Wall clock time and date at job start Tue Mar 31 2020 19:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.45984 * 2 1 4 4 C 1.53832 * 109.55795 * 240.03515 * 2 1 3 5 5 C 1.51188 * 108.32962 * 320.16236 * 4 2 1 6 6 O 1.21288 * 119.77223 * 108.78259 * 5 4 2 7 7 N 1.33631 * 120.45976 * 288.51167 * 5 4 2 8 8 C 1.46921 * 120.62578 * 359.97438 * 7 5 4 9 9 C 1.53217 * 108.82577 * 71.96336 * 8 7 5 10 10 N 1.46071 * 109.72156 * 278.41006 * 9 8 7 11 11 C 1.34776 * 118.73180 * 243.83283 * 10 9 8 12 12 O 1.21371 * 119.99856 * 173.49335 * 11 10 9 13 13 C 1.49311 * 119.99958 * 353.49077 * 11 10 9 14 14 O 1.21397 * 119.99810 * 5.96323 * 13 11 10 15 15 N 1.34776 * 119.99993 * 185.96136 * 13 11 10 16 16 C 1.40290 * 120.00172 * 180.02562 * 15 13 11 17 17 C 1.40722 * 126.09786 * 359.69529 * 16 15 13 18 18 N 1.30871 * 108.37806 * 179.85160 * 17 16 15 19 19 N 1.40065 * 108.43514 * 0.40216 * 18 17 16 20 20 C 1.37294 * 126.05950 * 179.73699 * 19 18 17 21 21 H 1.07997 * 120.00491 * 179.97438 * 20 19 18 22 22 C 1.39013 * 119.99765 * 0.02562 * 20 19 18 23 23 N 1.31280 * 120.00091 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99791 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47230 * 60.00169 * 24 22 20 26 26 H 1.48508 * 109.46819 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47177 * 299.99658 * 24 22 20 28 28 C 1.35786 * 126.10167 * 180.02562 * 16 15 13 29 29 H 1.09000 * 109.47249 * 300.01973 * 1 2 3 30 30 H 1.09003 * 109.47293 * 60.02276 * 1 2 3 31 31 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.72521 * 200.52796 * 4 2 1 33 33 H 1.09005 * 109.78525 * 79.82653 * 4 2 1 34 34 H 0.97001 * 119.69162 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.58010 * 191.76928 * 8 7 5 36 36 H 1.09004 * 109.57310 * 312.16215 * 8 7 5 37 37 H 1.08998 * 109.42910 * 38.48777 * 9 8 7 38 38 H 1.09000 * 109.43390 * 158.33179 * 9 8 7 39 39 H 0.97003 * 120.00023 * 359.97438 * 15 13 11 40 40 H 1.08005 * 125.81031 * 359.97438 * 17 16 15 41 41 H 0.96998 * 120.00476 * 179.97438 * 23 22 20 42 42 H 1.07995 * 126.24919 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0450 -0.7240 -1.2558 5 6 1.1657 -1.9285 -1.5043 6 8 0.3986 -1.9307 -2.4438 7 7 1.2316 -2.9931 -0.6993 8 6 2.1587 -3.0133 0.4404 9 6 1.6357 -2.0603 1.5201 10 7 2.0173 -0.6886 1.1937 11 6 2.8511 -0.0328 2.0251 12 8 3.2769 1.0617 1.7185 13 6 3.2508 -0.6525 3.3233 14 8 2.9136 -1.7896 3.5823 15 7 3.9859 0.0504 4.2076 16 6 4.3620 -0.5321 5.4272 17 6 4.0390 -1.8316 5.8598 18 7 4.5669 -2.0157 7.0431 19 7 5.2372 -0.8438 7.4163 20 6 5.9145 -0.6400 8.5930 21 1 6.3990 0.3068 8.7802 22 6 5.9776 -1.6529 9.5430 23 7 5.3891 -2.8041 9.3152 24 14 6.8997 -1.3759 11.1437 25 1 6.2909 -0.2358 11.8748 26 1 6.8179 -2.6001 11.9804 27 1 8.3229 -1.0716 10.8488 28 6 5.0973 0.0596 6.4034 29 1 -0.3634 0.5141 0.8898 30 1 -0.3634 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 3.0735 -1.0482 -1.0978 33 1 1.9978 -0.0533 -2.1138 34 1 0.6621 -3.7597 -0.8688 35 1 2.2197 -4.0240 0.8437 36 1 3.1464 -2.6882 0.1135 37 1 0.5493 -2.1319 1.5716 38 1 2.0625 -2.3356 2.4845 39 1 4.2557 0.9588 4.0004 40 1 3.4565 -2.5548 5.3082 41 1 5.4334 -3.5110 9.9779 42 1 5.4977 1.0624 6.3822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326016708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:03 Heat of formation + Delta-G solvation = -6.090960 kcal Electronic energy + Delta-G solvation = -29008.919100 eV Core-core repulsion = 24798.660898 eV Total energy + Delta-G solvation = -4210.258201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.48910 -41.59770 -40.79644 -39.49060 -38.00583 -36.16289 -35.73632 -35.01974 -33.58874 -32.25670 -30.00362 -29.58526 -29.01339 -27.25342 -25.80276 -25.09197 -23.04945 -22.54552 -21.39878 -21.31029 -20.31768 -19.46102 -18.86757 -18.17132 -18.06752 -17.46959 -17.41289 -17.11702 -16.71657 -16.45927 -16.35367 -15.71329 -15.66187 -15.43886 -14.87833 -14.85038 -14.78275 -14.20922 -13.92623 -13.83627 -13.49902 -13.45257 -13.34553 -13.17672 -12.90964 -12.87523 -12.72604 -12.64619 -12.17253 -12.12474 -11.97677 -11.92721 -11.03994 -10.92431 -10.82347 -10.56280 -10.10654 -9.97918 -9.64977 -8.60445 -8.46535 -6.23602 0.22741 1.19753 1.32763 1.43414 1.54139 1.58088 1.74003 2.03726 2.12271 2.30841 2.43184 2.55316 2.85125 3.10198 3.29310 3.47877 3.70946 3.88599 4.07714 4.12653 4.19417 4.29313 4.42604 4.44083 4.55884 4.61747 4.71626 4.80040 4.85769 4.97404 4.98575 5.01497 5.11916 5.25816 5.30183 5.63728 5.79663 5.94796 5.97214 6.18902 6.25302 6.41081 6.70880 6.75089 7.08909 7.18182 7.43619 7.67221 8.52111 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033223 B = 0.002346 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.576443 B =11930.284253 C =12496.172967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.117 0.883 4 C -0.145 4.145 5 C 0.521 3.479 6 O -0.593 6.593 7 N -0.716 5.716 8 C 0.100 3.900 9 C -0.001 4.001 10 N -0.567 5.567 11 C 0.521 3.479 12 O -0.537 6.537 13 C 0.493 3.507 14 O -0.515 6.515 15 N -0.574 5.574 16 C -0.058 4.058 17 C -0.040 4.040 18 N -0.309 5.309 19 N -0.165 5.165 20 C -0.354 4.354 21 H 0.139 0.861 22 C -0.002 4.002 23 N -0.819 5.819 24 Si 1.015 2.985 25 H -0.255 1.255 26 H -0.278 1.278 27 H -0.255 1.255 28 C -0.074 4.074 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.406 0.594 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.183 0.817 39 H 0.424 0.576 40 H 0.185 0.815 41 H 0.278 0.722 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 3.497 -14.289 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.135 0.865 4 C -0.186 4.186 5 C 0.309 3.691 6 O -0.475 6.475 7 N -0.367 5.367 8 C -0.024 4.024 9 C -0.121 4.121 10 N -0.300 5.300 11 C 0.304 3.696 12 O -0.414 6.414 13 C 0.276 3.724 14 O -0.395 6.395 15 N -0.217 5.217 16 C -0.165 4.165 17 C -0.216 4.216 18 N -0.140 5.140 19 N 0.068 4.932 20 C -0.485 4.485 21 H 0.157 0.843 22 C -0.215 4.215 23 N -0.447 5.447 24 Si 0.835 3.165 25 H -0.179 1.179 26 H -0.203 1.203 27 H -0.179 1.179 28 C -0.225 4.225 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.243 0.757 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.197 0.803 39 H 0.262 0.738 40 H 0.202 0.798 41 H 0.087 0.913 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.726 2.423 -13.664 14.660 hybrid contribution -0.085 0.501 -0.299 0.590 sum -4.811 2.924 -13.963 15.055 Atomic orbital electron populations 1.22156 0.93435 1.02585 1.03559 1.21261 0.95058 0.97959 0.82015 0.86482 1.22515 1.00265 0.95635 1.00179 1.20688 0.82657 0.84994 0.80800 1.90740 1.41794 1.82678 1.32272 1.46077 1.42427 1.18634 1.29601 1.22263 0.92608 1.02561 0.84976 1.24342 1.02868 0.78788 1.06145 1.47856 1.44486 1.15209 1.22408 1.19748 0.80097 0.85146 0.84651 1.90743 1.54161 1.20942 1.75542 1.20154 0.80482 0.86221 0.85540 1.89946 1.54999 1.18668 1.75881 1.42092 1.48381 1.17382 1.13856 1.17240 1.13487 0.95616 0.90129 1.24362 1.05275 0.96865 0.95102 1.78171 1.15620 1.05982 1.14194 1.44808 1.29741 1.07288 1.11393 1.20559 1.32515 1.03541 0.91856 0.84332 1.26796 0.97022 0.93967 1.03697 1.70346 1.35150 1.03878 1.35298 0.84697 0.78607 0.78516 0.74722 1.17936 1.20272 1.17886 1.22018 1.10861 0.98598 0.91031 0.91520 0.89920 0.92707 0.87798 0.86175 0.75675 0.85576 0.90118 0.90537 0.80258 0.73845 0.79826 0.91271 0.79795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.43 71.98 0.61 -2.13 16 2 C 0.14 2.47 3.10 45.33 0.14 2.61 16 3 H 0.12 2.15 6.82 -2.38 -0.02 2.13 16 4 C -0.15 -2.36 5.43 30.28 0.16 -2.20 16 5 C 0.52 10.37 5.05 87.99 0.44 10.82 16 6 O -0.59 -16.44 17.91 -3.05 -0.05 -16.49 16 7 N -0.72 -10.83 5.23 -462.75 -2.42 -13.25 16 8 C 0.10 1.35 6.49 86.37 0.56 1.91 16 9 C 0.00 -0.01 5.62 86.53 0.49 0.47 16 10 N -0.57 -11.35 2.53 -799.42 -2.02 -13.37 16 11 C 0.52 12.99 7.67 87.23 0.67 13.66 16 12 O -0.54 -14.75 15.72 -3.31 -0.05 -14.80 16 13 C 0.49 14.54 7.76 87.23 0.68 15.22 16 14 O -0.51 -16.29 10.04 -3.39 -0.03 -16.32 16 15 N -0.57 -18.30 5.45 -305.34 -1.66 -19.96 16 16 C -0.06 -2.41 6.90 37.82 0.26 -2.15 16 17 C -0.04 -1.92 10.84 85.44 0.93 -0.99 16 18 N -0.31 -17.06 10.39 -56.43 -0.59 -17.65 16 19 N -0.16 -8.55 3.73 -189.98 -0.71 -9.26 16 20 C -0.35 -17.76 10.25 84.02 0.86 -16.90 16 21 H 0.14 6.04 7.83 -2.91 -0.02 6.02 16 22 C 0.00 -0.12 5.50 84.96 0.47 0.35 16 23 N -0.82 -44.73 11.81 21.67 0.26 -44.48 16 24 Si 1.02 36.74 29.55 68.60 2.03 38.76 16 25 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 26 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 27 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 28 C -0.07 -3.19 11.50 83.41 0.96 -2.23 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.02 5.76 -2.39 -0.01 1.01 16 32 H 0.10 1.54 7.07 -2.39 -0.02 1.52 16 33 H 0.12 1.74 8.13 -2.38 -0.02 1.72 16 34 H 0.41 5.30 8.91 -92.71 -0.83 4.48 16 35 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.11 7.02 -2.38 -0.02 1.10 16 37 H 0.08 1.34 7.13 -2.39 -0.02 1.32 16 38 H 0.18 4.05 3.31 -107.69 -0.36 3.69 16 39 H 0.42 11.37 8.31 -92.71 -0.77 10.60 16 40 H 0.19 8.25 5.92 -2.91 -0.02 8.23 16 41 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.19 6.33 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -69.83 345.21 1.14 -68.68 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.82 Total: 39.70 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 7.22 Total: 18.44 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -7.14 Total: -117.98 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.14 Total: -47.61 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.76 kcal Total: -69.83 1.14 -68.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326016708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.591 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds