Wall clock time and date at job start Tue Mar 31 2020 19:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.21344 * 2 1 4 4 C 1.53470 * 109.10190 * 119.44312 * 2 1 3 5 5 N 1.47268 * 107.93185 * 167.14896 * 4 2 1 6 6 C 1.34776 * 121.35153 * 118.51395 * 5 4 2 7 7 O 1.21375 * 119.99968 * 1.72497 * 6 5 4 8 8 C 1.49307 * 120.00226 * 181.72769 * 6 5 4 9 9 O 1.21402 * 120.00086 * 353.81518 * 8 6 5 10 10 N 1.34778 * 120.00277 * 173.81727 * 8 6 5 11 11 C 1.40295 * 119.99998 * 179.97438 * 10 8 6 12 12 C 1.40719 * 126.10131 * 359.96681 * 11 10 8 13 13 N 1.30871 * 108.37628 * 179.78729 * 12 11 10 14 14 N 1.40063 * 108.43731 * 0.37629 * 13 12 11 15 15 C 1.37293 * 126.05711 * 179.87538 * 14 13 12 16 16 H 1.08002 * 119.99753 * 179.68770 * 15 14 13 17 17 C 1.39012 * 120.00099 * 359.42130 * 15 14 13 18 18 N 1.31278 * 119.99593 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46764 * 89.99677 * 19 17 15 21 21 H 1.48497 * 109.47091 * 209.99930 * 19 17 15 22 22 H 1.48500 * 109.46926 * 329.99898 * 19 17 15 23 23 C 1.35785 * 126.09810 * 179.97438 * 11 10 8 24 24 C 1.47043 * 117.29557 * 298.24418 * 5 4 2 25 25 C 1.50435 * 108.89106 * 42.98745 * 24 5 4 26 26 O 1.21283 * 118.48881 * 167.27098 * 25 24 5 27 27 N 1.33377 * 123.02188 * 347.28987 * 25 24 5 28 28 C 1.46503 * 117.70204 * 184.29665 * 27 25 24 29 29 H 1.09000 * 109.47406 * 179.38733 * 1 2 3 30 30 H 1.09007 * 109.46956 * 299.38238 * 1 2 3 31 31 H 1.08994 * 109.47274 * 59.38079 * 1 2 3 32 32 H 1.09000 * 109.85185 * 47.55698 * 4 2 1 33 33 H 1.08995 * 109.84293 * 286.74416 * 4 2 1 34 34 H 0.96997 * 120.00102 * 0.02562 * 10 8 6 35 35 H 1.08000 * 125.81270 * 0.02562 * 12 11 10 36 36 H 0.97005 * 119.99859 * 180.02562 * 18 17 15 37 37 H 1.08002 * 126.25204 * 359.95336 * 23 11 10 38 38 H 1.09006 * 109.56839 * 162.81043 * 24 5 4 39 39 H 1.09002 * 109.56793 * 283.16133 * 24 5 4 40 40 H 1.08995 * 109.47493 * 0.02562 * 28 27 25 41 41 H 1.09007 * 109.46936 * 120.00374 * 28 27 25 42 42 H 1.08998 * 109.46914 * 240.00010 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0322 -0.7129 1.2629 5 7 3.4714 -0.9751 1.0935 6 6 4.3845 -0.4417 1.9291 7 8 4.0245 0.2456 2.8625 8 6 5.8388 -0.6961 1.7066 9 8 6.1941 -1.4723 0.8434 10 7 6.7572 -0.0642 2.4641 11 6 8.1237 -0.3037 2.2553 12 6 8.6760 -1.1734 1.2968 13 7 9.9798 -1.1276 1.4009 14 7 10.3110 -0.2379 2.4306 15 6 11.5801 0.0795 2.8473 16 1 11.7234 0.7857 3.6518 17 6 12.6803 -0.5122 2.2376 18 7 12.5057 -1.3750 1.2636 19 14 14.4070 -0.0798 2.8041 20 1 14.8199 -1.0088 3.8865 21 1 15.3478 -0.2015 1.6616 22 1 14.4258 1.3146 3.3144 23 6 9.1492 0.2622 2.9422 24 6 3.8713 -1.8475 -0.0206 25 6 3.0778 -1.4720 -1.2422 26 8 3.4257 -1.9144 -2.3166 27 7 2.0094 -0.6748 -1.1983 28 6 1.2663 -0.4627 -2.4429 29 1 -0.3634 -1.0276 -0.0110 30 1 -0.3633 0.5042 0.8955 31 1 -0.3633 0.5234 -0.8843 32 1 1.4996 -1.6549 1.3928 33 1 1.8742 -0.0773 2.1341 34 1 6.4733 0.5557 3.1540 35 1 8.1190 -1.7734 0.5924 36 1 13.2734 -1.7882 0.8383 37 1 9.0613 0.9777 3.7464 38 1 4.9348 -1.7180 -0.2221 39 1 3.6712 -2.8869 0.2396 40 1 1.7377 -1.0260 -3.2481 41 1 0.2386 -0.8031 -2.3151 42 1 1.2692 0.5986 -2.6914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256614930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:07 Heat of formation + Delta-G solvation = 20.004389 kcal Electronic energy + Delta-G solvation = -28753.514638 eV Core-core repulsion = 24544.388016 eV Total energy + Delta-G solvation = -4209.126622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31962 -40.22722 -39.44369 -38.16506 -37.06610 -35.67042 -34.26583 -33.23443 -31.92637 -30.37914 -28.98277 -28.26033 -27.88287 -26.07508 -25.00181 -23.35981 -22.82695 -21.16607 -20.27385 -19.59175 -19.04500 -18.13278 -17.54648 -17.39932 -16.44752 -16.31161 -16.18541 -15.62312 -15.55904 -15.18487 -15.14360 -14.37861 -14.30502 -14.02031 -13.76312 -13.57870 -13.53487 -13.16309 -13.03293 -12.86831 -12.56288 -12.40983 -12.21225 -11.94338 -11.78274 -11.75092 -11.47690 -11.32305 -11.14375 -10.94567 -10.57899 -10.41873 -10.36859 -9.28799 -9.13824 -8.98437 -8.94125 -8.88405 -8.18009 -6.85602 -6.64084 -4.32043 1.44319 2.16284 2.42846 2.70762 2.89928 3.01718 3.07050 3.18036 3.48052 3.62439 3.79274 4.08913 4.22398 4.30183 4.40971 4.52454 4.63720 4.84784 4.94649 4.98694 5.04526 5.14215 5.19135 5.24425 5.26586 5.39923 5.54478 5.65416 5.66862 5.91847 6.09806 6.15176 6.28899 6.64211 6.78520 6.83866 6.92205 7.11486 7.14812 7.50856 7.76069 7.91577 7.96504 8.12102 8.37508 8.62709 9.26112 9.54726 10.31503 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.002402 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.353270 B =11655.183453 C =12405.547997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.098 3.902 5 N -0.594 5.594 6 C 0.524 3.476 7 O -0.522 6.522 8 C 0.484 3.516 9 O -0.514 6.514 10 N -0.574 5.574 11 C -0.075 4.075 12 C -0.023 4.023 13 N -0.260 5.260 14 N -0.136 5.136 15 C -0.321 4.321 16 H 0.119 0.881 17 C 0.046 3.954 18 N -0.765 5.765 19 Si 0.936 3.064 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.263 1.263 23 C -0.076 4.076 24 C 0.059 3.941 25 C 0.510 3.490 26 O -0.540 6.540 27 N -0.607 5.607 28 C 0.067 3.933 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.410 0.590 35 H 0.179 0.821 36 H 0.277 0.723 37 H 0.150 0.850 38 H 0.183 0.817 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.538 3.187 0.013 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.098 0.902 4 C -0.024 4.024 5 N -0.329 5.329 6 C 0.307 3.693 7 O -0.397 6.397 8 C 0.265 3.735 9 O -0.393 6.393 10 N -0.215 5.215 11 C -0.181 4.181 12 C -0.199 4.199 13 N -0.091 5.091 14 N 0.097 4.903 15 C -0.454 4.454 16 H 0.136 0.864 17 C -0.172 4.172 18 N -0.391 5.391 19 Si 0.760 3.240 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.187 1.187 23 C -0.228 4.228 24 C -0.065 4.065 25 C 0.298 3.702 26 O -0.417 6.417 27 N -0.341 5.341 28 C -0.076 4.076 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.246 0.754 35 H 0.196 0.804 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.199 0.801 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.002 2.197 -1.234 20.160 hybrid contribution -0.470 0.876 1.005 1.414 sum -20.473 3.073 -0.229 20.703 Atomic orbital electron populations 1.22147 0.93211 1.03200 1.03466 1.21421 0.95310 0.96820 0.84191 0.90234 1.22252 0.79911 1.02009 0.98248 1.47957 1.06314 1.48710 1.29953 1.20232 0.87311 0.79634 0.82077 1.90739 1.81411 1.37810 1.29759 1.19538 0.85993 0.83831 0.84105 1.90341 1.79537 1.36558 1.32882 1.42124 1.04117 1.41250 1.34004 1.17238 0.80741 1.11809 1.08277 1.24172 0.92141 1.02237 1.01302 1.78288 1.11401 1.12329 1.07040 1.44589 1.03938 1.23068 1.18673 1.19941 0.78717 1.27033 1.19676 0.86376 1.25680 1.01023 0.95181 0.95285 1.70202 1.32113 1.19811 1.17015 0.85795 0.79895 0.79543 0.78763 1.19497 1.20001 1.18718 1.21300 0.85724 1.09170 1.06600 1.23280 1.06301 0.95175 0.81712 1.20561 0.80119 0.78060 0.91439 1.90743 1.67505 1.53973 1.29459 1.47292 1.28605 1.47950 1.10242 1.21792 0.96308 1.01909 0.87555 0.91569 0.90529 0.91210 0.89692 0.86699 0.75446 0.80431 0.91257 0.83302 0.80089 0.87650 0.88988 0.91958 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 8.26 37.16 0.31 -0.43 16 2 C 0.13 0.96 3.57 -68.15 -0.24 0.72 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.10 0.82 5.86 -3.38 -0.02 0.80 16 5 N -0.59 -7.06 2.97 -174.42 -0.52 -7.57 16 6 C 0.52 7.50 7.78 -11.65 -0.09 7.41 16 7 O -0.52 -7.85 15.97 5.48 0.09 -7.76 16 8 C 0.48 8.28 7.77 -11.65 -0.09 8.18 16 9 O -0.51 -9.71 10.23 5.45 0.06 -9.65 16 10 N -0.57 -10.26 5.45 -10.46 -0.06 -10.32 16 11 C -0.07 -1.66 6.90 -83.92 -0.58 -2.24 16 12 C -0.02 -0.57 10.84 -17.02 -0.18 -0.76 16 13 N -0.26 -7.33 10.39 30.81 0.32 -7.01 16 14 N -0.14 -3.64 3.73 -11.40 -0.04 -3.68 16 15 C -0.32 -8.26 10.25 -14.82 -0.15 -8.41 16 16 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 17 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 18 N -0.77 -20.88 11.81 55.50 0.66 -20.22 16 19 Si 0.94 18.46 29.55 -169.99 -5.02 13.44 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 C -0.08 -1.74 11.50 -16.38 -0.19 -1.93 16 24 C 0.06 0.75 6.13 -5.03 -0.03 0.72 16 25 C 0.51 6.76 7.58 -11.74 -0.09 6.67 16 26 O -0.54 -9.04 15.97 5.55 0.09 -8.95 16 27 N -0.61 -6.12 3.12 -174.80 -0.54 -6.67 16 28 C 0.07 0.55 9.36 59.85 0.56 1.11 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.07 0.28 6.90 -51.93 -0.36 -0.07 16 32 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.11 0.92 7.06 -51.93 -0.37 0.56 16 34 H 0.41 6.24 8.31 -40.82 -0.34 5.90 16 35 H 0.18 4.32 5.92 -52.49 -0.31 4.01 16 36 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 38 H 0.18 2.82 4.35 -54.89 -0.24 2.59 16 39 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.09 0.95 6.59 -51.93 -0.34 0.61 16 41 H 0.06 0.37 6.90 -51.93 -0.36 0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -33.48 350.85 -5.40 -38.89 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -4.82 Total: 11.29 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -0.90 Total: 12.92 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.19 Total: -55.46 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: 0.23 Total: -26.36 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.48 -5.40 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256614930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.891 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds