Wall clock time and date at job start Tue Mar 31 2020 19:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.56534 * 2 1 4 4 C 1.50442 * 109.66582 * 120.29896 * 2 1 3 5 5 O 1.21283 * 118.48436 * 287.17374 * 4 2 1 6 6 N 1.33380 * 123.01969 * 107.16935 * 4 2 1 7 7 C 1.46500 * 117.70267 * 184.34150 * 6 4 2 8 8 C 1.45649 * 124.59351 * 4.32541 * 6 4 2 9 9 C 1.52995 * 110.76788 * 338.09437 * 8 6 4 10 10 N 1.47052 * 109.56340 * 239.76520 * 2 1 3 11 11 C 1.34778 * 121.34966 * 102.77862 * 10 2 1 12 12 O 1.21367 * 119.99796 * 173.26586 * 11 10 2 13 13 C 1.49304 * 120.00275 * 353.25870 * 11 10 2 14 14 O 1.21409 * 120.00185 * 353.65915 * 13 11 10 15 15 N 1.34777 * 119.99995 * 173.65505 * 13 11 10 16 16 C 1.40294 * 120.00005 * 180.02562 * 15 13 11 17 17 C 1.40728 * 126.09831 * 359.68819 * 16 15 13 18 18 N 1.30876 * 108.37164 * 179.81909 * 17 16 15 19 19 N 1.40056 * 108.43851 * 0.44409 * 18 17 16 20 20 C 1.37300 * 126.05437 * 179.72300 * 19 18 17 21 21 H 1.08002 * 119.99488 * 179.97438 * 20 19 18 22 22 C 1.39002 * 120.00280 * 359.97438 * 20 19 18 23 23 N 1.31283 * 119.99728 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00208 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47086 * 90.00363 * 24 22 20 26 26 H 1.48492 * 109.47254 * 210.00404 * 24 22 20 27 27 H 1.48498 * 109.47146 * 330.00464 * 24 22 20 28 28 C 1.35786 * 126.10222 * 180.02562 * 16 15 13 29 29 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46837 * 299.99364 * 1 2 3 31 31 H 1.08996 * 109.47319 * 59.99595 * 1 2 3 32 32 H 1.09003 * 109.46926 * 269.98481 * 7 6 4 33 33 H 1.08999 * 109.47031 * 29.97734 * 7 6 4 34 34 H 1.08991 * 109.47282 * 149.98468 * 7 6 4 35 35 H 1.08993 * 109.21437 * 217.76298 * 8 6 4 36 36 H 1.08999 * 109.18394 * 98.40119 * 8 6 4 37 37 H 1.08997 * 109.71957 * 287.05267 * 9 8 6 38 38 H 1.09006 * 109.71375 * 166.40305 * 9 8 6 39 39 H 0.96991 * 119.99963 * 0.02562 * 15 13 11 40 40 H 1.08000 * 125.81564 * 0.02562 * 17 16 15 41 41 H 0.97001 * 119.99761 * 179.97438 * 23 22 20 42 42 H 1.08005 * 126.24776 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0270 0.0000 4 6 2.0363 -0.7147 1.2232 5 8 1.9346 -0.1636 2.2987 6 7 2.5918 -1.9266 1.1791 7 6 2.9561 -2.5554 2.4511 8 6 2.8613 -2.6687 -0.0448 9 6 1.9755 -2.1696 -1.1881 10 7 2.0224 -0.6977 -1.1971 11 6 2.4971 -0.0177 -2.2596 12 8 3.0094 -0.6156 -3.1832 13 6 2.3926 1.4711 -2.3004 14 8 1.7794 2.0606 -1.4341 15 7 2.9792 2.1607 -3.2989 16 6 2.8814 3.5597 -3.3369 17 6 2.2014 4.3690 -2.4079 18 7 2.3359 5.6185 -2.7730 19 7 3.0947 5.6570 -3.9496 20 6 3.4478 6.7858 -4.6469 21 1 4.0387 6.7017 -5.5470 22 6 3.0447 8.0368 -4.1945 23 7 2.3268 8.1390 -3.1001 24 14 3.5245 9.5725 -5.1436 25 1 2.4797 9.8765 -6.1541 26 1 3.6519 10.7154 -4.2041 27 1 4.8233 9.3465 -5.8270 28 6 3.4207 4.3741 -4.2802 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9787 -2.2823 2.7117 33 1 2.2783 -2.2130 3.2330 34 1 2.8826 -3.6386 2.3551 35 1 2.6638 -3.7268 0.1264 36 1 3.9082 -2.5389 -0.3192 37 1 0.9499 -2.5039 -1.0316 38 1 2.3479 -2.5553 -2.1371 39 1 3.4688 1.6898 -3.9911 40 1 1.6632 4.0188 -1.5395 41 1 2.0458 9.0120 -2.7841 42 1 4.0020 4.0630 -5.1357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784784610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:18 Heat of formation + Delta-G solvation = 16.029110 kcal Electronic energy + Delta-G solvation = -29048.117823 eV Core-core repulsion = 24838.818820 eV Total energy + Delta-G solvation = -4209.299003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36865 -40.18550 -39.42533 -38.10009 -36.76235 -35.73053 -34.29271 -33.22109 -31.50795 -30.37730 -29.97954 -28.10239 -27.31321 -25.81224 -24.71822 -23.89271 -22.92904 -21.13354 -20.40736 -19.56611 -18.81672 -17.96476 -17.50567 -17.42844 -16.55360 -16.30722 -16.00069 -15.66641 -15.53954 -15.13862 -14.94310 -14.39498 -14.22284 -14.13536 -13.70641 -13.49052 -13.24434 -13.13700 -13.02985 -12.84103 -12.60334 -12.29127 -12.22092 -11.96250 -11.79801 -11.74597 -11.46598 -11.31591 -11.08244 -10.92505 -10.57426 -10.40636 -10.24761 -9.27622 -9.15254 -9.02656 -8.96043 -8.88784 -8.16760 -6.83582 -6.63232 -4.31052 1.46902 2.17694 2.39580 2.69010 2.90631 3.02137 3.07402 3.20070 3.47629 3.64063 3.79821 4.10643 4.30493 4.31727 4.45265 4.66918 4.77886 4.88294 4.95466 4.97622 4.98621 5.15169 5.20445 5.27551 5.39588 5.53361 5.54963 5.69161 5.94517 6.07752 6.09223 6.16450 6.30533 6.66983 6.79973 6.84939 6.92454 7.09391 7.12858 7.52903 7.77253 7.88374 7.99100 8.13457 8.39596 8.64123 9.27255 9.56017 10.32383 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.002529 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.995677 B =11067.691023 C =11684.725716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.106 3.894 3 H 0.170 0.830 4 C 0.513 3.487 5 O -0.536 6.536 6 N -0.611 5.611 7 C 0.077 3.923 8 C 0.101 3.899 9 C 0.093 3.907 10 N -0.592 5.592 11 C 0.524 3.476 12 O -0.522 6.522 13 C 0.482 3.518 14 O -0.514 6.514 15 N -0.576 5.576 16 C -0.073 4.073 17 C -0.023 4.023 18 N -0.260 5.260 19 N -0.137 5.137 20 C -0.321 4.321 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.766 5.766 24 Si 0.936 3.064 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.263 1.263 28 C -0.077 4.077 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.409 0.591 40 H 0.179 0.821 41 H 0.276 0.724 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 -20.685 3.632 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.001 3.999 3 H 0.187 0.813 4 C 0.300 3.700 5 O -0.412 6.412 6 N -0.345 5.345 7 C -0.066 4.066 8 C -0.023 4.023 9 C -0.029 4.029 10 N -0.328 5.328 11 C 0.308 3.692 12 O -0.397 6.397 13 C 0.263 3.737 14 O -0.393 6.393 15 N -0.218 5.218 16 C -0.179 4.179 17 C -0.199 4.199 18 N -0.091 5.091 19 N 0.097 4.903 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.392 5.392 24 Si 0.760 3.240 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.187 1.187 28 C -0.228 4.228 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.245 0.755 40 H 0.196 0.804 41 H 0.087 0.913 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.606 -18.878 4.706 19.465 hybrid contribution 0.742 -0.727 -1.035 1.466 sum 0.136 -19.605 3.670 19.946 Atomic orbital electron populations 1.21909 0.91638 1.02012 1.04586 1.22427 0.97369 1.00511 0.79583 0.81320 1.20487 0.77273 0.80887 0.91340 1.90747 1.56493 1.64241 1.29687 1.47228 1.61652 1.17769 1.07810 1.21743 1.01362 0.97302 0.86163 1.21803 1.00344 0.96334 0.83789 1.22056 1.00870 0.79672 1.00318 1.48105 1.61977 1.06516 1.16217 1.20295 0.78025 0.88880 0.82003 1.90733 1.42387 1.70443 1.36144 1.19538 0.83129 0.87099 0.83935 1.90508 1.42364 1.69260 1.37122 1.42137 1.49097 1.05492 1.25079 1.17237 1.16176 0.80689 1.03788 1.24169 1.04141 0.90149 1.01451 1.78281 1.15316 1.16713 0.98768 1.44580 1.28050 1.03274 1.14421 1.19934 1.34961 0.82089 1.08396 0.86406 1.25672 0.95428 0.99921 0.96130 1.70204 1.25778 1.25659 1.17547 0.85798 0.79496 0.79576 0.79143 1.19508 1.20014 1.18734 1.21300 1.12664 0.85289 1.03588 0.92851 0.90130 0.90234 0.92560 0.90208 0.91197 0.89136 0.90992 0.89740 0.86686 0.75546 0.80441 0.91286 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.26 37.16 0.34 -1.29 16 2 C 0.11 1.39 2.44 -68.91 -0.17 1.22 16 3 H 0.17 2.69 4.91 -52.27 -0.26 2.43 16 4 C 0.51 6.79 6.84 -11.73 -0.08 6.71 16 5 O -0.54 -8.87 16.25 5.55 0.09 -8.78 16 6 N -0.61 -6.04 3.20 -182.78 -0.59 -6.63 16 7 C 0.08 0.61 10.19 59.85 0.61 1.22 16 8 C 0.10 0.70 6.58 -4.50 -0.03 0.67 16 9 C 0.09 0.75 6.39 -3.63 -0.02 0.73 16 10 N -0.59 -7.04 2.62 -167.10 -0.44 -7.48 16 11 C 0.52 7.53 7.76 -11.65 -0.09 7.44 16 12 O -0.52 -7.86 16.00 5.48 0.09 -7.77 16 13 C 0.48 8.26 7.70 -11.65 -0.09 8.17 16 14 O -0.51 -9.66 10.25 5.45 0.06 -9.61 16 15 N -0.58 -10.36 5.45 -10.45 -0.06 -10.41 16 16 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 17 C -0.02 -0.59 10.85 -17.02 -0.18 -0.77 16 18 N -0.26 -7.33 10.39 30.81 0.32 -7.01 16 19 N -0.14 -3.65 3.73 -11.40 -0.04 -3.70 16 20 C -0.32 -8.28 10.25 -14.82 -0.15 -8.43 16 21 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 23 N -0.77 -20.90 11.81 55.50 0.66 -20.25 16 24 Si 0.94 18.50 29.55 -169.99 -5.02 13.48 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 28 C -0.08 -1.76 11.50 -16.38 -0.19 -1.95 16 29 H 0.05 0.50 7.50 -51.93 -0.39 0.11 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.74 7.23 -51.93 -0.38 0.37 16 34 H 0.07 0.34 7.80 -51.93 -0.41 -0.07 16 35 H 0.09 0.34 7.84 -51.93 -0.41 -0.06 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.55 7.51 -51.93 -0.39 0.16 16 38 H 0.11 0.88 7.09 -51.93 -0.37 0.51 16 39 H 0.41 6.29 8.31 -40.82 -0.34 5.96 16 40 H 0.18 4.31 5.92 -52.49 -0.31 4.00 16 41 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.15 2.84 8.06 -52.48 -0.42 2.42 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -33.59 353.53 -5.24 -38.83 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.90 Total: 11.43 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -0.73 Total: 12.58 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.15 Total: -55.47 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.23 Total: -26.16 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.59 -5.24 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784784610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.856 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds