Wall clock time and date at job start Tue Mar 31 2020 19:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.45333 * 2 1 4 4 C 1.53315 * 109.46051 * 119.97157 * 2 1 3 5 5 C 1.51197 * 108.61982 * 39.93156 * 4 2 1 6 6 O 1.21271 * 119.76994 * 251.25184 * 5 4 2 7 7 N 1.33632 * 120.45735 * 71.25508 * 5 4 2 8 8 C 1.46925 * 120.62760 * 0.28305 * 7 5 4 9 9 C 1.53219 * 108.82327 * 288.04565 * 8 7 5 10 10 N 1.46060 * 109.72414 * 81.59606 * 9 8 7 11 11 C 1.34781 * 118.73410 * 116.18287 * 10 9 8 12 12 O 1.21366 * 119.99761 * 171.40598 * 11 10 9 13 13 C 1.49306 * 119.99790 * 351.40748 * 11 10 9 14 14 O 1.21406 * 119.99826 * 352.63905 * 13 11 10 15 15 N 1.34770 * 119.99939 * 172.64141 * 13 11 10 16 16 C 1.40294 * 119.99905 * 180.02562 * 15 13 11 17 17 C 1.40722 * 126.10179 * 359.68136 * 16 15 13 18 18 N 1.30877 * 108.37667 * 179.82250 * 17 16 15 19 19 N 1.40068 * 108.43565 * 0.44136 * 18 17 16 20 20 C 1.37289 * 126.05360 * 179.73986 * 19 18 17 21 21 H 1.07996 * 119.99698 * 179.97438 * 20 19 18 22 22 C 1.39012 * 120.00116 * 359.97359 * 20 19 18 23 23 N 1.31273 * 119.99800 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99707 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47165 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46923 * 120.00406 * 24 22 20 27 27 H 1.48498 * 109.46797 * 240.00016 * 24 22 20 28 28 C 1.35791 * 126.09698 * 180.02562 * 16 15 13 29 29 H 1.08998 * 109.46663 * 300.02508 * 1 2 3 30 30 H 1.08996 * 109.46739 * 60.02844 * 1 2 3 31 31 H 1.08999 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.60979 * 159.66698 * 4 2 1 33 33 H 1.08996 * 109.61659 * 280.19019 * 4 2 1 34 34 H 0.97000 * 119.68189 * 180.29067 * 7 5 4 35 35 H 1.08999 * 109.57621 * 168.23902 * 8 7 5 36 36 H 1.08994 * 109.57507 * 47.84672 * 8 7 5 37 37 H 1.09001 * 109.43091 * 321.51768 * 9 8 7 38 38 H 1.09003 * 109.42396 * 201.67200 * 9 8 7 39 39 H 0.97000 * 120.00473 * 359.97438 * 15 13 11 40 40 H 1.07997 * 125.80954 * 0.02562 * 17 16 15 41 41 H 0.97008 * 119.99941 * 179.97438 * 23 22 20 42 42 H 1.07993 * 126.25364 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0409 -0.7222 1.2523 5 6 1.1657 -1.9291 1.5042 6 8 0.3989 -1.9313 2.4437 7 7 1.2315 -2.9935 0.6989 8 6 2.1583 -3.0135 -0.4410 9 6 1.6351 -2.0601 -1.5203 10 7 2.0171 -0.6886 -1.1937 11 6 2.8504 -0.0325 -2.0254 12 8 3.0599 1.1520 -1.8644 13 6 3.5157 -0.7631 -3.1448 14 8 3.4137 -1.9700 -3.2274 15 7 4.2295 -0.0826 -4.0634 16 6 4.8542 -0.7690 -5.1155 17 6 4.8256 -2.1593 -5.3311 18 7 5.5169 -2.4237 -6.4105 19 7 6.0210 -1.2202 -6.9195 20 6 6.8009 -1.0807 -8.0408 21 1 7.1368 -0.1009 -8.3464 22 6 7.1580 -2.2007 -8.7828 23 7 6.7492 -3.3916 -8.4115 24 14 8.2185 -2.0108 -10.3088 25 1 8.5435 -0.5759 -10.5103 26 1 9.4752 -2.7832 -10.1375 27 1 7.4803 -2.5225 -11.4913 28 6 5.5998 -0.2109 -6.1037 29 1 -0.3632 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.0705 -1.0433 1.0949 33 1 1.9915 -0.0494 2.1084 34 1 0.6619 -3.7601 0.8685 35 1 2.2190 -4.0242 -0.8447 36 1 3.1461 -2.6886 -0.1143 37 1 0.5487 -2.1314 -1.5715 38 1 2.0617 -2.3353 -2.4849 39 1 4.3107 0.8817 -3.9976 40 1 4.3167 -2.8843 -4.7132 41 1 6.9981 -4.1732 -8.9294 42 1 5.8195 0.8398 -6.2221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326016710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:06 Heat of formation + Delta-G solvation = 13.702030 kcal Electronic energy + Delta-G solvation = -29048.356291 eV Core-core repulsion = 24838.956378 eV Total energy + Delta-G solvation = -4209.399913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39330 -40.20518 -39.48116 -38.18604 -37.00790 -34.98475 -34.58672 -33.34032 -32.67690 -30.42523 -28.89896 -28.24493 -28.13463 -25.68109 -24.49661 -24.15009 -21.67797 -21.13918 -20.30124 -19.64080 -19.36517 -18.00476 -17.64641 -17.20316 -17.08493 -16.43999 -16.09542 -15.62619 -15.45539 -15.25075 -15.17133 -14.52316 -14.18270 -14.15900 -13.76668 -13.41192 -13.32367 -13.14759 -12.90878 -12.86432 -12.61547 -12.36647 -12.06179 -11.88811 -11.80756 -11.51000 -11.39712 -11.36790 -11.05468 -10.91078 -10.58393 -10.41125 -10.02324 -9.67677 -9.33811 -9.00404 -8.91153 -8.76881 -8.23417 -6.90223 -6.69131 -4.36799 1.43915 2.32613 2.39828 2.85524 2.98929 3.04816 3.06261 3.15757 3.51111 3.58468 3.76364 4.16926 4.24822 4.40357 4.51541 4.66495 4.81303 4.84788 4.87968 4.90034 4.93484 5.05739 5.16740 5.36958 5.47847 5.60487 5.68863 5.82904 5.94398 6.09390 6.20542 6.23890 6.53161 6.62375 6.79245 6.88968 6.94228 7.00807 7.07383 7.56765 7.72645 7.94318 7.98521 8.07089 8.33505 8.58005 9.21001 9.49374 10.26494 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031999 B = 0.002381 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.811937 B =11758.995757 C =12389.352753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.118 0.882 4 C -0.152 4.152 5 C 0.523 3.477 6 O -0.554 6.554 7 N -0.727 5.727 8 C 0.098 3.902 9 C 0.029 3.971 10 N -0.581 5.581 11 C 0.513 3.487 12 O -0.524 6.524 13 C 0.484 3.516 14 O -0.513 6.513 15 N -0.573 5.573 16 C -0.075 4.075 17 C -0.023 4.023 18 N -0.261 5.261 19 N -0.136 5.136 20 C -0.321 4.321 21 H 0.119 0.881 22 C 0.047 3.953 23 N -0.766 5.766 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.076 4.076 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.400 0.600 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.175 0.825 39 H 0.411 0.589 40 H 0.179 0.821 41 H 0.276 0.724 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 3.441 11.928 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.135 0.865 4 C -0.193 4.193 5 C 0.310 3.690 6 O -0.433 6.433 7 N -0.380 5.380 8 C -0.027 4.027 9 C -0.093 4.093 10 N -0.315 5.315 11 C 0.296 3.704 12 O -0.400 6.400 13 C 0.266 3.734 14 O -0.394 6.394 15 N -0.214 5.214 16 C -0.181 4.181 17 C -0.199 4.199 18 N -0.091 5.091 19 N 0.097 4.903 20 C -0.453 4.453 21 H 0.137 0.863 22 C -0.171 4.171 23 N -0.392 5.392 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.228 4.228 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.191 0.809 39 H 0.246 0.754 40 H 0.196 0.804 41 H 0.087 0.913 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.503 2.255 11.547 13.954 hybrid contribution -0.019 0.881 0.083 0.885 sum -7.522 3.136 11.630 14.201 Atomic orbital electron populations 1.22195 0.93947 1.02888 1.03188 1.21060 0.95006 0.97988 0.82304 0.86458 1.22465 1.00432 0.96164 1.00287 1.20411 0.83000 0.84345 0.81256 1.90748 1.40021 1.81942 1.30546 1.46111 1.42765 1.18957 1.30117 1.22150 0.93000 1.01800 0.85726 1.23697 1.01490 0.79244 1.04871 1.47761 1.45547 1.15152 1.23023 1.20336 0.79731 0.86838 0.83457 1.90731 1.62017 1.14722 1.72527 1.19630 0.82500 0.87496 0.83733 1.90215 1.60568 1.13778 1.74841 1.42189 1.45788 1.10685 1.22746 1.17246 1.12594 0.92447 0.95782 1.24148 1.03995 0.93288 0.98476 1.78281 1.16443 1.03417 1.10999 1.44589 1.27496 1.03008 1.15166 1.19996 1.28360 0.96262 1.00684 0.86321 1.25674 0.97293 0.94543 0.99620 1.70204 1.35156 0.98332 1.35484 0.85735 0.79137 0.79427 0.79726 1.18585 1.19816 1.19813 1.21324 1.09611 0.94493 0.97356 0.90664 0.91538 0.92043 0.88635 0.87211 0.76413 0.87852 0.90150 0.91162 0.80911 0.75424 0.80440 0.91323 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.42 37.16 0.31 -1.21 16 2 C 0.14 1.37 3.11 -67.95 -0.21 1.16 16 3 H 0.12 1.21 6.79 -51.93 -0.35 0.85 16 4 C -0.15 -1.40 5.38 -27.48 -0.15 -1.55 16 5 C 0.52 5.64 5.07 -11.25 -0.06 5.59 16 6 O -0.55 -7.95 17.91 5.56 0.10 -7.85 16 7 N -0.73 -6.24 5.23 -59.99 -0.31 -6.56 16 8 C 0.10 0.80 6.49 -3.70 -0.02 0.78 16 9 C 0.03 0.28 5.35 -4.17 -0.02 0.26 16 10 N -0.58 -6.37 2.53 -166.94 -0.42 -6.79 16 11 C 0.51 6.91 7.66 -11.65 -0.09 6.82 16 12 O -0.52 -7.82 15.73 5.48 0.09 -7.74 16 13 C 0.48 7.52 7.68 -11.66 -0.09 7.43 16 14 O -0.51 -8.38 10.18 5.45 0.06 -8.32 16 15 N -0.57 -9.62 5.44 -10.46 -0.06 -9.68 16 16 C -0.07 -1.57 6.90 -83.92 -0.58 -2.15 16 17 C -0.02 -0.55 10.85 -17.02 -0.18 -0.73 16 18 N -0.26 -7.02 10.39 30.81 0.32 -6.70 16 19 N -0.14 -3.51 3.73 -11.40 -0.04 -3.55 16 20 C -0.32 -8.01 10.25 -14.82 -0.15 -8.16 16 21 H 0.12 2.65 7.83 -52.49 -0.41 2.24 16 22 C 0.05 1.14 5.50 -17.50 -0.10 1.04 16 23 N -0.77 -20.21 11.81 55.50 0.66 -19.56 16 24 Si 0.94 17.95 29.55 -169.99 -5.02 12.93 16 25 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 27 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 28 C -0.08 -1.67 11.50 -16.38 -0.19 -1.86 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 5.76 -51.93 -0.30 0.31 16 32 H 0.10 0.84 7.07 -51.93 -0.37 0.47 16 33 H 0.11 0.91 8.13 -51.93 -0.42 0.48 16 34 H 0.40 2.98 8.91 -40.82 -0.36 2.62 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.71 7.03 -51.93 -0.36 0.34 16 37 H 0.07 0.64 7.13 -51.93 -0.37 0.27 16 38 H 0.18 2.05 3.89 -56.89 -0.22 1.83 16 39 H 0.41 5.97 8.31 -40.82 -0.34 5.63 16 40 H 0.18 3.93 5.92 -52.49 -0.31 3.62 16 41 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 42 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -31.64 345.54 -5.61 -37.25 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -4.65 Total: 13.96 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.53 Total: 7.40 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.14 Total: -52.84 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.24 Total: -23.91 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.02 Total: 12.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.64 -5.61 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326016710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.949 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds