.242 0.196 1.314 sum 17.144 -5.723 -14.273 23.030 Atomic orbital electron populations 1.24052 0.96091 1.02633 0.98438 1.23297 0.96049 0.98857 1.01720 1.21048 0.92531 0.95805 0.90666 1.47112 1.12944 1.65542 1.09163 1.20251 0.78195 0.93105 1.03398 1.20406 1.00491 1.01741 0.92777 1.21207 0.94047 0.95558 0.99163 1.21565 0.99755 0.96771 0.97158 1.21416 0.97262 0.99230 0.92604 1.21435 0.97501 0.96604 1.02568 1.17755 0.92064 0.95965 0.86991 1.91358 1.68096 1.84068 1.68255 1.15901 0.81700 0.78172 0.83428 1.90846 1.54478 1.64208 1.40380 1.44910 1.12800 1.66367 1.14393 1.20604 0.91936 1.00093 0.86210 1.20372 0.89261 0.83714 0.84604 1.90459 1.68083 1.62181 1.30318 1.41813 1.12295 1.53497 1.11733 1.19702 0.88521 1.39630 0.98800 0.89561 1.26119 1.04359 0.96507 0.94068 1.69671 1.39469 1.44501 1.01969 0.84939 0.76612 0.78673 0.77838 1.19474 1.19599 1.19485 0.86873 0.89337 0.85583 0.91481 0.86616 0.88935 0.87320 0.85137 0.83256 0.82151 0.82998 0.75406 0.89034 0.89143 0.76719 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 14.32 67.78 0.97 -3.08 16 2 C -0.18 -3.92 9.85 25.65 0.25 -3.67 16 3 C 0.12 2.85 5.59 85.63 0.48 3.33 16 4 N -0.61 -16.25 2.44 -848.58 -2.07 -18.32 16 5 C 0.17 3.79 5.27 85.63 0.45 4.24 16 6 C -0.15 -3.29 5.47 -19.82 -0.11 -3.40 16 7 C -0.08 -1.68 9.67 22.26 0.22 -1.46 16 8 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 9 C -0.09 -1.22 10.04 22.26 0.22 -1.00 16 10 C -0.16 -2.66 10.03 22.31 0.22 -2.43 16 11 C 0.09 1.86 7.25 22.37 0.16 2.02 16 12 F -0.14 -2.83 13.84 44.97 0.62 -2.20 16 13 C 0.71 23.97 8.28 179.06 1.48 25.46 16 14 O -0.62 -23.71 15.92 -3.98 -0.06 -23.77 16 15 N -0.73 -26.05 5.39 -482.30 -2.60 -28.65 16 16 C 0.14 5.39 6.15 85.63 0.53 5.92 16 17 C 0.43 20.45 7.85 87.66 0.69 21.13 16 18 O -0.62 -32.55 15.24 -3.07 -0.05 -32.60 16 19 N -0.56 -28.35 5.29 -306.97 -1.62 -29.97 16 20 C -0.34 -18.68 9.68 84.04 0.81 -17.87 16 21 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 22 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 23 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 24 Si 1.00 41.87 29.55 68.60 2.03 43.90 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H 0.11 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.09 2.34 7.84 -2.91 -0.02 2.32 16 30 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.07 1.77 6.02 -2.38 -0.01 1.75 16 32 H 0.12 2.40 4.95 -2.39 -0.01 2.39 16 33 H 0.09 2.15 7.23 -2.39 -0.02 2.13 16 34 H 0.11 1.85 8.00 -2.39 -0.02 1.83 16 35 H 0.13 2.79 8.00 -2.91 -0.02 2.77 16 36 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.41 14.68 5.17 -92.71 -0.48 14.20 16 40 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 43 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -67.14 374.19 3.45 -63.69 By element: Atomic # 1 Polarization: 49.48 SS G_CDS: -0.15 Total: 49.34 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 7.07 Total: 27.20 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -6.01 Total: -125.56 kcal Atomic # 8 Polarization: -56.26 SS G_CDS: -0.11 Total: -56.37 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.62 Total: -2.20 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -67.14 3.45 -63.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.687 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds