Wall clock time and date at job start Tue Mar 31 2020 19:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.44739 * 2 1 4 4 C 1.53037 * 109.46319 * 119.96657 * 2 1 3 5 5 C 1.53196 * 109.31267 * 181.39002 * 4 2 1 6 6 N 1.46936 * 108.89055 * 305.29378 * 5 4 2 7 7 C 1.34781 * 120.62788 * 233.67728 * 6 5 4 8 8 O 1.21360 * 119.99824 * 352.45290 * 7 6 5 9 9 C 1.49361 * 119.99928 * 172.45275 * 7 6 5 10 10 O 1.21361 * 120.00000 * 354.09753 * 9 7 6 11 11 N 1.34771 * 120.00261 * 174.09323 * 9 7 6 12 12 C 1.39113 * 120.00227 * 184.10122 * 11 9 7 13 13 C 1.39711 * 119.57598 * 174.90627 * 12 11 9 14 14 C 1.38655 * 119.48799 * 179.76207 * 13 12 11 15 15 C 1.38348 * 118.67427 * 0.50357 * 14 13 12 16 16 C 1.40593 * 119.13278 * 359.74264 * 15 14 13 17 17 C 1.41333 * 119.78530 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00058 * 3.06695 * 17 16 15 19 19 C 1.40030 * 120.00528 * 183.06907 * 17 16 15 20 20 N 1.30737 * 119.99572 * 3.42659 * 19 17 16 21 21 Si 1.86796 * 120.00289 * 183.43194 * 19 17 16 22 22 H 1.48496 * 109.47493 * 95.00046 * 21 19 17 23 23 H 1.48501 * 109.46754 * 215.00055 * 21 19 17 24 24 H 1.48502 * 109.46902 * 334.99676 * 21 19 17 25 25 N 1.31931 * 119.57836 * 355.17557 * 12 11 9 26 26 C 1.47203 * 118.55354 * 53.53956 * 6 5 4 27 27 C 1.53042 * 109.45946 * 240.03931 * 2 1 3 28 28 H 1.08998 * 109.49585 * 298.55608 * 27 2 1 29 29 F 1.39894 * 109.49928 * 58.62486 * 27 2 1 30 30 H 1.09004 * 109.47262 * 300.02755 * 1 2 3 31 31 H 1.09000 * 109.47749 * 60.03383 * 1 2 3 32 32 H 1.09007 * 109.46798 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.49732 * 61.43545 * 4 2 1 34 34 H 1.08999 * 109.49732 * 301.33531 * 4 2 1 35 35 H 1.08999 * 109.58970 * 65.15226 * 5 4 2 36 36 H 1.08998 * 109.58559 * 185.43679 * 5 4 2 37 37 H 0.97001 * 119.99635 * 4.10253 * 11 9 7 38 38 H 1.07994 * 120.25303 * 0.02634 * 13 12 11 39 39 H 1.08008 * 120.66047 * 180.24291 * 14 13 12 40 40 H 1.07999 * 120.43339 * 179.76647 * 15 14 13 41 41 H 0.97001 * 120.00339 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.52924 * 186.67502 * 26 6 5 43 43 H 1.08995 * 109.67653 * 66.37441 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5714 -0.6884 1.2642 6 7 4.0708 -1.2497 0.0014 7 6 4.9646 -2.2586 0.0043 8 8 5.4678 -2.6203 1.0477 9 6 5.3356 -2.9312 -1.2766 10 8 4.7556 -2.6438 -2.3031 11 7 6.3146 -3.8573 -1.2925 12 6 6.7187 -4.4217 -2.4980 13 6 7.8048 -5.3003 -2.5184 14 6 8.2029 -5.8657 -3.7202 15 6 7.5132 -5.5312 -4.8719 16 6 6.4318 -4.6368 -4.7867 17 6 5.7179 -4.2851 -5.9547 18 1 5.9717 -4.7408 -6.9005 19 6 4.6816 -3.3459 -5.8858 20 7 4.4184 -2.7448 -4.7551 21 14 3.6752 -2.9520 -7.4094 22 1 2.4444 -3.7828 -7.4181 23 1 3.3022 -1.5147 -7.3982 24 1 4.4791 -3.2454 -8.6231 25 7 6.0748 -4.1164 -3.6083 26 6 3.5713 -0.6883 -1.2644 27 6 2.0398 -0.7206 -1.2502 28 1 1.6979 -1.7555 -1.2384 29 9 1.5480 -0.0793 -2.3920 30 1 -0.3634 0.5143 0.8898 31 1 -0.3634 0.5133 -0.8903 32 1 -0.3633 -1.0278 0.0005 33 1 1.6979 -1.7556 1.2382 34 1 1.6573 -0.2207 2.1398 35 1 3.9143 0.3411 1.3673 36 1 3.9417 -1.2823 2.0998 37 1 6.7375 -4.1303 -0.4633 38 1 8.3275 -5.5405 -1.6044 39 1 9.0376 -6.5503 -3.7571 40 1 7.8015 -5.9519 -5.8239 41 1 3.7003 -2.0944 -4.7072 42 1 3.9416 -1.2842 -2.0985 43 1 3.9142 0.3409 -1.3700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890071072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:56 Heat of formation + Delta-G solvation = -46.032448 kcal Electronic energy + Delta-G solvation = -29935.367317 eV Core-core repulsion = 25703.457161 eV Total energy + Delta-G solvation = -4231.910156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.53348 -40.64730 -38.94400 -37.62288 -37.31477 -34.70276 -33.73886 -33.06249 -30.71440 -30.41717 -29.31287 -28.51368 -25.88742 -24.97950 -23.38735 -22.87949 -21.69064 -21.09918 -20.31110 -19.31062 -18.07368 -17.08215 -16.82612 -16.22299 -15.85167 -15.80267 -15.48989 -15.00880 -14.74616 -14.58485 -14.52833 -14.36946 -13.92532 -13.66058 -13.30842 -13.21816 -12.95665 -12.81834 -12.58576 -12.48079 -12.08098 -12.05093 -11.92772 -11.40724 -11.22246 -11.05354 -11.02544 -10.86954 -10.83369 -10.71968 -10.55657 -10.36243 -9.99556 -9.86287 -9.13811 -8.81379 -8.65455 -8.08391 -7.35420 -7.13297 -6.28003 -4.48337 1.75101 2.55958 2.77555 3.03388 3.15076 3.16905 3.21760 3.74086 3.80479 4.00702 4.30493 4.47246 4.51801 4.67985 4.76478 4.82790 4.97933 5.10396 5.25116 5.34514 5.44215 5.52812 5.62374 5.68797 5.71634 5.75970 5.91972 6.01261 6.01873 6.04884 6.20963 6.35793 6.42135 6.53032 6.74580 6.75614 7.13442 7.18976 7.37909 7.48527 7.71803 7.75497 7.97235 8.08252 8.32413 8.56766 8.85787 8.96074 10.08212 10.36999 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.004829 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.288185 B = 5796.648526 C = 8138.614128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 H 0.081 0.919 4 C -0.125 4.125 5 C 0.104 3.896 6 N -0.583 5.583 7 C 0.513 3.487 8 O -0.531 6.531 9 C 0.472 3.528 10 O -0.378 6.378 11 N -0.633 5.633 12 C 0.365 3.635 13 C -0.347 4.347 14 C -0.036 4.036 15 C -0.299 4.299 16 C 0.272 3.728 17 C -0.422 4.422 18 H 0.084 0.916 19 C 0.062 3.938 20 N -0.665 5.665 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.263 1.263 25 N -0.474 5.474 26 C 0.023 3.977 27 C 0.091 3.909 28 H 0.085 0.915 29 F -0.204 7.204 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.273 0.727 42 H 0.180 0.820 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 6.122 10.318 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 H 0.100 0.900 4 C -0.163 4.163 5 C -0.019 4.019 6 N -0.317 5.317 7 C 0.296 3.704 8 O -0.407 6.407 9 C 0.250 3.750 10 O -0.243 6.243 11 N -0.280 5.280 12 C 0.127 3.873 13 C -0.373 4.373 14 C -0.060 4.060 15 C -0.322 4.322 16 C 0.147 3.853 17 C -0.453 4.453 18 H 0.102 0.898 19 C -0.167 4.167 20 N -0.284 5.284 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.187 1.187 25 N -0.193 5.193 26 C -0.099 4.099 27 C 0.054 3.946 28 H 0.103 0.897 29 F -0.185 7.185 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.249 0.751 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.196 0.804 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.828 6.962 10.215 14.122 hybrid contribution 0.362 -0.350 -0.121 0.518 sum -6.466 6.612 10.094 13.690 Atomic orbital electron populations 1.21804 0.94133 1.02291 1.02268 1.21794 0.97023 1.00562 0.94659 0.90015 1.21944 0.94988 1.01699 0.97715 1.21746 0.93634 0.99504 0.86972 1.47833 1.42222 1.33997 1.07635 1.20673 0.79490 0.79994 0.90229 1.90695 1.52360 1.63905 1.33757 1.20170 0.83125 0.82792 0.88960 1.90732 1.45853 1.56519 1.31187 1.43010 1.36287 1.39464 1.09267 1.18528 0.91077 0.91193 0.86462 1.20501 1.05919 1.12710 0.98202 1.20591 0.96763 0.96197 0.92445 1.21662 1.03742 1.09613 0.97197 1.18337 0.88902 0.87674 0.90373 1.19609 1.12529 1.18993 0.94129 0.89807 1.26117 0.97653 0.96019 0.96888 1.70241 1.20922 1.13840 1.23417 0.86475 0.80433 0.78411 0.82534 1.19654 1.20105 1.18709 1.68592 1.28482 1.26433 0.95827 1.23938 0.93086 1.02910 0.89925 1.21798 0.94444 0.96720 0.81619 0.89662 1.92805 1.88875 1.83997 1.52788 0.92301 0.91886 0.92444 0.90998 0.89871 0.91050 0.88578 0.75118 0.88703 0.88332 0.88335 0.91536 0.80449 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.06 37.15 0.34 -1.01 16 2 C -0.12 -1.24 2.48 -90.58 -0.23 -1.46 16 3 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 4 C -0.13 -1.15 5.36 -26.61 -0.14 -1.29 16 5 C 0.10 1.14 6.40 -3.70 -0.02 1.11 16 6 N -0.58 -8.35 2.98 -173.08 -0.52 -8.87 16 7 C 0.51 8.70 7.74 -11.62 -0.09 8.61 16 8 O -0.53 -9.40 15.94 5.49 0.09 -9.31 16 9 C 0.47 9.38 7.74 -11.63 -0.09 9.29 16 10 O -0.38 -8.44 8.87 5.49 0.05 -8.40 16 11 N -0.63 -12.67 5.37 -11.83 -0.06 -12.74 16 12 C 0.37 8.63 7.43 -155.09 -1.15 7.48 16 13 C -0.35 -7.60 9.96 -38.88 -0.39 -7.99 16 14 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 15 C -0.30 -7.23 9.83 -38.65 -0.38 -7.61 16 16 C 0.27 7.30 6.54 -85.00 -0.56 6.74 16 17 C -0.42 -11.08 9.14 -37.73 -0.34 -11.42 16 18 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 19 C 0.06 1.55 5.49 -17.35 -0.10 1.45 16 20 N -0.67 -17.08 9.02 55.55 0.50 -16.58 16 21 Si 0.90 18.57 29.56 -169.99 -5.03 13.54 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 N -0.47 -12.62 5.75 -10.28 -0.06 -12.68 16 26 C 0.02 0.34 6.02 -3.56 -0.02 0.32 16 27 C 0.09 1.22 3.45 -26.61 -0.09 1.13 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 29 F -0.20 -3.13 16.51 2.25 0.04 -3.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.62 7.77 -51.93 -0.40 0.22 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.10 7.06 -51.93 -0.37 0.73 16 37 H 0.41 7.07 8.17 -40.82 -0.33 6.74 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 41 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 42 H 0.18 3.29 3.81 -56.62 -0.22 3.07 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -29.48 354.39 -8.83 -38.31 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.52 Total: 10.31 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -3.66 Total: 4.16 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.14 Total: -50.86 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.14 Total: -17.71 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.48 -8.83 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890071072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.727 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds