Wall clock time and date at job start Tue Mar 31 2020 19:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46282 * 2 1 4 4 C 1.53039 * 109.46197 * 240.02243 * 2 1 3 5 5 C 1.53193 * 109.31522 * 178.61700 * 4 2 1 6 6 N 1.46925 * 108.77177 * 54.63426 * 5 4 2 7 7 C 1.34781 * 120.62714 * 126.37303 * 6 5 4 8 8 O 1.21354 * 119.99988 * 6.85524 * 7 6 5 9 9 C 1.49372 * 119.99923 * 186.85673 * 7 6 5 10 10 O 1.21353 * 119.99711 * 6.71007 * 9 7 6 11 11 N 1.34773 * 119.99797 * 186.70792 * 9 7 6 12 12 C 1.39119 * 119.99852 * 185.03086 * 11 9 7 13 13 C 1.39709 * 119.57881 * 174.80621 * 12 11 9 14 14 C 1.38647 * 119.49084 * 180.02562 * 13 12 11 15 15 C 1.38339 * 118.67522 * 359.71799 * 14 13 12 16 16 C 1.40604 * 119.13404 * 0.54696 * 15 14 13 17 17 C 1.41332 * 119.78563 * 179.72743 * 16 15 14 18 18 H 1.08007 * 120.00334 * 354.52668 * 17 16 15 19 19 C 1.40024 * 120.00249 * 174.53212 * 17 16 15 20 20 N 1.30744 * 119.99949 * 5.01889 * 19 17 16 21 21 Si 1.86800 * 120.00310 * 185.01965 * 19 17 16 22 22 H 1.48500 * 109.46939 * 94.99979 * 21 19 17 23 23 H 1.48503 * 109.47095 * 214.99713 * 21 19 17 24 24 H 1.48493 * 109.47372 * 334.99908 * 21 19 17 25 25 N 1.31935 * 119.57729 * 354.82664 * 12 11 9 26 26 C 1.46925 * 118.74379 * 306.64263 * 6 5 4 27 27 C 1.52764 * 109.00323 * 53.31110 * 26 6 5 28 28 H 1.09004 * 109.36000 * 65.50264 * 27 26 6 29 29 F 1.39903 * 109.58935 * 185.53919 * 27 26 6 30 30 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47485 * 299.97518 * 1 2 3 32 32 H 1.09002 * 109.46845 * 59.97430 * 1 2 3 33 33 H 1.09000 * 109.49495 * 58.66458 * 4 2 1 34 34 H 1.08999 * 109.49874 * 298.56683 * 4 2 1 35 35 H 1.09004 * 109.58313 * 294.85007 * 5 4 2 36 36 H 1.08995 * 109.70735 * 174.49221 * 5 4 2 37 37 H 0.96998 * 120.00440 * 5.03452 * 11 9 7 38 38 H 1.08003 * 120.25044 * 0.04200 * 13 12 11 39 39 H 1.08003 * 120.66168 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.43630 * 180.26284 * 15 14 13 41 41 H 0.96997 * 120.00809 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.59005 * 173.14711 * 26 6 5 43 43 H 1.08995 * 109.58504 * 293.57611 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5714 -0.6889 -1.2641 6 7 4.0678 -1.2489 0.0003 7 6 4.9613 -2.2579 0.0005 8 8 5.4574 -2.6293 -1.0429 9 6 5.3410 -2.9191 1.2850 10 8 4.7580 -2.6329 2.3101 11 7 6.3309 -3.8334 1.3054 12 6 6.6147 -4.5253 2.4785 13 6 7.5674 -5.5470 2.4633 14 6 7.8485 -6.2356 3.6333 15 6 7.1756 -5.8826 4.7893 16 6 6.2238 -4.8489 4.7388 17 6 5.5241 -4.4809 5.9103 18 1 5.6556 -5.0497 6.8191 19 6 4.6604 -3.3790 5.8930 20 7 4.4252 -2.7503 4.7710 21 14 3.8441 -2.8070 7.4729 22 1 4.6498 -1.7171 8.0798 23 1 2.4795 -2.3047 7.1713 24 1 3.7541 -3.9443 8.4234 25 7 5.9804 -4.2084 3.5911 26 6 3.5671 -0.6922 1.2645 27 6 2.0398 -0.7206 1.2502 28 1 1.6977 -1.7555 1.2386 29 9 1.5480 -0.0790 2.3921 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 1.6573 -0.2211 -2.1397 34 1 1.6978 -1.7559 -1.2380 35 1 3.9143 0.3407 -1.3673 36 1 3.9438 -1.2834 -2.0982 37 1 6.8455 -4.0092 0.5022 38 1 8.0812 -5.7983 1.5471 39 1 8.5812 -7.0291 3.6430 40 1 7.3755 -6.3973 5.7176 41 1 3.8271 -1.9867 4.7589 42 1 3.9345 -1.2904 2.0982 43 1 3.9096 0.3370 1.3716 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890071074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:00 Heat of formation + Delta-G solvation = -62.187435 kcal Electronic energy + Delta-G solvation = -29936.296619 eV Core-core repulsion = 25703.685930 eV Total energy + Delta-G solvation = -4232.610689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.70945 -42.06328 -40.50105 -39.13231 -38.64319 -36.27033 -35.14921 -34.62773 -32.27789 -31.71876 -31.10247 -29.56329 -27.65956 -26.35465 -24.45081 -24.18765 -23.35340 -22.54451 -21.57702 -20.68182 -19.67725 -18.63427 -18.25619 -17.79319 -17.10193 -16.98912 -16.51085 -16.45659 -16.41621 -16.28798 -15.80287 -15.63267 -15.47826 -15.22092 -14.69272 -14.52915 -14.19160 -13.99178 -13.83953 -13.76751 -13.60611 -13.33517 -12.91611 -12.75345 -12.74207 -12.55533 -12.44295 -12.32150 -12.16528 -11.95626 -11.76296 -11.68642 -11.63209 -11.41689 -10.92865 -10.18479 -9.94098 -9.92494 -9.12880 -8.93490 -8.10688 -6.41912 0.27100 1.01054 1.24820 1.26920 1.43118 1.53770 1.55219 2.26341 2.27225 2.35792 2.96977 3.21851 3.41689 3.51608 3.67287 3.74405 3.94833 4.01129 4.23880 4.32220 4.36631 4.45788 4.59153 4.61812 4.67003 4.75232 4.79712 4.80403 4.86258 4.94658 4.95797 4.98182 5.06876 5.22810 5.27239 5.32828 5.37005 5.63327 5.76412 5.87428 5.91521 6.07748 6.26605 6.44836 6.67700 6.78961 7.04002 7.25641 8.23758 8.53633 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.004819 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.709550 B = 5809.048454 C = 8112.898163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.117 4.117 5 C 0.099 3.901 6 N -0.572 5.572 7 C 0.519 3.481 8 O -0.539 6.539 9 C 0.461 3.539 10 O -0.404 6.404 11 N -0.628 5.628 12 C 0.346 3.654 13 C -0.340 4.340 14 C -0.033 4.033 15 C -0.321 4.321 16 C 0.239 3.761 17 C -0.460 4.460 18 H 0.086 0.914 19 C 0.019 3.981 20 N -0.692 5.692 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.257 1.257 25 N -0.503 5.503 26 C 0.023 3.977 27 C 0.090 3.910 28 H 0.070 0.930 29 F -0.217 7.217 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.425 0.575 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.273 0.727 42 H 0.147 0.853 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 7.375 -12.004 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 H 0.112 0.888 4 C -0.155 4.155 5 C -0.022 4.022 6 N -0.304 5.304 7 C 0.301 3.699 8 O -0.417 6.417 9 C 0.241 3.759 10 O -0.270 6.270 11 N -0.277 5.277 12 C 0.108 3.892 13 C -0.366 4.366 14 C -0.057 4.057 15 C -0.344 4.344 16 C 0.114 3.886 17 C -0.490 4.490 18 H 0.104 0.896 19 C -0.206 4.206 20 N -0.311 5.311 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.181 1.181 25 N -0.223 5.223 26 C -0.099 4.099 27 C 0.053 3.947 28 H 0.088 0.912 29 F -0.198 7.198 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.264 0.736 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.163 0.837 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.676 8.297 -11.927 15.990 hybrid contribution 0.599 -0.602 0.589 1.034 sum -6.077 7.695 -11.338 14.989 Atomic orbital electron populations 1.21790 0.93118 1.02317 1.03019 1.21766 0.97801 1.00681 0.92950 0.88781 1.21947 0.93453 1.01606 0.98515 1.22092 0.94899 1.00455 0.84719 1.47817 1.40985 1.32762 1.08880 1.20038 0.80473 0.80631 0.88716 1.90689 1.53640 1.63978 1.33364 1.20815 0.82754 0.82441 0.89934 1.90776 1.47832 1.55649 1.32776 1.43003 1.34259 1.38212 1.12238 1.18977 0.92666 0.90283 0.87269 1.20955 1.09535 1.05670 1.00411 1.21039 0.96392 0.96760 0.91556 1.21861 1.06761 1.06633 0.99095 1.18805 0.90259 0.88477 0.91044 1.19890 1.21530 1.11514 0.96113 0.89563 1.26880 0.96905 0.96553 1.00309 1.70410 1.22085 1.12232 1.26367 0.85385 0.77807 0.79180 0.78556 1.19250 1.19856 1.18066 1.68571 1.27141 1.29707 0.96890 1.23587 0.94215 1.02773 0.89285 1.21792 0.93507 0.96609 0.82840 0.91234 1.92779 1.88949 1.84111 1.53924 0.92846 0.92889 0.89777 0.86276 0.91850 0.88657 0.88565 0.73646 0.85247 0.84353 0.87414 0.91649 0.83686 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.06 71.98 0.65 -1.69 16 2 C -0.11 -2.06 2.49 -10.77 -0.03 -2.09 16 3 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.12 -1.81 5.36 30.67 0.16 -1.64 16 5 C 0.10 1.91 6.42 86.36 0.55 2.46 16 6 N -0.57 -15.88 2.98 -821.41 -2.45 -18.32 16 7 C 0.52 17.51 7.74 87.24 0.68 18.18 16 8 O -0.54 -18.58 15.96 -3.26 -0.05 -18.63 16 9 C 0.46 18.83 7.73 87.25 0.67 19.50 16 10 O -0.40 -18.94 8.90 -3.26 -0.03 -18.97 16 11 N -0.63 -25.38 5.36 -309.70 -1.66 -27.04 16 12 C 0.35 16.52 7.42 133.30 0.99 17.51 16 13 C -0.34 -14.44 9.95 22.72 0.23 -14.21 16 14 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 15 C -0.32 -15.66 9.83 22.87 0.22 -15.44 16 16 C 0.24 13.30 6.55 40.20 0.26 13.57 16 17 C -0.46 -25.13 9.13 23.46 0.21 -24.92 16 18 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 19 C 0.02 1.00 5.49 85.29 0.47 1.47 16 20 N -0.69 -37.19 9.05 21.84 0.20 -36.99 16 21 Si 0.97 39.34 29.56 68.60 2.03 41.37 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 25 N -0.50 -27.72 5.74 -186.42 -1.07 -28.79 16 26 C 0.02 0.70 5.98 86.22 0.52 1.21 16 27 C 0.09 2.41 3.43 30.53 0.10 2.51 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 F -0.22 -6.76 16.52 44.97 0.74 -6.02 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.97 7.77 -2.39 -0.02 0.95 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.94 7.05 -2.39 -0.02 1.92 16 37 H 0.43 14.33 8.21 -92.71 -0.76 13.57 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 40 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 41 H 0.27 13.75 8.29 -92.71 -0.77 12.98 16 42 H 0.15 5.63 3.77 -79.58 -0.30 5.33 16 43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -66.77 354.38 3.65 -63.13 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.01 Total: 35.04 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.93 Total: 15.24 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.98 Total: -111.16 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.08 Total: -37.60 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.74 Total: -6.02 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -66.77 3.65 -63.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890071074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.940 kcal (2) G-P(sol) polarization free energy of solvation -66.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds