Wall clock time and date at job start Tue Mar 31 2020 19:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.45984 * 2 1 4 4 C 1.53832 * 109.55795 * 240.03515 * 2 1 3 5 5 C 1.51188 * 108.32962 * 320.16236 * 4 2 1 6 6 O 1.21288 * 119.77223 * 108.78259 * 5 4 2 7 7 N 1.33631 * 120.45976 * 288.51167 * 5 4 2 8 8 C 1.46921 * 120.62578 * 359.97438 * 7 5 4 9 9 C 1.53217 * 108.82577 * 71.96336 * 8 7 5 10 10 N 1.46071 * 109.72156 * 278.41006 * 9 8 7 11 11 C 1.34776 * 118.73180 * 243.83283 * 10 9 8 12 12 O 1.21371 * 119.99856 * 173.49335 * 11 10 9 13 13 C 1.49311 * 119.99958 * 353.49077 * 11 10 9 14 14 O 1.21397 * 119.99810 * 5.96323 * 13 11 10 15 15 N 1.34776 * 119.99993 * 185.96136 * 13 11 10 16 16 C 1.40290 * 120.00172 * 180.02562 * 15 13 11 17 17 C 1.40722 * 126.09786 * 359.69529 * 16 15 13 18 18 N 1.30871 * 108.37806 * 179.85160 * 17 16 15 19 19 N 1.40065 * 108.43514 * 0.40216 * 18 17 16 20 20 C 1.37294 * 126.05950 * 179.73699 * 19 18 17 21 21 H 1.07997 * 120.00491 * 179.97438 * 20 19 18 22 22 C 1.39013 * 119.99765 * 0.02562 * 20 19 18 23 23 N 1.31280 * 120.00091 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99791 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47230 * 60.00169 * 24 22 20 26 26 H 1.48508 * 109.46819 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47177 * 299.99658 * 24 22 20 28 28 C 1.35786 * 126.10167 * 180.02562 * 16 15 13 29 29 H 1.09000 * 109.47249 * 300.01973 * 1 2 3 30 30 H 1.09003 * 109.47293 * 60.02276 * 1 2 3 31 31 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.72521 * 200.52796 * 4 2 1 33 33 H 1.09005 * 109.78525 * 79.82653 * 4 2 1 34 34 H 0.97001 * 119.69162 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.58010 * 191.76928 * 8 7 5 36 36 H 1.09004 * 109.57310 * 312.16215 * 8 7 5 37 37 H 1.08998 * 109.42910 * 38.48777 * 9 8 7 38 38 H 1.09000 * 109.43390 * 158.33179 * 9 8 7 39 39 H 0.97003 * 120.00023 * 359.97438 * 15 13 11 40 40 H 1.08005 * 125.81031 * 359.97438 * 17 16 15 41 41 H 0.96998 * 120.00476 * 179.97438 * 23 22 20 42 42 H 1.07995 * 126.24919 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0450 -0.7240 -1.2558 5 6 1.1657 -1.9285 -1.5043 6 8 0.3986 -1.9307 -2.4438 7 7 1.2316 -2.9931 -0.6993 8 6 2.1587 -3.0133 0.4404 9 6 1.6357 -2.0603 1.5201 10 7 2.0173 -0.6886 1.1937 11 6 2.8511 -0.0328 2.0251 12 8 3.2769 1.0617 1.7185 13 6 3.2508 -0.6525 3.3233 14 8 2.9136 -1.7896 3.5823 15 7 3.9859 0.0504 4.2076 16 6 4.3620 -0.5321 5.4272 17 6 4.0390 -1.8316 5.8598 18 7 4.5669 -2.0157 7.0431 19 7 5.2372 -0.8438 7.4163 20 6 5.9145 -0.6400 8.5930 21 1 6.3990 0.3068 8.7802 22 6 5.9776 -1.6529 9.5430 23 7 5.3891 -2.8041 9.3152 24 14 6.8997 -1.3759 11.1437 25 1 6.2909 -0.2358 11.8748 26 1 6.8179 -2.6001 11.9804 27 1 8.3229 -1.0716 10.8488 28 6 5.0973 0.0596 6.4034 29 1 -0.3634 0.5141 0.8898 30 1 -0.3634 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 3.0735 -1.0482 -1.0978 33 1 1.9978 -0.0533 -2.1138 34 1 0.6621 -3.7597 -0.8688 35 1 2.2197 -4.0240 0.8437 36 1 3.1464 -2.6882 0.1135 37 1 0.5493 -2.1319 1.5716 38 1 2.0625 -2.3356 2.4845 39 1 4.2557 0.9588 4.0004 40 1 3.4565 -2.5548 5.3082 41 1 5.4334 -3.5110 9.9779 42 1 5.4977 1.0624 6.3822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326016708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:04 Heat of formation + Delta-G solvation = 18.116248 kcal Electronic energy + Delta-G solvation = -29007.869396 eV Core-core repulsion = 24798.660898 eV Total energy + Delta-G solvation = -4209.208498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39851 -40.22252 -39.48886 -38.22821 -36.99643 -34.98860 -34.62643 -33.35578 -32.63331 -30.43725 -28.89852 -28.23832 -28.15286 -25.69359 -24.49311 -24.13677 -21.67456 -21.18945 -20.31309 -19.68513 -19.38151 -17.96838 -17.66269 -17.19995 -17.05912 -16.48282 -16.13085 -15.62083 -15.39905 -15.28820 -15.17989 -14.65263 -14.18836 -14.10118 -13.81330 -13.40829 -13.31000 -13.18762 -12.92896 -12.86299 -12.59981 -12.44166 -12.06369 -11.88638 -11.80415 -11.50921 -11.37590 -11.34544 -11.02172 -10.84445 -10.63784 -10.48789 -10.01872 -9.65561 -9.33745 -9.01346 -8.95683 -8.59709 -8.24619 -6.92558 -6.69547 -4.37724 1.42596 2.32273 2.40383 2.86944 2.98233 3.02127 3.06944 3.15016 3.51870 3.57312 3.76352 4.17029 4.23466 4.38090 4.52080 4.67156 4.77574 4.85096 4.89365 4.90556 4.94049 5.06281 5.17317 5.38548 5.47167 5.61091 5.69002 5.85287 5.99764 6.09043 6.20596 6.22519 6.53369 6.60543 6.77713 6.94256 6.97745 7.01608 7.08241 7.56318 7.71533 7.92605 7.98964 8.06176 8.32972 8.56845 9.19776 9.48130 10.25930 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033223 B = 0.002346 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.576443 B =11930.284253 C =12496.172967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.116 0.884 4 C -0.151 4.151 5 C 0.522 3.478 6 O -0.555 6.555 7 N -0.727 5.727 8 C 0.095 3.905 9 C -0.002 4.002 10 N -0.578 5.578 11 C 0.513 3.487 12 O -0.525 6.525 13 C 0.486 3.514 14 O -0.508 6.508 15 N -0.570 5.570 16 C -0.077 4.077 17 C -0.023 4.023 18 N -0.261 5.261 19 N -0.135 5.135 20 C -0.321 4.321 21 H 0.119 0.881 22 C 0.047 3.953 23 N -0.766 5.766 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.076 4.076 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.198 0.802 39 H 0.412 0.588 40 H 0.179 0.821 41 H 0.277 0.723 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 2.413 -13.382 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.134 0.866 4 C -0.192 4.192 5 C 0.309 3.691 6 O -0.433 6.433 7 N -0.379 5.379 8 C -0.029 4.029 9 C -0.123 4.123 10 N -0.311 5.311 11 C 0.296 3.704 12 O -0.401 6.401 13 C 0.269 3.731 14 O -0.389 6.389 15 N -0.210 5.210 16 C -0.183 4.183 17 C -0.198 4.198 18 N -0.091 5.091 19 N 0.099 4.901 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.392 5.392 24 Si 0.760 3.240 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.190 1.190 28 C -0.228 4.228 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.235 0.765 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.212 0.788 39 H 0.247 0.753 40 H 0.196 0.804 41 H 0.088 0.912 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.006 1.344 -12.732 13.746 hybrid contribution 0.145 0.832 -0.336 0.909 sum -4.861 2.176 -13.068 14.112 Atomic orbital electron populations 1.22201 0.93932 1.02966 1.03159 1.21162 0.94790 0.98018 0.82512 0.86567 1.22528 1.00270 0.96099 1.00268 1.20435 0.83071 0.84342 0.81226 1.90751 1.40122 1.81894 1.30562 1.46121 1.42718 1.18918 1.30181 1.22237 0.92985 1.01819 0.85905 1.24450 1.02575 0.79001 1.06224 1.47788 1.45670 1.14981 1.22680 1.20230 0.79509 0.85338 0.85294 1.90734 1.53358 1.20525 1.75501 1.19657 0.81794 0.86490 0.85144 1.89875 1.55458 1.18241 1.75345 1.42153 1.47352 1.16639 1.14896 1.17244 1.15248 0.96715 0.89057 1.24149 1.04873 0.95435 0.95382 1.78285 1.14174 1.04092 1.12570 1.44580 1.28448 1.06924 1.10187 1.19910 1.31742 1.02292 0.91414 0.86386 1.25673 0.96614 0.94637 1.00181 1.70182 1.32612 1.02593 1.33783 0.85860 0.79785 0.78665 0.79705 1.19045 1.20042 1.19037 1.21319 1.11849 0.97660 0.91923 0.91549 0.90646 0.91993 0.88675 0.87287 0.76456 0.87940 0.90436 0.91113 0.78774 0.75294 0.80429 0.91187 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.43 37.16 0.31 -1.26 16 2 C 0.14 1.38 3.10 -67.68 -0.21 1.17 16 3 H 0.12 1.21 6.82 -51.92 -0.35 0.86 16 4 C -0.15 -1.40 5.43 -27.21 -0.15 -1.55 16 5 C 0.52 5.70 5.05 -11.26 -0.06 5.65 16 6 O -0.55 -8.04 17.91 5.55 0.10 -7.94 16 7 N -0.73 -6.31 5.23 -59.99 -0.31 -6.62 16 8 C 0.10 0.77 6.49 -3.70 -0.02 0.74 16 9 C 0.00 -0.02 5.62 -4.16 -0.02 -0.04 16 10 N -0.58 -6.41 2.53 -166.62 -0.42 -6.83 16 11 C 0.51 6.91 7.67 -11.65 -0.09 6.82 16 12 O -0.53 -7.80 15.72 5.48 0.09 -7.71 16 13 C 0.49 7.54 7.76 -11.65 -0.09 7.45 16 14 O -0.51 -8.30 10.04 5.46 0.05 -8.25 16 15 N -0.57 -9.50 5.45 -10.46 -0.06 -9.56 16 16 C -0.08 -1.61 6.90 -83.93 -0.58 -2.19 16 17 C -0.02 -0.53 10.84 -17.02 -0.18 -0.72 16 18 N -0.26 -7.00 10.39 30.81 0.32 -6.68 16 19 N -0.14 -3.47 3.73 -11.40 -0.04 -3.51 16 20 C -0.32 -7.99 10.25 -14.82 -0.15 -8.14 16 21 H 0.12 2.61 7.83 -52.49 -0.41 2.19 16 22 C 0.05 1.14 5.50 -17.50 -0.10 1.05 16 23 N -0.77 -20.16 11.81 55.50 0.66 -19.51 16 24 Si 0.94 17.88 29.55 -169.99 -5.02 12.85 16 25 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 26 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 27 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 28 C -0.08 -1.66 11.50 -16.38 -0.19 -1.84 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.64 5.76 -51.93 -0.30 0.34 16 32 H 0.09 0.84 7.07 -51.93 -0.37 0.47 16 33 H 0.11 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.40 3.03 8.91 -40.82 -0.36 2.66 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.65 7.02 -51.93 -0.36 0.28 16 37 H 0.07 0.69 7.13 -51.93 -0.37 0.32 16 38 H 0.20 2.36 3.31 -58.58 -0.19 2.16 16 39 H 0.41 5.92 8.31 -40.82 -0.34 5.58 16 40 H 0.18 3.92 5.92 -52.48 -0.31 3.61 16 41 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.15 2.72 8.06 -52.49 -0.42 2.29 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -31.43 345.21 -5.59 -37.02 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -4.62 Total: 14.39 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.53 Total: 7.14 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.14 Total: -52.71 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.24 Total: -23.90 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.43 -5.59 -37.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326016708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.140 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds