Wall clock time and date at job start Tue Mar 31 2020 19:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34208 * 118.89622 * 2 1 4 4 C 1.41273 * 118.45904 * 0.55703 * 3 2 1 5 5 O 1.21707 * 119.99568 * 359.97438 * 4 3 2 6 6 O 1.34964 * 120.00103 * 179.97438 * 4 3 2 7 7 C 1.42893 * 117.00038 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47254 * 180.02562 * 7 6 4 9 9 O 1.21298 * 120.00020 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00296 * 179.97438 * 8 7 6 11 11 C 1.37096 * 120.00359 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99981 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00311 * 180.02562 * 11 10 8 14 14 N 1.31416 * 120.00158 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99871 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47043 * 89.99871 * 15 13 11 17 17 H 1.48496 * 109.47331 * 209.99836 * 15 13 11 18 18 H 1.48503 * 109.46946 * 329.99959 * 15 13 11 19 19 C 1.50546 * 123.08316 * 180.54492 * 3 2 1 20 20 H 1.09002 * 109.47878 * 227.83928 * 19 3 2 21 21 C 1.53001 * 109.48002 * 107.81966 * 19 3 2 22 22 N 1.46026 * 109.43651 * 347.82950 * 19 3 2 23 23 N 1.39402 * 129.85438 * 191.95186 * 22 19 3 24 24 C 1.31032 * 106.74691 * 180.33683 * 23 22 19 25 25 N 1.33692 * 109.18748 * 359.90646 * 24 23 22 26 26 C 1.30475 * 109.55578 * 359.93636 * 25 24 23 27 27 N 1.37241 * 118.89497 * 180.02562 * 2 1 3 28 28 C 1.46496 * 121.29768 * 12.32136 * 27 2 1 29 29 H 1.09000 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47320 * 299.98940 * 1 2 3 31 31 H 1.08999 * 109.47093 * 59.99492 * 1 2 3 32 32 H 1.09000 * 109.47350 * 300.00617 * 7 6 4 33 33 H 1.09004 * 109.47092 * 60.00419 * 7 6 4 34 34 H 0.97004 * 119.99830 * 0.02562 * 10 8 7 35 35 H 0.96997 * 120.00074 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47190 * 300.01734 * 21 19 3 37 37 H 1.09001 * 109.46701 * 60.02145 * 21 19 3 38 38 H 1.08998 * 109.47085 * 180.02562 * 21 19 3 39 39 H 1.07997 * 125.40363 * 179.87727 * 24 23 22 40 40 H 1.09004 * 109.47600 * 180.02562 * 28 27 2 41 41 H 1.09004 * 109.47383 * 300.02531 * 28 27 2 42 42 H 1.09001 * 109.47105 * 60.02733 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1556 1.1750 0.0000 4 6 1.3936 2.3645 0.0121 5 8 0.1778 2.3083 0.0217 6 8 2.0137 3.5633 0.0130 7 6 1.1810 4.7244 0.0249 8 6 2.0429 5.9607 0.0234 9 8 3.2514 5.8574 0.0127 10 7 1.4709 7.1810 0.0330 11 6 2.2549 8.3056 0.0322 12 1 3.3310 8.2137 0.0235 13 6 1.6651 9.5637 0.0426 14 7 2.4167 10.6418 0.0414 15 14 -0.1960 9.7227 0.0584 16 1 -0.6778 9.7586 1.4626 17 1 -0.5917 10.9760 -0.6328 18 1 -0.7981 8.5599 -0.6420 19 6 3.6570 1.2849 -0.0120 20 1 3.9755 1.9959 0.7504 21 6 4.1222 1.7687 -1.3869 22 7 4.2423 -0.0234 0.2674 23 7 5.5579 -0.3661 0.5757 24 6 5.5822 -1.6667 0.7332 25 7 4.3527 -2.1556 0.5420 26 6 3.5330 -1.1794 0.2633 27 7 2.1702 -1.2016 -0.0005 28 6 1.4673 -2.4586 -0.2682 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5136 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.5448 4.7244 -0.8601 33 1 0.5587 4.7161 0.9198 34 1 0.5044 7.2635 0.0412 35 1 2.0050 11.5200 0.0490 36 1 3.8037 1.0577 -2.1492 37 1 3.6850 2.7452 -1.5955 38 1 5.2092 1.8478 -1.3956 39 1 6.4569 -2.2510 0.9780 40 1 2.1737 -3.2874 -0.2205 41 1 0.6858 -2.6040 0.4777 42 1 1.0191 -2.4200 -1.2611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791466726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:52 Heat of formation + Delta-G solvation = 24.408341 kcal Electronic energy + Delta-G solvation = -29070.189745 eV Core-core repulsion = 24861.254092 eV Total energy + Delta-G solvation = -4208.935652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.84561 -40.95220 -39.23276 -38.24298 -36.43237 -36.06708 -34.05251 -32.65470 -31.80138 -31.59837 -30.24421 -29.01982 -28.23743 -26.91591 -24.77103 -24.14264 -22.80386 -21.82640 -21.57009 -19.66211 -19.16836 -18.71053 -18.13789 -17.24448 -17.04827 -16.44841 -16.24359 -15.94129 -15.51597 -15.22525 -14.97485 -14.86496 -14.63594 -14.38254 -13.67834 -13.58817 -13.39647 -13.33423 -13.13184 -12.96414 -12.63047 -12.36369 -12.34039 -12.31775 -12.17198 -12.00838 -11.77463 -11.26489 -11.21797 -10.65076 -10.45892 -10.37807 -10.22844 -10.08125 -10.04084 -9.95273 -9.66809 -8.64982 -8.28709 -8.27214 -6.38677 -3.91490 0.57449 1.42243 1.54006 2.21927 2.63180 2.78034 2.83894 2.98452 3.03233 3.12153 3.56977 3.70732 4.03838 4.06897 4.30311 4.45495 4.53229 4.65862 4.72842 4.82313 4.95552 5.03535 5.11961 5.13318 5.17378 5.27890 5.29965 5.38909 5.56473 5.60699 5.67072 5.68478 5.73359 5.87981 6.03700 6.10695 6.22393 6.28027 6.54590 6.73032 7.45273 7.78730 7.81028 8.02000 8.48637 8.84632 9.30720 9.66738 10.73687 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.002713 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.849020 B =10318.272216 C =11423.933770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.258 3.742 3 C -0.291 4.291 4 C 0.525 3.475 5 O -0.523 6.523 6 O -0.318 6.318 7 C 0.059 3.941 8 C 0.448 3.552 9 O -0.556 6.556 10 N -0.580 5.580 11 C -0.307 4.307 12 H 0.122 0.878 13 C 0.045 3.955 14 N -0.876 5.876 15 Si 0.879 3.121 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.268 1.268 19 C 0.226 3.774 20 H 0.114 0.886 21 C -0.156 4.156 22 N -0.382 5.382 23 N -0.293 5.293 24 C 0.209 3.791 25 N -0.553 5.553 26 C 0.488 3.512 27 N -0.506 5.506 28 C 0.091 3.909 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.373 0.627 35 H 0.275 0.725 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.225 0.775 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -26.805 -1.111 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.152 3.848 3 C -0.302 4.302 4 C 0.374 3.626 5 O -0.416 6.416 6 O -0.233 6.233 7 C -0.019 4.019 8 C 0.233 3.767 9 O -0.438 6.438 10 N -0.220 5.220 11 C -0.436 4.436 12 H 0.140 0.860 13 C -0.159 4.159 14 N -0.515 5.515 15 Si 0.705 3.295 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.193 1.193 19 C 0.124 3.876 20 H 0.132 0.868 21 C -0.214 4.214 22 N -0.177 5.177 23 N -0.121 5.121 24 C -0.094 4.094 25 N -0.287 5.287 26 C 0.125 3.875 27 N -0.212 5.212 28 C -0.050 4.050 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.206 0.794 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.241 0.759 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.803 -26.554 -1.053 27.005 hybrid contribution -1.671 0.483 0.026 1.740 sum -6.474 -26.071 -1.027 26.883 Atomic orbital electron populations 1.21468 0.86073 1.02814 1.06882 1.20004 0.95306 0.83199 0.86322 1.18535 0.94362 0.91131 1.26146 1.18627 0.86090 0.83873 0.73998 1.90887 1.14496 1.87762 1.48434 1.86234 1.39853 1.13550 1.83618 1.22340 0.92898 0.83295 1.03411 1.19221 0.88740 0.83347 0.85415 1.90611 1.13897 1.85822 1.53441 1.42036 1.08018 1.05333 1.66633 1.19424 0.93905 0.81661 1.48580 0.86019 1.25040 0.98550 0.95014 0.97325 1.69615 1.35446 0.97947 1.48478 0.86679 0.85021 0.78729 0.79068 1.19441 1.20000 1.19335 1.19743 0.87108 0.80007 1.00758 0.86789 1.22193 1.02820 1.02826 0.93538 1.50500 1.05667 1.07596 1.53969 1.78012 0.94434 1.15491 1.24147 1.26056 0.95164 0.89600 0.98543 1.70202 1.01424 1.28911 1.28135 1.20245 0.85753 0.84732 0.96819 1.42791 1.02103 1.07394 1.68910 1.22078 0.98046 0.82762 1.02087 0.91490 0.87300 0.87383 0.89669 0.89714 0.79419 0.91411 0.92817 0.88652 0.90922 0.75907 0.87992 0.90204 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 8.04 36.01 0.29 -0.60 16 2 C 0.26 2.62 6.58 -81.59 -0.54 2.08 16 3 C -0.29 -3.67 5.13 -104.96 -0.54 -4.21 16 4 C 0.53 7.50 7.45 31.88 0.24 7.74 16 5 O -0.52 -7.35 12.18 -19.43 -0.24 -7.58 16 6 O -0.32 -5.39 7.95 -47.98 -0.38 -5.77 16 7 C 0.06 1.00 5.86 36.00 0.21 1.22 16 8 C 0.45 10.10 7.86 -10.99 -0.09 10.01 16 9 O -0.56 -14.90 16.08 -14.37 -0.23 -15.13 16 10 N -0.58 -13.53 5.09 -10.96 -0.06 -13.59 16 11 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 12 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 13 C 0.04 1.20 5.50 -17.46 -0.10 1.10 16 14 N -0.88 -25.09 13.96 55.50 0.77 -24.32 16 15 Si 0.88 18.86 27.74 -169.99 -4.71 14.15 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 19 C 0.23 3.09 3.35 -69.41 -0.23 2.85 16 20 H 0.11 1.72 8.03 -51.93 -0.42 1.30 16 21 C -0.16 -2.06 9.39 37.16 0.35 -1.71 16 22 N -0.38 -5.19 3.70 -56.89 -0.21 -5.40 16 23 N -0.29 -3.97 12.75 29.43 0.38 -3.60 16 24 C 0.21 2.28 13.03 -91.15 -1.19 1.09 16 25 N -0.55 -6.53 10.77 -14.99 -0.16 -6.69 16 26 C 0.49 5.94 8.23 -320.58 -2.64 3.31 16 27 N -0.51 -4.78 3.15 -120.65 -0.38 -5.16 16 28 C 0.09 0.47 9.54 59.84 0.57 1.04 16 29 H 0.07 0.31 5.96 -51.93 -0.31 0.00 16 30 H 0.11 0.95 7.00 -51.93 -0.36 0.59 16 31 H 0.11 0.89 7.07 -51.93 -0.37 0.52 16 32 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.08 1.28 8.13 -51.93 -0.42 0.85 16 34 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 35 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.38 7.09 -51.93 -0.37 1.01 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.22 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.10 0.55 7.60 -51.93 -0.39 0.16 16 41 H 0.08 0.26 7.29 -51.93 -0.38 -0.12 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -35.03 354.43 -8.61 -43.65 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.92 Total: 8.87 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: -3.81 Total: 15.25 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.34 Total: -58.76 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.85 Total: -28.49 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.03 -8.61 -43.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791466726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.054 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds