Wall clock time and date at job start Tue Mar 31 2020 19:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46282 * 2 1 4 4 C 1.53039 * 109.46197 * 240.02243 * 2 1 3 5 5 C 1.53193 * 109.31522 * 178.61700 * 4 2 1 6 6 N 1.46925 * 108.77177 * 54.63426 * 5 4 2 7 7 C 1.34781 * 120.62714 * 126.37303 * 6 5 4 8 8 O 1.21354 * 119.99988 * 6.85524 * 7 6 5 9 9 C 1.49372 * 119.99923 * 186.85673 * 7 6 5 10 10 O 1.21353 * 119.99711 * 6.71007 * 9 7 6 11 11 N 1.34773 * 119.99797 * 186.70792 * 9 7 6 12 12 C 1.39119 * 119.99852 * 185.03086 * 11 9 7 13 13 C 1.39709 * 119.57881 * 174.80621 * 12 11 9 14 14 C 1.38647 * 119.49084 * 180.02562 * 13 12 11 15 15 C 1.38339 * 118.67522 * 359.71799 * 14 13 12 16 16 C 1.40604 * 119.13404 * 0.54696 * 15 14 13 17 17 C 1.41332 * 119.78563 * 179.72743 * 16 15 14 18 18 H 1.08007 * 120.00334 * 354.52668 * 17 16 15 19 19 C 1.40024 * 120.00249 * 174.53212 * 17 16 15 20 20 N 1.30744 * 119.99949 * 5.01889 * 19 17 16 21 21 Si 1.86800 * 120.00310 * 185.01965 * 19 17 16 22 22 H 1.48500 * 109.46939 * 94.99979 * 21 19 17 23 23 H 1.48503 * 109.47095 * 214.99713 * 21 19 17 24 24 H 1.48493 * 109.47372 * 334.99908 * 21 19 17 25 25 N 1.31935 * 119.57729 * 354.82664 * 12 11 9 26 26 C 1.46925 * 118.74379 * 306.64263 * 6 5 4 27 27 C 1.52764 * 109.00323 * 53.31110 * 26 6 5 28 28 H 1.09004 * 109.36000 * 65.50264 * 27 26 6 29 29 F 1.39903 * 109.58935 * 185.53919 * 27 26 6 30 30 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47485 * 299.97518 * 1 2 3 32 32 H 1.09002 * 109.46845 * 59.97430 * 1 2 3 33 33 H 1.09000 * 109.49495 * 58.66458 * 4 2 1 34 34 H 1.08999 * 109.49874 * 298.56683 * 4 2 1 35 35 H 1.09004 * 109.58313 * 294.85007 * 5 4 2 36 36 H 1.08995 * 109.70735 * 174.49221 * 5 4 2 37 37 H 0.96998 * 120.00440 * 5.03452 * 11 9 7 38 38 H 1.08003 * 120.25044 * 0.04200 * 13 12 11 39 39 H 1.08003 * 120.66168 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.43630 * 180.26284 * 15 14 13 41 41 H 0.96997 * 120.00809 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.59005 * 173.14711 * 26 6 5 43 43 H 1.08995 * 109.58504 * 293.57611 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5714 -0.6889 -1.2641 6 7 4.0678 -1.2489 0.0003 7 6 4.9613 -2.2579 0.0005 8 8 5.4574 -2.6293 -1.0429 9 6 5.3410 -2.9191 1.2850 10 8 4.7580 -2.6329 2.3101 11 7 6.3309 -3.8334 1.3054 12 6 6.6147 -4.5253 2.4785 13 6 7.5674 -5.5470 2.4633 14 6 7.8485 -6.2356 3.6333 15 6 7.1756 -5.8826 4.7893 16 6 6.2238 -4.8489 4.7388 17 6 5.5241 -4.4809 5.9103 18 1 5.6556 -5.0497 6.8191 19 6 4.6604 -3.3790 5.8930 20 7 4.4252 -2.7503 4.7710 21 14 3.8441 -2.8070 7.4729 22 1 4.6498 -1.7171 8.0798 23 1 2.4795 -2.3047 7.1713 24 1 3.7541 -3.9443 8.4234 25 7 5.9804 -4.2084 3.5911 26 6 3.5671 -0.6922 1.2645 27 6 2.0398 -0.7206 1.2502 28 1 1.6977 -1.7555 1.2386 29 9 1.5480 -0.0790 2.3921 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 1.6573 -0.2211 -2.1397 34 1 1.6978 -1.7559 -1.2380 35 1 3.9143 0.3407 -1.3673 36 1 3.9438 -1.2834 -2.0982 37 1 6.8455 -4.0092 0.5022 38 1 8.0812 -5.7983 1.5471 39 1 8.5812 -7.0291 3.6430 40 1 7.3755 -6.3973 5.7176 41 1 3.8271 -1.9867 4.7589 42 1 3.9345 -1.2904 2.0982 43 1 3.9096 0.3370 1.3716 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890071074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:01 Heat of formation + Delta-G solvation = -45.466262 kcal Electronic energy + Delta-G solvation = -29935.571534 eV Core-core repulsion = 25703.685930 eV Total energy + Delta-G solvation = -4231.885604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.52904 -40.66544 -38.95165 -37.62939 -37.32414 -34.70836 -33.74252 -33.06544 -30.73474 -30.42015 -29.31426 -28.52025 -25.88874 -24.97767 -23.38115 -22.88009 -21.69270 -21.10397 -20.31078 -19.32409 -18.06780 -17.08399 -16.82647 -16.26802 -15.81590 -15.77616 -15.48667 -15.08133 -14.74563 -14.59957 -14.52840 -14.25441 -13.95688 -13.68151 -13.33466 -13.23934 -12.94946 -12.81704 -12.57686 -12.48187 -12.08849 -12.03775 -11.93026 -11.40339 -11.22709 -11.05682 -11.02540 -10.86731 -10.82517 -10.71824 -10.55544 -10.34143 -9.99646 -9.87524 -9.14112 -8.80919 -8.64695 -8.08215 -7.35502 -7.13177 -6.27458 -4.48622 1.74995 2.56148 2.77228 3.03264 3.15082 3.17130 3.21548 3.73331 3.80590 4.00783 4.30788 4.47663 4.52509 4.68920 4.76024 4.83187 4.98534 5.10668 5.25497 5.34871 5.44596 5.53444 5.62532 5.69053 5.72078 5.76481 5.91735 6.01564 6.01889 6.05157 6.21119 6.36070 6.42102 6.52911 6.74299 6.75411 7.13444 7.19135 7.37606 7.48353 7.71649 7.75506 7.97264 8.08113 8.32312 8.56748 8.85465 8.96042 10.08202 10.37078 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.004819 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.709550 B = 5809.048454 C = 8112.898163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 H 0.081 0.919 4 C -0.125 4.125 5 C 0.104 3.896 6 N -0.582 5.582 7 C 0.512 3.488 8 O -0.530 6.530 9 C 0.472 3.528 10 O -0.377 6.377 11 N -0.633 5.633 12 C 0.365 3.635 13 C -0.347 4.347 14 C -0.036 4.036 15 C -0.298 4.298 16 C 0.272 3.728 17 C -0.422 4.422 18 H 0.084 0.916 19 C 0.062 3.938 20 N -0.665 5.665 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.263 1.263 25 N -0.474 5.474 26 C 0.021 3.979 27 C 0.091 3.909 28 H 0.085 0.915 29 F -0.204 7.204 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.273 0.727 42 H 0.181 0.819 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 6.520 -10.231 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 H 0.100 0.900 4 C -0.164 4.164 5 C -0.018 4.018 6 N -0.316 5.316 7 C 0.295 3.705 8 O -0.407 6.407 9 C 0.250 3.750 10 O -0.243 6.243 11 N -0.280 5.280 12 C 0.127 3.873 13 C -0.373 4.373 14 C -0.060 4.060 15 C -0.322 4.322 16 C 0.147 3.853 17 C -0.453 4.453 18 H 0.102 0.898 19 C -0.167 4.167 20 N -0.284 5.284 21 Si 0.721 3.279 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.187 1.187 25 N -0.193 5.193 26 C -0.101 4.101 27 C 0.054 3.946 28 H 0.103 0.897 29 F -0.185 7.185 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.249 0.751 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.197 0.803 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.314 7.435 -10.110 14.049 hybrid contribution 0.417 -0.300 0.142 0.533 sum -5.898 7.135 -9.969 13.604 Atomic orbital electron populations 1.21802 0.94126 1.02304 1.02258 1.21793 0.97036 1.00537 0.94659 0.90029 1.21945 0.94991 1.01716 0.97717 1.21752 0.93671 0.99501 0.86925 1.47775 1.42233 1.33976 1.07609 1.20678 0.79583 0.79906 0.90288 1.90695 1.52871 1.63297 1.33815 1.20169 0.83253 0.82688 0.88896 1.90711 1.47194 1.55067 1.31283 1.43003 1.33835 1.38388 1.12772 1.18537 0.92384 0.89458 0.86911 1.20504 1.10719 1.07071 0.98989 1.20587 0.96544 0.96368 0.92527 1.21671 1.06372 1.06556 0.97563 1.18344 0.89167 0.87335 0.90482 1.19605 1.19842 1.10063 0.95766 0.89802 1.26122 0.96645 0.96830 0.97096 1.70263 1.21586 1.11985 1.24594 0.86476 0.79047 0.79728 0.82611 1.19646 1.20094 1.18714 1.68607 1.25841 1.28737 0.96098 1.23852 0.93187 1.02999 0.90041 1.21713 0.94493 0.96745 0.81627 0.89685 1.92807 1.88887 1.83977 1.52791 0.92433 0.91887 0.92307 0.89878 0.90988 0.91042 0.88537 0.75131 0.88696 0.88326 0.88326 0.91580 0.80338 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.06 37.16 0.34 -1.03 16 2 C -0.12 -1.25 2.49 -90.58 -0.23 -1.47 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.16 5.36 -26.61 -0.14 -1.31 16 5 C 0.10 1.14 6.42 -3.71 -0.02 1.11 16 6 N -0.58 -8.33 2.98 -173.57 -0.52 -8.85 16 7 C 0.51 8.69 7.74 -11.62 -0.09 8.60 16 8 O -0.53 -9.40 15.96 5.49 0.09 -9.31 16 9 C 0.47 9.38 7.73 -11.62 -0.09 9.29 16 10 O -0.38 -8.44 8.90 5.49 0.05 -8.39 16 11 N -0.63 -12.65 5.36 -11.83 -0.06 -12.72 16 12 C 0.36 8.62 7.42 -155.08 -1.15 7.46 16 13 C -0.35 -7.59 9.95 -38.88 -0.39 -7.97 16 14 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 15 C -0.30 -7.21 9.83 -38.65 -0.38 -7.59 16 16 C 0.27 7.29 6.55 -85.00 -0.56 6.73 16 17 C -0.42 -11.08 9.13 -37.74 -0.34 -11.43 16 18 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 19 C 0.06 1.54 5.49 -17.35 -0.10 1.45 16 20 N -0.67 -17.08 9.05 55.55 0.50 -16.58 16 21 Si 0.90 18.56 29.56 -169.99 -5.03 13.53 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 N -0.47 -12.60 5.74 -10.28 -0.06 -12.66 16 26 C 0.02 0.31 5.98 -3.93 -0.02 0.28 16 27 C 0.09 1.24 3.43 -26.83 -0.09 1.14 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 F -0.20 -3.15 16.52 2.25 0.04 -3.11 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.62 7.77 -51.93 -0.40 0.22 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.10 7.05 -51.93 -0.37 0.74 16 37 H 0.41 7.05 8.21 -40.82 -0.33 6.71 16 38 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 39 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 40 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 41 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 42 H 0.18 3.30 3.77 -56.81 -0.21 3.09 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -29.50 354.38 -8.83 -38.33 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.52 Total: 10.34 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -3.67 Total: 4.08 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.14 Total: -50.81 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.14 Total: -17.70 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.50 -8.83 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890071074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.137 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds