Wall clock time and date at job start Tue Mar 31 2020 19:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.21344 * 2 1 4 4 C 1.53470 * 109.10190 * 119.44312 * 2 1 3 5 5 N 1.47268 * 107.93185 * 167.14896 * 4 2 1 6 6 C 1.34776 * 121.35153 * 118.51395 * 5 4 2 7 7 O 1.21375 * 119.99968 * 1.72497 * 6 5 4 8 8 C 1.49307 * 120.00226 * 181.72769 * 6 5 4 9 9 O 1.21402 * 120.00086 * 353.81518 * 8 6 5 10 10 N 1.34778 * 120.00277 * 173.81727 * 8 6 5 11 11 C 1.40295 * 119.99998 * 179.97438 * 10 8 6 12 12 C 1.40719 * 126.10131 * 359.96681 * 11 10 8 13 13 N 1.30871 * 108.37628 * 179.78729 * 12 11 10 14 14 N 1.40063 * 108.43731 * 0.37629 * 13 12 11 15 15 C 1.37293 * 126.05711 * 179.87538 * 14 13 12 16 16 H 1.08002 * 119.99753 * 179.68770 * 15 14 13 17 17 C 1.39012 * 120.00099 * 359.42130 * 15 14 13 18 18 N 1.31278 * 119.99593 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46764 * 89.99677 * 19 17 15 21 21 H 1.48497 * 109.47091 * 209.99930 * 19 17 15 22 22 H 1.48500 * 109.46926 * 329.99898 * 19 17 15 23 23 C 1.35785 * 126.09810 * 179.97438 * 11 10 8 24 24 C 1.47043 * 117.29557 * 298.24418 * 5 4 2 25 25 C 1.50435 * 108.89106 * 42.98745 * 24 5 4 26 26 O 1.21283 * 118.48881 * 167.27098 * 25 24 5 27 27 N 1.33377 * 123.02188 * 347.28987 * 25 24 5 28 28 C 1.46503 * 117.70204 * 184.29665 * 27 25 24 29 29 H 1.09000 * 109.47406 * 179.38733 * 1 2 3 30 30 H 1.09007 * 109.46956 * 299.38238 * 1 2 3 31 31 H 1.08994 * 109.47274 * 59.38079 * 1 2 3 32 32 H 1.09000 * 109.85185 * 47.55698 * 4 2 1 33 33 H 1.08995 * 109.84293 * 286.74416 * 4 2 1 34 34 H 0.96997 * 120.00102 * 0.02562 * 10 8 6 35 35 H 1.08000 * 125.81270 * 0.02562 * 12 11 10 36 36 H 0.97005 * 119.99859 * 180.02562 * 18 17 15 37 37 H 1.08002 * 126.25204 * 359.95336 * 23 11 10 38 38 H 1.09006 * 109.56839 * 162.81043 * 24 5 4 39 39 H 1.09002 * 109.56793 * 283.16133 * 24 5 4 40 40 H 1.08995 * 109.47493 * 0.02562 * 28 27 25 41 41 H 1.09007 * 109.46936 * 120.00374 * 28 27 25 42 42 H 1.08998 * 109.46914 * 240.00010 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0322 -0.7129 1.2629 5 7 3.4714 -0.9751 1.0935 6 6 4.3845 -0.4417 1.9291 7 8 4.0245 0.2456 2.8625 8 6 5.8388 -0.6961 1.7066 9 8 6.1941 -1.4723 0.8434 10 7 6.7572 -0.0642 2.4641 11 6 8.1237 -0.3037 2.2553 12 6 8.6760 -1.1734 1.2968 13 7 9.9798 -1.1276 1.4009 14 7 10.3110 -0.2379 2.4306 15 6 11.5801 0.0795 2.8473 16 1 11.7234 0.7857 3.6518 17 6 12.6803 -0.5122 2.2376 18 7 12.5057 -1.3750 1.2636 19 14 14.4070 -0.0798 2.8041 20 1 14.8199 -1.0088 3.8865 21 1 15.3478 -0.2015 1.6616 22 1 14.4258 1.3146 3.3144 23 6 9.1492 0.2622 2.9422 24 6 3.8713 -1.8475 -0.0206 25 6 3.0778 -1.4720 -1.2422 26 8 3.4257 -1.9144 -2.3166 27 7 2.0094 -0.6748 -1.1983 28 6 1.2663 -0.4627 -2.4429 29 1 -0.3634 -1.0276 -0.0110 30 1 -0.3633 0.5042 0.8955 31 1 -0.3633 0.5234 -0.8843 32 1 1.4996 -1.6549 1.3928 33 1 1.8742 -0.0773 2.1341 34 1 6.4733 0.5557 3.1540 35 1 8.1190 -1.7734 0.5924 36 1 13.2734 -1.7882 0.8383 37 1 9.0613 0.9777 3.7464 38 1 4.9348 -1.7180 -0.2221 39 1 3.6712 -2.8869 0.2396 40 1 1.7377 -1.0260 -3.2481 41 1 0.2386 -0.8031 -2.3151 42 1 1.2692 0.5986 -2.6914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256614930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:07 Heat of formation + Delta-G solvation = -5.361879 kcal Electronic energy + Delta-G solvation = -28754.614602 eV Core-core repulsion = 24544.388016 eV Total energy + Delta-G solvation = -4210.226586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.45807 -41.68140 -40.89789 -39.53418 -38.04645 -36.79996 -35.76817 -34.96567 -32.67066 -32.29957 -30.11493 -29.74657 -28.72799 -27.35018 -26.50403 -24.51767 -23.66753 -22.92785 -21.62665 -21.29078 -20.10084 -19.45660 -18.98946 -18.42337 -17.62217 -17.44002 -17.31782 -17.25232 -16.79969 -16.56706 -16.30188 -15.71898 -15.66232 -15.35061 -15.06483 -14.93864 -14.65753 -14.44233 -14.17642 -13.68234 -13.53382 -13.48977 -13.24064 -13.05235 -12.93531 -12.90691 -12.79102 -12.52789 -12.41054 -12.27315 -12.09259 -11.97531 -11.49636 -11.08128 -10.86456 -10.29205 -10.14784 -10.06358 -9.81418 -8.64075 -8.48995 -6.26942 0.15807 1.04602 1.28746 1.39472 1.41365 1.58624 1.69439 1.84140 1.97912 2.08901 2.29298 2.49253 2.78641 3.07787 3.27289 3.31456 3.55643 3.94548 4.01952 4.19610 4.34939 4.38965 4.44800 4.51846 4.56221 4.58379 4.66428 4.81014 4.88331 4.90448 4.95136 4.98395 5.03160 5.23348 5.25360 5.37049 5.40121 5.66671 5.91191 6.14024 6.24408 6.33031 6.59615 6.69597 6.93716 7.02040 7.41014 7.62706 8.50043 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.002402 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.353270 B =11655.183453 C =12405.547997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 H 0.079 0.921 4 C 0.095 3.905 5 N -0.584 5.584 6 C 0.534 3.466 7 O -0.525 6.525 8 C 0.484 3.516 9 O -0.531 6.531 10 N -0.574 5.574 11 C -0.058 4.058 12 C -0.046 4.046 13 N -0.309 5.309 14 N -0.163 5.163 15 C -0.352 4.352 16 H 0.143 0.857 17 C -0.005 4.005 18 N -0.821 5.821 19 Si 1.019 2.981 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.244 1.244 23 C -0.072 4.072 24 C 0.063 3.937 25 C 0.506 3.494 26 O -0.585 6.585 27 N -0.600 5.600 28 C 0.064 3.936 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.425 0.575 35 H 0.176 0.824 36 H 0.278 0.722 37 H 0.190 0.810 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.034 4.824 1.748 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.097 0.903 4 C -0.026 4.026 5 N -0.318 5.318 6 C 0.316 3.684 7 O -0.401 6.401 8 C 0.266 3.734 9 O -0.411 6.411 10 N -0.218 5.218 11 C -0.164 4.164 12 C -0.221 4.221 13 N -0.140 5.140 14 N 0.069 4.931 15 C -0.483 4.483 16 H 0.160 0.840 17 C -0.218 4.218 18 N -0.449 5.449 19 Si 0.838 3.162 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.167 1.167 23 C -0.223 4.223 24 C -0.061 4.061 25 C 0.295 3.705 26 O -0.466 6.466 27 N -0.332 5.332 28 C -0.078 4.078 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.144 0.856 34 H 0.263 0.737 35 H 0.193 0.807 36 H 0.087 0.913 37 H 0.207 0.793 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.598 3.875 0.528 22.934 hybrid contribution 0.005 0.383 0.427 0.574 sum -22.593 4.258 0.955 23.011 Atomic orbital electron populations 1.22128 0.90146 1.04037 1.04927 1.21649 0.97594 0.96123 0.82590 0.90304 1.22632 0.77251 1.03659 0.99081 1.47969 1.07642 1.47518 1.28700 1.19515 0.85991 0.80183 0.82668 1.90748 1.81041 1.38270 1.30043 1.20253 0.87470 0.82653 0.82984 1.90388 1.80517 1.36915 1.33288 1.42051 1.02447 1.42290 1.35052 1.17251 0.82794 1.09909 1.06496 1.24275 0.91900 1.03469 1.02502 1.78178 1.12883 1.14132 1.08844 1.44853 1.05207 1.23862 1.19178 1.20656 0.78947 1.28022 1.20713 0.84006 1.26885 1.05607 0.94434 0.94829 1.70377 1.33443 1.21894 1.19143 0.84591 0.73503 0.80097 0.78034 1.18856 1.20249 1.16722 1.22022 0.84753 1.08811 1.06749 1.23035 1.04713 0.96266 0.82125 1.20556 0.80834 0.78458 0.90686 1.90727 1.68968 1.56082 1.30788 1.47427 1.27478 1.46470 1.11875 1.21937 0.97222 1.02590 0.86022 0.91007 0.88613 0.90291 0.87314 0.85650 0.73697 0.80693 0.91265 0.79350 0.82893 0.85980 0.91479 0.88941 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.26 71.98 0.59 -0.14 16 2 C 0.12 1.48 3.57 45.31 0.16 1.64 16 3 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 4 C 0.09 1.26 5.86 86.39 0.51 1.77 16 5 N -0.58 -12.79 2.97 -824.10 -2.45 -15.24 16 6 C 0.53 14.42 7.78 87.22 0.68 15.10 16 7 O -0.52 -14.47 15.97 -3.32 -0.05 -14.52 16 8 C 0.48 16.40 7.77 87.22 0.68 17.07 16 9 O -0.53 -20.60 10.23 -3.41 -0.03 -20.64 16 10 N -0.57 -20.12 5.45 -305.33 -1.66 -21.78 16 11 C -0.06 -2.60 6.90 37.82 0.26 -2.34 16 12 C -0.05 -2.41 10.84 85.44 0.93 -1.48 16 13 N -0.31 -18.20 10.39 -56.44 -0.59 -18.78 16 14 N -0.16 -8.88 3.73 -189.97 -0.71 -9.59 16 15 C -0.35 -18.29 10.25 84.02 0.86 -17.42 16 16 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 17 C -0.01 -0.28 5.50 84.96 0.47 0.19 16 18 N -0.82 -46.72 11.81 21.67 0.26 -46.47 16 19 Si 1.02 37.99 29.55 68.60 2.03 40.02 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 H -0.28 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 23 C -0.07 -3.28 11.50 83.41 0.96 -2.32 16 24 C 0.06 1.58 6.13 85.45 0.52 2.10 16 25 C 0.51 13.24 7.58 87.79 0.67 13.90 16 26 O -0.59 -20.14 15.97 -3.04 -0.05 -20.19 16 27 N -0.60 -10.97 3.12 -826.13 -2.57 -13.54 16 28 C 0.06 0.94 9.36 127.77 1.20 2.13 16 29 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.08 0.29 6.90 -2.39 -0.02 0.27 16 32 H 0.11 1.02 8.09 -2.39 -0.02 1.00 16 33 H 0.13 1.52 7.06 -2.39 -0.02 1.50 16 34 H 0.42 12.21 8.31 -92.71 -0.77 11.44 16 35 H 0.18 9.02 5.92 -2.91 -0.02 9.00 16 36 H 0.28 14.53 8.31 -92.70 -0.77 13.76 16 37 H 0.19 6.74 8.06 -2.91 -0.02 6.71 16 38 H 0.15 4.93 4.35 -49.36 -0.21 4.71 16 39 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.07 1.37 6.59 -2.39 -0.02 1.35 16 41 H 0.09 0.81 6.90 -2.38 -0.02 0.79 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -77.41 350.85 2.76 -74.65 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.12 Total: 35.88 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 8.48 Total: 30.21 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -7.73 Total: -125.40 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.14 Total: -55.35 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -77.41 2.76 -74.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256614930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.288 kcal (2) G-P(sol) polarization free energy of solvation -77.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds