Wall clock time and date at job start Tue Mar 31 2020 19:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.44739 * 2 1 4 4 C 1.53037 * 109.46319 * 119.96657 * 2 1 3 5 5 C 1.53196 * 109.31267 * 181.39002 * 4 2 1 6 6 N 1.46936 * 108.89055 * 305.29378 * 5 4 2 7 7 C 1.34781 * 120.62788 * 233.67728 * 6 5 4 8 8 O 1.21360 * 119.99824 * 352.45290 * 7 6 5 9 9 C 1.49361 * 119.99928 * 172.45275 * 7 6 5 10 10 O 1.21361 * 120.00000 * 354.09753 * 9 7 6 11 11 N 1.34771 * 120.00261 * 174.09323 * 9 7 6 12 12 C 1.39113 * 120.00227 * 184.10122 * 11 9 7 13 13 C 1.39711 * 119.57598 * 174.90627 * 12 11 9 14 14 C 1.38655 * 119.48799 * 179.76207 * 13 12 11 15 15 C 1.38348 * 118.67427 * 0.50357 * 14 13 12 16 16 C 1.40593 * 119.13278 * 359.74264 * 15 14 13 17 17 C 1.41333 * 119.78530 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00058 * 3.06695 * 17 16 15 19 19 C 1.40030 * 120.00528 * 183.06907 * 17 16 15 20 20 N 1.30737 * 119.99572 * 3.42659 * 19 17 16 21 21 Si 1.86796 * 120.00289 * 183.43194 * 19 17 16 22 22 H 1.48496 * 109.47493 * 95.00046 * 21 19 17 23 23 H 1.48501 * 109.46754 * 215.00055 * 21 19 17 24 24 H 1.48502 * 109.46902 * 334.99676 * 21 19 17 25 25 N 1.31931 * 119.57836 * 355.17557 * 12 11 9 26 26 C 1.47203 * 118.55354 * 53.53956 * 6 5 4 27 27 C 1.53042 * 109.45946 * 240.03931 * 2 1 3 28 28 H 1.08998 * 109.49585 * 298.55608 * 27 2 1 29 29 F 1.39894 * 109.49928 * 58.62486 * 27 2 1 30 30 H 1.09004 * 109.47262 * 300.02755 * 1 2 3 31 31 H 1.09000 * 109.47749 * 60.03383 * 1 2 3 32 32 H 1.09007 * 109.46798 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.49732 * 61.43545 * 4 2 1 34 34 H 1.08999 * 109.49732 * 301.33531 * 4 2 1 35 35 H 1.08999 * 109.58970 * 65.15226 * 5 4 2 36 36 H 1.08998 * 109.58559 * 185.43679 * 5 4 2 37 37 H 0.97001 * 119.99635 * 4.10253 * 11 9 7 38 38 H 1.07994 * 120.25303 * 0.02634 * 13 12 11 39 39 H 1.08008 * 120.66047 * 180.24291 * 14 13 12 40 40 H 1.07999 * 120.43339 * 179.76647 * 15 14 13 41 41 H 0.97001 * 120.00339 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.52924 * 186.67502 * 26 6 5 43 43 H 1.08995 * 109.67653 * 66.37441 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5714 -0.6884 1.2642 6 7 4.0708 -1.2497 0.0014 7 6 4.9646 -2.2586 0.0043 8 8 5.4678 -2.6203 1.0477 9 6 5.3356 -2.9312 -1.2766 10 8 4.7556 -2.6438 -2.3031 11 7 6.3146 -3.8573 -1.2925 12 6 6.7187 -4.4217 -2.4980 13 6 7.8048 -5.3003 -2.5184 14 6 8.2029 -5.8657 -3.7202 15 6 7.5132 -5.5312 -4.8719 16 6 6.4318 -4.6368 -4.7867 17 6 5.7179 -4.2851 -5.9547 18 1 5.9717 -4.7408 -6.9005 19 6 4.6816 -3.3459 -5.8858 20 7 4.4184 -2.7448 -4.7551 21 14 3.6752 -2.9520 -7.4094 22 1 2.4444 -3.7828 -7.4181 23 1 3.3022 -1.5147 -7.3982 24 1 4.4791 -3.2454 -8.6231 25 7 6.0748 -4.1164 -3.6083 26 6 3.5713 -0.6883 -1.2644 27 6 2.0398 -0.7206 -1.2502 28 1 1.6979 -1.7555 -1.2384 29 9 1.5480 -0.0793 -2.3920 30 1 -0.3634 0.5143 0.8898 31 1 -0.3634 0.5133 -0.8903 32 1 -0.3633 -1.0278 0.0005 33 1 1.6979 -1.7556 1.2382 34 1 1.6573 -0.2207 2.1398 35 1 3.9143 0.3411 1.3673 36 1 3.9417 -1.2823 2.0998 37 1 6.7375 -4.1303 -0.4633 38 1 8.3275 -5.5405 -1.6044 39 1 9.0376 -6.5503 -3.7571 40 1 7.8015 -5.9519 -5.8239 41 1 3.7003 -2.0944 -4.7072 42 1 3.9416 -1.2842 -2.0985 43 1 3.9142 0.3409 -1.3700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890071072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:56 Heat of formation + Delta-G solvation = -62.713536 kcal Electronic energy + Delta-G solvation = -29936.090663 eV Core-core repulsion = 25703.457161 eV Total energy + Delta-G solvation = -4232.633502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.70470 -42.04764 -40.49380 -39.12457 -38.62943 -36.26651 -35.14604 -34.62124 -32.27616 -31.69404 -31.10200 -29.55274 -27.65810 -26.35541 -24.45328 -24.18634 -23.35230 -22.53799 -21.56886 -20.66994 -19.68316 -18.63712 -18.26006 -17.74532 -17.16744 -16.97565 -16.50773 -16.45178 -16.34279 -16.27396 -15.85866 -15.62688 -15.55695 -15.11725 -14.69417 -14.52590 -14.18673 -13.97301 -13.83642 -13.76316 -13.62462 -13.33064 -12.90910 -12.75066 -12.73962 -12.56620 -12.44779 -12.32028 -12.16311 -11.96617 -11.76263 -11.68399 -11.62675 -11.41006 -10.92584 -10.19644 -9.94214 -9.92627 -9.12927 -8.93775 -8.11250 -6.41617 0.27185 1.01029 1.23989 1.27835 1.43002 1.53286 1.55526 2.26935 2.27539 2.34947 2.97404 3.21775 3.41943 3.50688 3.67466 3.74261 3.95164 4.01482 4.23884 4.32281 4.36675 4.45980 4.59039 4.62075 4.67047 4.75262 4.79866 4.80548 4.86204 4.94745 4.96019 4.98438 5.06903 5.22675 5.27551 5.32976 5.36979 5.63427 5.76478 5.87433 5.91603 6.07676 6.26697 6.44866 6.67453 6.78912 7.04006 7.25853 8.23684 8.53494 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.004829 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.288185 B = 5796.648526 C = 8138.614128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.117 4.117 5 C 0.099 3.901 6 N -0.572 5.572 7 C 0.520 3.480 8 O -0.539 6.539 9 C 0.461 3.539 10 O -0.404 6.404 11 N -0.628 5.628 12 C 0.346 3.654 13 C -0.341 4.341 14 C -0.033 4.033 15 C -0.321 4.321 16 C 0.240 3.760 17 C -0.460 4.460 18 H 0.086 0.914 19 C 0.020 3.980 20 N -0.691 5.691 21 Si 0.969 3.031 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.256 1.256 25 N -0.504 5.504 26 C 0.025 3.975 27 C 0.090 3.910 28 H 0.072 0.928 29 F -0.217 7.217 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.425 0.575 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.273 0.727 42 H 0.145 0.855 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 6.929 12.096 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 H 0.111 0.889 4 C -0.155 4.155 5 C -0.022 4.022 6 N -0.305 5.305 7 C 0.302 3.698 8 O -0.417 6.417 9 C 0.240 3.760 10 O -0.270 6.270 11 N -0.277 5.277 12 C 0.108 3.892 13 C -0.366 4.366 14 C -0.057 4.057 15 C -0.344 4.344 16 C 0.115 3.885 17 C -0.490 4.490 18 H 0.104 0.896 19 C -0.206 4.206 20 N -0.311 5.311 21 Si 0.790 3.210 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.180 1.180 25 N -0.224 5.224 26 C -0.097 4.097 27 C 0.053 3.947 28 H 0.090 0.910 29 F -0.198 7.198 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.264 0.736 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.162 0.838 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.253 7.777 12.036 16.061 hybrid contribution 0.573 -0.630 -0.573 1.026 sum -6.681 7.147 11.464 15.071 Atomic orbital electron populations 1.21790 0.93085 1.02349 1.03009 1.21768 0.97817 1.00668 0.92980 0.88863 1.21944 0.93377 1.01651 0.98498 1.22085 0.94922 1.00401 0.84775 1.47873 1.40979 1.32785 1.08906 1.20032 0.80381 0.80715 0.88668 1.90690 1.53112 1.64588 1.33304 1.20818 0.82605 0.82565 0.90000 1.90795 1.46534 1.57042 1.32672 1.43010 1.36564 1.39439 1.08736 1.18969 0.91606 0.91691 0.86891 1.20950 1.04919 1.11084 0.99675 1.21042 0.97145 0.96006 0.91526 1.21853 1.03884 1.09964 0.98709 1.18798 0.90085 0.88712 0.90943 1.19895 1.14136 1.20584 0.94410 0.89556 1.26872 0.98344 0.95547 0.99864 1.70388 1.21319 1.14196 1.25154 0.85390 0.78596 0.78073 0.78904 1.19491 1.19694 1.17981 1.68556 1.29767 1.27459 0.96580 1.23677 0.94224 1.02595 0.89160 1.21876 0.93350 0.96681 0.82810 0.91017 1.92777 1.88925 1.84142 1.53918 0.89808 0.92891 0.92779 0.91751 0.86294 0.88772 0.88586 0.73644 0.85260 0.84364 0.87433 0.91611 0.83830 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.06 71.98 0.65 -1.65 16 2 C -0.11 -2.05 2.48 -10.77 -0.03 -2.07 16 3 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 4 C -0.12 -1.78 5.36 30.67 0.16 -1.61 16 5 C 0.10 1.90 6.40 86.36 0.55 2.46 16 6 N -0.57 -15.92 2.98 -819.85 -2.45 -18.37 16 7 C 0.52 17.54 7.74 87.24 0.68 18.21 16 8 O -0.54 -18.58 15.94 -3.28 -0.05 -18.63 16 9 C 0.46 18.82 7.74 87.24 0.68 19.50 16 10 O -0.40 -18.94 8.87 -3.28 -0.03 -18.97 16 11 N -0.63 -25.42 5.37 -309.71 -1.66 -27.09 16 12 C 0.35 16.55 7.43 133.31 0.99 17.54 16 13 C -0.34 -14.47 9.96 22.73 0.23 -14.25 16 14 C -0.03 -1.41 10.15 22.40 0.23 -1.18 16 15 C -0.32 -15.70 9.83 22.87 0.22 -15.48 16 16 C 0.24 13.33 6.54 40.20 0.26 13.59 16 17 C -0.46 -25.11 9.14 23.47 0.21 -24.90 16 18 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 19 C 0.02 1.02 5.49 85.29 0.47 1.48 16 20 N -0.69 -37.15 9.02 21.84 0.20 -36.95 16 21 Si 0.97 39.35 29.56 68.60 2.03 41.38 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 25 N -0.50 -27.76 5.75 -186.43 -1.07 -28.83 16 26 C 0.03 0.76 6.02 86.31 0.52 1.28 16 27 C 0.09 2.39 3.45 30.67 0.11 2.50 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 F -0.22 -6.71 16.51 44.97 0.74 -5.96 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 0.95 7.77 -2.39 -0.02 0.94 16 32 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.93 7.06 -2.39 -0.02 1.91 16 37 H 0.43 14.37 8.17 -92.71 -0.76 13.62 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 41 H 0.27 13.77 8.29 -92.71 -0.77 13.00 16 42 H 0.15 5.59 3.81 -76.60 -0.29 5.30 16 43 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -66.66 354.39 3.65 -63.01 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.02 Total: 35.00 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 5.93 Total: 15.42 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.99 Total: -111.24 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.08 Total: -37.60 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.74 Total: -5.96 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -66.66 3.65 -63.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890071072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.295 kcal (2) G-P(sol) polarization free energy of solvation -66.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds