Wall clock time and date at job start Tue Mar 31 2020 19:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.05927 * 2 1 4 4 C 1.50770 * 109.92517 * 121.50763 * 2 1 3 5 5 O 1.21280 * 125.42412 * 299.35402 * 4 2 1 6 6 N 1.34299 * 109.15086 * 119.63186 * 4 2 1 7 7 C 1.46497 * 124.85451 * 179.76202 * 6 4 2 8 8 C 1.46229 * 110.28979 * 359.74282 * 6 4 2 9 9 N 1.46795 * 108.05747 * 359.97438 * 8 6 4 10 10 C 1.34777 * 127.03068 * 180.02562 * 9 8 6 11 11 O 1.21363 * 119.99810 * 180.02562 * 10 9 8 12 12 C 1.49342 * 120.00099 * 0.02562 * 10 9 8 13 13 O 1.21383 * 119.99611 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00103 * 180.02562 * 12 10 9 15 15 C 1.39930 * 119.99993 * 180.27738 * 14 12 10 16 16 C 1.40462 * 125.97765 * 359.43801 * 15 14 12 17 17 C 1.35215 * 107.86720 * 179.88781 * 16 15 14 18 18 N 1.34992 * 107.87523 * 0.36814 * 17 16 15 19 19 C 1.46499 * 125.97342 * 179.79640 * 18 17 16 20 20 C 1.50709 * 109.46971 * 124.98806 * 19 18 17 21 21 H 1.07997 * 119.99707 * 359.97438 * 20 19 18 22 22 C 1.37867 * 119.99789 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00605 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99775 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47270 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46989 * 119.99773 * 24 22 20 27 27 H 1.48502 * 109.47203 * 239.99786 * 24 22 20 28 28 N 1.31275 * 125.98051 * 179.74611 * 15 14 12 29 29 H 1.09002 * 109.47235 * 181.43266 * 1 2 3 30 30 H 1.08996 * 109.47072 * 301.43389 * 1 2 3 31 31 H 1.09005 * 109.47158 * 61.43236 * 1 2 3 32 32 H 1.08998 * 109.47162 * 269.97492 * 7 6 4 33 33 H 1.08995 * 109.47313 * 29.97872 * 7 6 4 34 34 H 1.08996 * 109.47060 * 149.97912 * 7 6 4 35 35 H 1.09002 * 109.75054 * 240.34373 * 8 6 4 36 36 H 1.08999 * 109.74861 * 119.65678 * 8 6 4 37 37 H 0.97001 * 119.99727 * 359.97438 * 14 12 10 38 38 H 1.07998 * 126.06980 * 0.02562 * 16 15 14 39 39 H 1.07994 * 126.06586 * 180.13483 * 17 16 15 40 40 H 1.09001 * 109.47204 * 244.98222 * 19 18 17 41 41 H 1.08994 * 109.46939 * 4.98812 * 19 18 17 42 42 H 0.97000 * 120.00400 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0438 -0.7408 1.2085 5 8 1.8279 -0.4380 2.3629 6 7 2.7836 -1.7857 0.8030 7 6 3.4526 -2.7347 1.6964 8 6 2.8256 -1.8410 -0.6576 9 7 2.0332 -0.7204 -1.1783 10 6 1.8164 -0.4116 -2.4722 11 8 1.1360 0.5511 -2.7605 12 6 2.4135 -1.2541 -3.5511 13 8 3.0936 -2.2173 -3.2626 14 7 2.1972 -0.9451 -4.8450 15 6 2.7518 -1.7379 -5.8559 16 6 3.5588 -2.8718 -5.6660 17 6 3.8887 -3.3550 -6.8851 18 7 3.3220 -2.5566 -7.8145 19 6 3.4287 -2.7165 -9.2668 20 6 2.0481 -2.7820 -9.8677 21 1 1.1784 -2.7120 -9.2313 22 6 1.8956 -2.9324 -11.2296 23 7 2.9547 -3.0182 -12.0045 24 14 0.1844 -3.0144 -11.9743 25 1 -0.8306 -2.8958 -10.8969 26 1 0.0119 -1.9013 -12.9421 27 1 0.0114 -4.3117 -12.6760 28 7 2.6137 -1.5488 -7.1476 29 1 -0.3634 -1.0274 0.0257 30 1 -0.3633 0.5359 0.8768 31 1 -0.3634 0.4914 -0.9026 32 1 4.4578 -2.3769 1.9195 33 1 2.8849 -2.8241 2.6225 34 1 3.5131 -3.7091 1.2118 35 1 2.4010 -2.7837 -1.0028 36 1 3.8567 -1.7541 -1.0000 37 1 1.6534 -0.1756 -5.0754 38 1 3.8603 -3.2857 -4.7152 39 1 4.5004 -4.2232 -7.0806 40 1 3.9679 -1.8676 -9.6872 41 1 3.9672 -3.6369 -9.4923 42 1 2.8473 -3.1237 -12.9628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345831303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:23 Heat of formation + Delta-G solvation = 18.146504 kcal Electronic energy + Delta-G solvation = -28145.469093 eV Core-core repulsion = 23936.261907 eV Total energy + Delta-G solvation = -4209.207186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.84413 -40.91276 -39.98806 -38.59558 -37.28616 -35.30028 -34.73290 -33.43383 -31.74025 -31.11435 -29.51362 -28.73124 -27.12867 -26.35337 -25.59128 -23.73422 -22.75673 -21.38424 -20.62038 -20.27954 -19.67320 -18.15296 -17.52529 -17.10865 -16.76410 -16.66520 -16.33104 -15.99789 -15.93900 -15.58431 -15.17789 -14.75884 -14.50021 -14.40073 -14.21589 -13.92047 -13.69548 -13.42942 -13.06776 -12.86137 -12.78793 -12.63807 -12.49751 -12.36980 -12.14631 -11.95917 -11.66476 -11.13521 -10.91849 -10.64714 -10.53311 -10.32930 -10.12112 -9.91768 -9.72179 -9.58812 -9.11108 -8.69807 -8.33030 -7.68196 -6.30561 -4.35924 0.94574 1.49907 1.92080 2.25123 2.50563 2.78613 2.85826 3.19107 3.27095 3.33055 3.52672 3.53438 3.60668 4.09489 4.28092 4.34348 4.54669 4.73132 4.78594 4.80169 5.00684 5.03557 5.05007 5.22724 5.30431 5.32617 5.38437 5.60674 5.67509 5.74698 5.97939 6.18425 6.30673 6.37982 6.57278 6.72035 6.94574 7.04489 7.12066 7.36992 7.48471 7.62602 7.73940 7.81228 7.89646 8.44782 8.72648 9.30392 10.78299 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025017 B = 0.002182 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.961510 B =12831.509236 C =13519.133703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.105 3.895 3 H 0.120 0.880 4 C 0.523 3.477 5 O -0.509 6.509 6 N -0.630 5.630 7 C 0.102 3.898 8 C 0.333 3.667 9 N -0.602 5.602 10 C 0.548 3.452 11 O -0.496 6.496 12 C 0.518 3.482 13 O -0.496 6.496 14 N -0.594 5.594 15 C 0.249 3.751 16 C -0.285 4.285 17 C 0.054 3.946 18 N -0.313 5.313 19 C 0.256 3.744 20 C -0.530 4.530 21 H 0.070 0.930 22 C 0.063 3.937 23 N -0.894 5.894 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 N -0.292 5.292 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.424 0.576 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 0.835 24.196 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.002 4.002 3 H 0.137 0.863 4 C 0.309 3.691 5 O -0.383 6.383 6 N -0.367 5.367 7 C -0.039 4.039 8 C 0.125 3.875 9 N -0.340 5.340 10 C 0.331 3.669 11 O -0.369 6.369 12 C 0.297 3.703 13 O -0.369 6.369 14 N -0.242 5.242 15 C -0.004 4.004 16 C -0.316 4.316 17 C -0.096 4.096 18 N -0.095 5.095 19 C 0.139 3.861 20 C -0.568 4.568 21 H 0.088 0.912 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.207 1.207 28 N -0.123 5.123 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.262 0.738 38 H 0.179 0.821 39 H 0.188 0.812 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.149 1.491 23.573 23.648 hybrid contribution -0.643 -0.277 -0.176 0.722 sum 0.505 1.214 23.397 23.434 Atomic orbital electron populations 1.21989 0.90940 1.03554 1.04758 1.21635 0.97810 0.97915 0.82810 0.86282 1.20397 0.78048 0.80921 0.89766 1.90788 1.59351 1.69068 1.19104 1.48384 1.51552 1.29584 1.07152 1.21611 0.97244 0.91629 0.93418 1.21665 0.97577 0.90461 0.77757 1.47903 1.51487 1.30038 1.04577 1.19472 0.81398 0.85051 0.81014 1.90829 1.37318 1.27516 1.81223 1.19534 0.82288 0.85412 0.83021 1.90699 1.37034 1.27098 1.82044 1.41899 1.49679 1.29808 1.02765 1.18969 0.99433 0.94148 0.87830 1.21489 1.10384 1.00767 0.98930 1.22596 1.00186 0.98043 0.88774 1.49200 1.34117 1.17745 1.08419 1.19826 0.99482 0.98873 0.67910 1.21275 0.91598 1.51443 0.92528 0.91187 1.24943 0.97886 0.94538 0.96680 1.69919 1.28956 1.49096 1.05270 0.86269 0.83374 0.77757 0.79097 1.19522 1.20636 1.20740 1.77426 1.19593 1.13211 1.02087 0.91809 0.89973 0.89584 0.91735 0.90030 0.90052 0.88622 0.88559 0.73804 0.82112 0.81185 0.93486 0.92319 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.29 37.16 0.35 -0.92 16 2 C 0.10 0.91 3.63 -68.78 -0.25 0.66 16 3 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.52 5.00 7.41 -11.17 -0.08 4.92 16 5 O -0.51 -6.35 17.67 5.56 0.10 -6.25 16 6 N -0.63 -4.75 3.33 -185.50 -0.62 -5.37 16 7 C 0.10 0.50 11.01 59.85 0.66 1.16 16 8 C 0.33 2.53 6.17 -63.72 -0.39 2.14 16 9 N -0.60 -5.53 3.10 -171.15 -0.53 -6.06 16 10 C 0.55 6.10 7.75 -11.64 -0.09 6.01 16 11 O -0.50 -6.32 15.62 5.49 0.09 -6.23 16 12 C 0.52 6.59 7.83 -11.64 -0.09 6.50 16 13 O -0.50 -6.51 11.44 5.47 0.06 -6.44 16 14 N -0.59 -8.71 5.43 -11.58 -0.06 -8.78 16 15 C 0.25 4.58 8.10 -154.55 -1.25 3.32 16 16 C -0.28 -4.94 9.60 -39.82 -0.38 -5.32 16 17 C 0.05 0.97 11.43 -17.24 -0.20 0.78 16 18 N -0.31 -6.81 3.67 -62.56 -0.23 -7.04 16 19 C 0.26 6.21 6.26 -5.19 -0.03 6.17 16 20 C -0.53 -14.26 9.24 -34.44 -0.32 -14.58 16 21 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 24 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 N -0.29 -6.35 12.42 31.41 0.39 -5.96 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.78 6.91 -51.93 -0.36 0.42 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.43 7.98 -51.93 -0.41 0.02 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.70 7.70 -51.93 -0.40 0.30 16 36 H 0.10 0.69 7.71 -51.93 -0.40 0.29 16 37 H 0.42 5.69 8.29 -40.82 -0.34 5.36 16 38 H 0.16 2.54 5.91 -52.49 -0.31 2.23 16 39 H 0.17 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -32.14 365.61 -6.91 -39.04 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.15 Total: 3.19 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -2.18 Total: 12.43 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.31 Total: -57.13 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.25 Total: -18.93 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.14 -6.91 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345831303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.188 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds