Wall clock time and date at job start Tue Mar 31 2020 19:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.56534 * 2 1 4 4 C 1.50442 * 109.66582 * 120.29896 * 2 1 3 5 5 O 1.21283 * 118.48436 * 287.17374 * 4 2 1 6 6 N 1.33380 * 123.01969 * 107.16935 * 4 2 1 7 7 C 1.46500 * 117.70267 * 184.34150 * 6 4 2 8 8 C 1.45649 * 124.59351 * 4.32541 * 6 4 2 9 9 C 1.52995 * 110.76788 * 338.09437 * 8 6 4 10 10 N 1.47052 * 109.56340 * 239.76520 * 2 1 3 11 11 C 1.34778 * 121.34966 * 102.77862 * 10 2 1 12 12 O 1.21367 * 119.99796 * 173.26586 * 11 10 2 13 13 C 1.49304 * 120.00275 * 353.25870 * 11 10 2 14 14 O 1.21409 * 120.00185 * 353.65915 * 13 11 10 15 15 N 1.34777 * 119.99995 * 173.65505 * 13 11 10 16 16 C 1.40294 * 120.00005 * 180.02562 * 15 13 11 17 17 C 1.40728 * 126.09831 * 359.68819 * 16 15 13 18 18 N 1.30876 * 108.37164 * 179.81909 * 17 16 15 19 19 N 1.40056 * 108.43851 * 0.44409 * 18 17 16 20 20 C 1.37300 * 126.05437 * 179.72300 * 19 18 17 21 21 H 1.08002 * 119.99488 * 179.97438 * 20 19 18 22 22 C 1.39002 * 120.00280 * 359.97438 * 20 19 18 23 23 N 1.31283 * 119.99728 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00208 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47086 * 90.00363 * 24 22 20 26 26 H 1.48492 * 109.47254 * 210.00404 * 24 22 20 27 27 H 1.48498 * 109.47146 * 330.00464 * 24 22 20 28 28 C 1.35786 * 126.10222 * 180.02562 * 16 15 13 29 29 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46837 * 299.99364 * 1 2 3 31 31 H 1.08996 * 109.47319 * 59.99595 * 1 2 3 32 32 H 1.09003 * 109.46926 * 269.98481 * 7 6 4 33 33 H 1.08999 * 109.47031 * 29.97734 * 7 6 4 34 34 H 1.08991 * 109.47282 * 149.98468 * 7 6 4 35 35 H 1.08993 * 109.21437 * 217.76298 * 8 6 4 36 36 H 1.08999 * 109.18394 * 98.40119 * 8 6 4 37 37 H 1.08997 * 109.71957 * 287.05267 * 9 8 6 38 38 H 1.09006 * 109.71375 * 166.40305 * 9 8 6 39 39 H 0.96991 * 119.99963 * 0.02562 * 15 13 11 40 40 H 1.08000 * 125.81564 * 0.02562 * 17 16 15 41 41 H 0.97001 * 119.99761 * 179.97438 * 23 22 20 42 42 H 1.08005 * 126.24776 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0270 0.0000 4 6 2.0363 -0.7147 1.2232 5 8 1.9346 -0.1636 2.2987 6 7 2.5918 -1.9266 1.1791 7 6 2.9561 -2.5554 2.4511 8 6 2.8613 -2.6687 -0.0448 9 6 1.9755 -2.1696 -1.1881 10 7 2.0224 -0.6977 -1.1971 11 6 2.4971 -0.0177 -2.2596 12 8 3.0094 -0.6156 -3.1832 13 6 2.3926 1.4711 -2.3004 14 8 1.7794 2.0606 -1.4341 15 7 2.9792 2.1607 -3.2989 16 6 2.8814 3.5597 -3.3369 17 6 2.2014 4.3690 -2.4079 18 7 2.3359 5.6185 -2.7730 19 7 3.0947 5.6570 -3.9496 20 6 3.4478 6.7858 -4.6469 21 1 4.0387 6.7017 -5.5470 22 6 3.0447 8.0368 -4.1945 23 7 2.3268 8.1390 -3.1001 24 14 3.5245 9.5725 -5.1436 25 1 2.4797 9.8765 -6.1541 26 1 3.6519 10.7154 -4.2041 27 1 4.8233 9.3465 -5.8270 28 6 3.4207 4.3741 -4.2802 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9787 -2.2823 2.7117 33 1 2.2783 -2.2130 3.2330 34 1 2.8826 -3.6386 2.3551 35 1 2.6638 -3.7268 0.1264 36 1 3.9082 -2.5389 -0.3192 37 1 0.9499 -2.5039 -1.0316 38 1 2.3479 -2.5553 -2.1371 39 1 3.4688 1.6898 -3.9911 40 1 1.6632 4.0188 -1.5395 41 1 2.0458 9.0120 -2.7841 42 1 4.0020 4.0630 -5.1357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784784610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:17 Heat of formation + Delta-G solvation = -9.246018 kcal Electronic energy + Delta-G solvation = -29049.213835 eV Core-core repulsion = 24838.818820 eV Total energy + Delta-G solvation = -4210.395015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49277 -41.68020 -40.86168 -39.48335 -37.81026 -36.73108 -35.84243 -34.97067 -32.42109 -32.29257 -30.88462 -29.85009 -28.11615 -27.31868 -26.13000 -24.78549 -24.09750 -22.90498 -21.72454 -21.28493 -20.03875 -19.34380 -18.77990 -18.44616 -17.56271 -17.50693 -17.32477 -17.13341 -16.87685 -16.59135 -15.97481 -15.71511 -15.58845 -15.41495 -15.02881 -14.90858 -14.81633 -14.36872 -13.80880 -13.76473 -13.51362 -13.41103 -13.40358 -13.13249 -13.09483 -13.02349 -12.92364 -12.72360 -12.42608 -12.22669 -12.08949 -11.91759 -11.41916 -11.06759 -10.85980 -10.34089 -10.14070 -10.05349 -9.83258 -8.62616 -8.48751 -6.26576 0.18495 1.07680 1.28820 1.37605 1.41203 1.58472 1.69831 1.84059 1.99252 2.08919 2.28472 2.50689 2.79206 3.07923 3.26688 3.34623 3.68167 3.98896 4.05800 4.10664 4.33608 4.39721 4.44142 4.52541 4.57312 4.58866 4.65863 4.72539 4.83750 4.92600 4.94613 4.97608 5.00906 5.12396 5.25068 5.32272 5.34800 5.70647 5.91569 6.15219 6.22971 6.34519 6.61614 6.70427 6.92346 7.03600 7.41401 7.63326 8.50290 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.002529 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.995677 B =11067.691023 C =11684.725716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.107 3.893 3 H 0.137 0.863 4 C 0.510 3.490 5 O -0.580 6.580 6 N -0.604 5.604 7 C 0.074 3.926 8 C 0.098 3.902 9 C 0.087 3.913 10 N -0.582 5.582 11 C 0.534 3.466 12 O -0.525 6.525 13 C 0.480 3.520 14 O -0.530 6.530 15 N -0.577 5.577 16 C -0.056 4.056 17 C -0.046 4.046 18 N -0.309 5.309 19 N -0.163 5.163 20 C -0.353 4.353 21 H 0.142 0.858 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.019 2.981 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.245 1.245 28 C -0.074 4.074 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.424 0.576 40 H 0.176 0.824 41 H 0.277 0.723 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.914 -23.816 2.221 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.001 3.999 3 H 0.154 0.846 4 C 0.297 3.703 5 O -0.460 6.460 6 N -0.336 5.336 7 C -0.068 4.068 8 C -0.024 4.024 9 C -0.033 4.033 10 N -0.317 5.317 11 C 0.316 3.684 12 O -0.401 6.401 13 C 0.263 3.737 14 O -0.409 6.409 15 N -0.222 5.222 16 C -0.163 4.163 17 C -0.221 4.221 18 N -0.140 5.140 19 N 0.069 4.931 20 C -0.484 4.484 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.449 5.449 24 Si 0.838 3.162 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.168 1.168 28 C -0.225 4.225 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.144 0.856 39 H 0.262 0.738 40 H 0.193 0.807 41 H 0.087 0.913 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.346 -22.118 3.279 22.363 hybrid contribution 0.447 -0.041 -0.503 0.674 sum 0.792 -22.159 2.776 22.347 Atomic orbital electron populations 1.21839 0.90455 1.03499 1.03644 1.22168 0.98284 0.99168 0.80272 0.84635 1.20414 0.77602 0.81872 0.90417 1.90728 1.58664 1.65645 1.30962 1.47346 1.59772 1.16687 1.09763 1.21910 1.00634 0.99513 0.84757 1.22093 1.00146 0.98254 0.81910 1.22476 1.02862 0.76463 1.01508 1.48122 1.60511 1.08320 1.14739 1.19567 0.78799 0.87150 0.82851 1.90742 1.42993 1.69910 1.36461 1.20275 0.81764 0.88789 0.82897 1.90537 1.42487 1.70362 1.37517 1.42067 1.50181 1.03743 1.26204 1.17254 1.14123 0.82648 1.02253 1.24265 1.05240 0.90328 1.02303 1.78172 1.17041 1.18356 1.00462 1.44842 1.29034 1.04710 1.14547 1.20647 1.35828 0.82510 1.09384 0.84063 1.26876 0.94693 1.03375 0.96790 1.70379 1.28002 1.26490 1.19981 0.84592 0.79849 0.74393 0.77399 1.18852 1.20235 1.16761 1.22014 1.11859 0.84237 1.04348 0.90079 0.91008 0.91248 0.92747 0.92014 0.86989 0.84457 0.90821 0.87290 0.85587 0.73838 0.80712 0.91283 0.79442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.26 71.98 0.67 -2.37 16 2 C 0.11 2.76 2.44 44.06 0.11 2.86 16 3 H 0.14 4.51 4.91 -7.71 -0.04 4.48 16 4 C 0.51 13.14 6.84 87.79 0.60 13.74 16 5 O -0.58 -19.66 16.25 -3.04 -0.05 -19.71 16 6 N -0.60 -10.33 3.20 -851.35 -2.73 -13.06 16 7 C 0.07 0.98 10.19 127.77 1.30 2.28 16 8 C 0.10 0.93 6.58 86.54 0.57 1.50 16 9 C 0.09 1.06 6.39 86.23 0.55 1.61 16 10 N -0.58 -12.70 2.62 -800.94 -2.10 -14.80 16 11 C 0.53 14.52 7.76 87.22 0.68 15.20 16 12 O -0.52 -14.52 16.00 -3.30 -0.05 -14.57 16 13 C 0.48 16.44 7.70 87.22 0.67 17.11 16 14 O -0.53 -20.63 10.25 -3.43 -0.04 -20.67 16 15 N -0.58 -20.46 5.45 -305.32 -1.66 -22.12 16 16 C -0.06 -2.54 6.90 37.83 0.26 -2.28 16 17 C -0.05 -2.41 10.85 85.44 0.93 -1.48 16 18 N -0.31 -18.23 10.39 -56.43 -0.59 -18.82 16 19 N -0.16 -8.93 3.73 -189.98 -0.71 -9.63 16 20 C -0.35 -18.38 10.25 84.02 0.86 -17.52 16 21 H 0.14 6.37 7.83 -2.91 -0.02 6.34 16 22 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 23 N -0.82 -46.79 11.81 21.66 0.26 -46.53 16 24 Si 1.02 38.11 29.55 68.60 2.03 40.14 16 25 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 26 H -0.28 -10.32 7.11 99.48 0.71 -9.61 16 27 H -0.24 -8.30 7.11 99.48 0.71 -7.60 16 28 C -0.07 -3.36 11.50 83.41 0.96 -2.40 16 29 H 0.08 1.33 7.50 -2.39 -0.02 1.31 16 30 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.07 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.08 7.23 -2.39 -0.02 1.06 16 34 H 0.11 0.54 7.80 -2.39 -0.02 0.53 16 35 H 0.14 0.16 7.84 -2.39 -0.02 0.14 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.87 7.51 -2.39 -0.02 0.86 16 38 H 0.13 1.37 7.09 -2.38 -0.02 1.35 16 39 H 0.42 12.40 8.31 -92.71 -0.77 11.63 16 40 H 0.18 9.04 5.92 -2.91 -0.02 9.02 16 41 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 Total: -1.00 -78.52 353.53 3.27 -75.24 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.29 Total: 36.10 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 8.62 Total: 28.44 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -7.53 Total: -124.97 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.14 Total: -54.95 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -78.52 3.27 -75.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784784610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.997 kcal (2) G-P(sol) polarization free energy of solvation -78.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds