Wall clock time and date at job start Tue Mar 31 2020 19:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47168 * 2 1 4 4 O 1.21283 * 120.00100 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00021 * 179.97438 * 3 2 1 6 6 C 1.47553 * 126.86214 * 179.97438 * 5 3 2 7 7 C 1.54340 * 104.01609 * 151.59109 * 6 5 3 8 8 N 1.47239 * 104.91320 * 28.35252 * 7 6 5 9 9 C 1.34772 * 126.21222 * 162.72456 * 8 7 6 10 10 O 1.21364 * 119.99531 * 179.69001 * 9 8 7 11 11 C 1.49306 * 120.00120 * 359.69524 * 9 8 7 12 12 O 1.21395 * 120.00471 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99749 * 179.97438 * 11 9 8 14 14 C 1.40292 * 119.99724 * 179.97438 * 13 11 9 15 15 C 1.40722 * 126.10165 * 359.97176 * 14 13 11 16 16 N 1.30881 * 108.37489 * 180.02562 * 15 14 13 17 17 N 1.40064 * 108.43666 * 0.02562 * 16 15 14 18 18 C 1.37287 * 126.05460 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00133 * 179.97438 * 18 17 16 20 20 C 1.39006 * 120.00042 * 359.95474 * 18 17 16 21 21 N 1.31279 * 120.00351 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00064 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47028 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47501 * 120.00051 * 22 20 18 25 25 H 1.48499 * 109.47391 * 239.99875 * 22 20 18 26 26 C 1.35794 * 126.09874 * 180.02562 * 14 13 11 27 27 C 1.46828 * 107.56554 * 342.46239 * 8 7 6 28 28 H 1.08998 * 109.47619 * 59.99721 * 1 2 3 29 29 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47272 * 299.99416 * 1 2 3 31 31 H 1.09002 * 109.47028 * 239.99846 * 2 1 3 32 32 H 1.09001 * 109.46756 * 120.00520 * 2 1 3 33 33 H 1.09007 * 110.50234 * 270.46223 * 6 5 3 34 34 H 1.08997 * 110.50494 * 33.01222 * 6 5 3 35 35 H 1.09009 * 110.47616 * 269.44727 * 7 6 5 36 36 H 1.09007 * 110.28118 * 147.15790 * 7 6 5 37 37 H 0.96998 * 120.00313 * 359.97438 * 13 11 9 38 38 H 1.07998 * 125.81084 * 0.04944 * 15 14 13 39 39 H 0.97001 * 120.00758 * 180.02562 * 21 20 18 40 40 H 1.08005 * 126.24670 * 359.71014 * 26 14 13 41 41 H 1.09010 * 109.67191 * 119.91706 * 27 8 7 42 42 H 1.08995 * 109.67524 * 240.40758 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3573 1.6670 0.0005 6 6 4.0119 2.9894 0.0001 7 6 5.3578 2.7406 0.7133 8 7 5.6767 1.3295 0.4392 9 6 6.8843 0.7460 0.5714 10 8 7.0193 -0.4333 0.3183 11 6 8.0559 1.5502 1.0294 12 8 7.9210 2.7298 1.2822 13 7 9.2635 0.9664 1.1621 14 6 10.3645 1.7222 1.5919 15 6 10.3543 3.0912 1.9172 16 7 11.5645 3.4397 2.2736 17 7 12.3925 2.3131 2.1902 18 6 13.7331 2.2721 2.4832 19 1 14.2794 1.3457 2.3846 20 6 14.3875 3.4232 2.9063 21 7 13.7236 4.5493 3.0263 22 14 16.2118 3.3676 3.3043 23 1 16.7236 1.9903 3.0892 24 1 16.9408 4.3101 2.4179 25 1 16.4215 3.7585 4.7215 26 6 11.6305 1.2633 1.7672 27 6 4.4387 0.6723 0.0017 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.1744 3.3346 -1.0210 34 1 3.4137 3.7117 0.5556 35 1 5.2568 2.9046 1.7863 36 1 6.1297 3.3905 0.3010 37 1 9.3713 0.0237 0.9604 38 1 9.4942 3.7432 1.8796 39 1 14.1803 5.3527 3.3212 40 1 11.9710 0.2511 1.6056 41 1 4.5710 0.2727 -1.0038 42 1 4.1905 -0.1369 0.6884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345685078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:03 Heat of formation + Delta-G solvation = -14.889621 kcal Electronic energy + Delta-G solvation = -27910.284716 eV Core-core repulsion = 23699.644976 eV Total energy + Delta-G solvation = -4210.639740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22233 -41.55473 -40.79329 -39.50128 -38.60309 -36.14676 -35.08120 -34.43913 -33.68079 -32.28448 -31.10222 -29.94117 -28.22752 -26.90873 -25.82142 -24.45564 -23.56410 -22.89591 -21.47635 -21.09499 -20.58627 -19.39476 -18.96676 -18.22615 -18.03085 -17.58415 -17.42216 -16.88679 -16.75696 -16.40890 -16.07625 -15.94220 -15.53749 -15.31135 -14.96008 -14.86549 -14.64393 -14.42902 -14.07634 -13.94670 -13.51027 -13.44994 -13.32927 -13.20810 -12.95495 -12.93767 -12.83512 -12.60023 -12.49884 -12.04531 -12.02520 -11.97995 -11.10880 -11.07700 -10.85459 -10.58247 -10.28486 -10.13100 -9.86302 -8.61005 -8.48360 -6.25717 0.20836 0.88069 1.28718 1.41776 1.47349 1.60180 1.71168 1.75708 2.00525 2.10810 2.38151 2.52701 2.81690 3.08496 3.25709 3.36869 3.55337 3.92915 3.98651 4.13202 4.19840 4.29365 4.35466 4.41133 4.53961 4.57618 4.69491 4.78556 4.81941 4.96016 4.98146 4.99888 5.05650 5.07534 5.23576 5.31811 5.36366 5.72683 5.92744 6.15412 6.27291 6.35868 6.62629 6.71533 6.94769 7.05107 7.42359 7.64605 8.50911 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.001959 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.990520 B =14286.462019 C =14854.386236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.536 3.464 4 O -0.573 6.573 5 N -0.631 5.631 6 C 0.094 3.906 7 C 0.096 3.904 8 N -0.600 5.600 9 C 0.552 3.448 10 O -0.527 6.527 11 C 0.491 3.509 12 O -0.532 6.532 13 N -0.580 5.580 14 C -0.055 4.055 15 C -0.045 4.045 16 N -0.309 5.309 17 N -0.165 5.165 18 C -0.352 4.352 19 H 0.142 0.858 20 C -0.005 4.005 21 N -0.821 5.821 22 Si 1.018 2.982 23 H -0.241 1.241 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.073 4.073 27 C 0.335 3.665 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.424 0.576 38 H 0.178 0.822 39 H 0.277 0.723 40 H 0.188 0.812 41 H 0.101 0.899 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.724 -11.342 -6.249 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.328 3.672 4 O -0.451 6.451 5 N -0.367 5.367 6 C -0.028 4.028 7 C -0.027 4.027 8 N -0.336 5.336 9 C 0.334 3.666 10 O -0.403 6.403 11 C 0.272 3.728 12 O -0.410 6.410 13 N -0.225 5.225 14 C -0.161 4.161 15 C -0.221 4.221 16 N -0.141 5.141 17 N 0.067 4.933 18 C -0.484 4.484 19 H 0.159 0.841 20 C -0.217 4.217 21 N -0.449 5.449 22 Si 0.837 3.163 23 H -0.164 1.164 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.224 4.224 27 C 0.128 3.872 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.262 0.738 38 H 0.195 0.805 39 H 0.087 0.913 40 H 0.205 0.795 41 H 0.119 0.881 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.456 -9.549 -5.753 20.712 hybrid contribution 0.279 -0.409 -0.066 0.500 sum -17.177 -9.958 -5.818 20.690 Atomic orbital electron populations 1.21554 0.93001 1.02913 1.02045 1.21784 0.98467 0.90562 1.06836 1.21169 0.78711 0.93388 0.73968 1.90724 1.54449 1.48451 1.51506 1.48790 1.05308 1.08355 1.74239 1.22647 0.91405 0.86477 1.02295 1.22781 0.96802 0.81307 1.01813 1.48102 1.07607 1.12937 1.64928 1.19163 0.82233 0.86378 0.78788 1.90773 1.84045 1.15432 1.50098 1.19912 0.84075 0.87529 0.81287 1.90639 1.84024 1.16285 1.50058 1.42017 1.05388 1.13377 1.61687 1.17239 0.87520 0.92176 1.19212 1.24275 0.96731 0.94766 1.06306 1.78171 1.00361 1.08720 1.26816 1.44834 1.07389 1.04648 1.36386 1.20676 0.80527 0.99913 1.47237 0.84097 1.26849 1.06299 0.93794 0.94730 1.70371 1.38716 1.00661 1.35144 0.84548 0.73570 0.80186 0.78009 1.16399 1.19805 1.19812 1.22019 0.90576 0.95649 1.14145 1.21557 0.75586 0.87776 1.02315 0.93202 0.89455 0.93462 0.86070 0.86529 0.89139 0.88375 0.89943 0.87737 0.73809 0.80536 0.91290 0.79490 0.88149 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 71.98 0.66 -0.82 16 2 C -0.14 -1.26 5.56 29.85 0.17 -1.09 16 3 C 0.54 9.37 7.88 87.66 0.69 10.06 16 4 O -0.57 -14.85 16.29 -3.04 -0.05 -14.90 16 5 N -0.63 -10.04 3.34 -826.56 -2.76 -12.80 16 6 C 0.09 1.56 7.15 86.63 0.62 2.18 16 7 C 0.10 1.86 6.04 86.69 0.52 2.39 16 8 N -0.60 -12.26 3.35 -829.19 -2.77 -15.04 16 9 C 0.55 14.22 7.92 87.23 0.69 14.91 16 10 O -0.53 -14.30 16.83 -3.29 -0.06 -14.36 16 11 C 0.49 15.80 7.82 87.22 0.68 16.48 16 12 O -0.53 -19.38 11.15 -3.39 -0.04 -19.42 16 13 N -0.58 -19.62 5.45 -305.33 -1.66 -21.29 16 14 C -0.06 -2.40 6.90 37.83 0.26 -2.14 16 15 C -0.05 -2.29 10.85 85.44 0.93 -1.36 16 16 N -0.31 -17.80 10.39 -56.43 -0.59 -18.39 16 17 N -0.16 -8.80 3.73 -189.98 -0.71 -9.51 16 18 C -0.35 -18.06 10.25 84.02 0.86 -17.20 16 19 H 0.14 6.26 7.83 -2.91 -0.02 6.24 16 20 C 0.00 -0.23 5.50 84.96 0.47 0.23 16 21 N -0.82 -45.97 11.81 21.66 0.26 -45.72 16 22 Si 1.02 37.47 29.55 68.60 2.03 39.50 16 23 H -0.24 -7.95 7.11 99.48 0.71 -7.25 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 25 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 26 C -0.07 -3.24 11.50 83.41 0.96 -2.28 16 27 C 0.33 4.75 6.77 170.67 1.15 5.91 16 28 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 31 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.12 0.65 7.97 -2.39 -0.02 0.63 16 33 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.10 1.68 8.02 -2.39 -0.02 1.67 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.10 2.32 6.65 -2.38 -0.02 2.30 16 37 H 0.42 11.82 8.29 -92.71 -0.77 11.05 16 38 H 0.18 8.71 5.92 -2.91 -0.02 8.69 16 39 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 40 H 0.19 6.57 8.06 -2.91 -0.02 6.55 16 41 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.10 1.14 7.75 -2.39 -0.02 1.12 16 Total: -1.00 -74.77 362.25 2.62 -72.14 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.31 Total: 32.51 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 8.67 Total: 27.26 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -8.24 Total: -122.74 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -0.14 Total: -48.67 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -74.77 2.62 -72.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345685078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.252 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds