Wall clock time and date at job start Tue Mar 31 2020 19:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.05927 * 2 1 4 4 C 1.50770 * 109.92517 * 121.50763 * 2 1 3 5 5 O 1.21280 * 125.42412 * 299.35402 * 4 2 1 6 6 N 1.34299 * 109.15086 * 119.63186 * 4 2 1 7 7 C 1.46497 * 124.85451 * 179.76202 * 6 4 2 8 8 C 1.46229 * 110.28979 * 359.74282 * 6 4 2 9 9 N 1.46795 * 108.05747 * 359.97438 * 8 6 4 10 10 C 1.34777 * 127.03068 * 180.02562 * 9 8 6 11 11 O 1.21363 * 119.99810 * 180.02562 * 10 9 8 12 12 C 1.49342 * 120.00099 * 0.02562 * 10 9 8 13 13 O 1.21383 * 119.99611 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00103 * 180.02562 * 12 10 9 15 15 C 1.39930 * 119.99993 * 180.27738 * 14 12 10 16 16 C 1.40462 * 125.97765 * 359.43801 * 15 14 12 17 17 C 1.35215 * 107.86720 * 179.88781 * 16 15 14 18 18 N 1.34992 * 107.87523 * 0.36814 * 17 16 15 19 19 C 1.46499 * 125.97342 * 179.79640 * 18 17 16 20 20 C 1.50709 * 109.46971 * 124.98806 * 19 18 17 21 21 H 1.07997 * 119.99707 * 359.97438 * 20 19 18 22 22 C 1.37867 * 119.99789 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00605 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99775 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47270 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46989 * 119.99773 * 24 22 20 27 27 H 1.48502 * 109.47203 * 239.99786 * 24 22 20 28 28 N 1.31275 * 125.98051 * 179.74611 * 15 14 12 29 29 H 1.09002 * 109.47235 * 181.43266 * 1 2 3 30 30 H 1.08996 * 109.47072 * 301.43389 * 1 2 3 31 31 H 1.09005 * 109.47158 * 61.43236 * 1 2 3 32 32 H 1.08998 * 109.47162 * 269.97492 * 7 6 4 33 33 H 1.08995 * 109.47313 * 29.97872 * 7 6 4 34 34 H 1.08996 * 109.47060 * 149.97912 * 7 6 4 35 35 H 1.09002 * 109.75054 * 240.34373 * 8 6 4 36 36 H 1.08999 * 109.74861 * 119.65678 * 8 6 4 37 37 H 0.97001 * 119.99727 * 359.97438 * 14 12 10 38 38 H 1.07998 * 126.06980 * 0.02562 * 16 15 14 39 39 H 1.07994 * 126.06586 * 180.13483 * 17 16 15 40 40 H 1.09001 * 109.47204 * 244.98222 * 19 18 17 41 41 H 1.08994 * 109.46939 * 4.98812 * 19 18 17 42 42 H 0.97000 * 120.00400 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0438 -0.7408 1.2085 5 8 1.8279 -0.4380 2.3629 6 7 2.7836 -1.7857 0.8030 7 6 3.4526 -2.7347 1.6964 8 6 2.8256 -1.8410 -0.6576 9 7 2.0332 -0.7204 -1.1783 10 6 1.8164 -0.4116 -2.4722 11 8 1.1360 0.5511 -2.7605 12 6 2.4135 -1.2541 -3.5511 13 8 3.0936 -2.2173 -3.2626 14 7 2.1972 -0.9451 -4.8450 15 6 2.7518 -1.7379 -5.8559 16 6 3.5588 -2.8718 -5.6660 17 6 3.8887 -3.3550 -6.8851 18 7 3.3220 -2.5566 -7.8145 19 6 3.4287 -2.7165 -9.2668 20 6 2.0481 -2.7820 -9.8677 21 1 1.1784 -2.7120 -9.2313 22 6 1.8956 -2.9324 -11.2296 23 7 2.9547 -3.0182 -12.0045 24 14 0.1844 -3.0144 -11.9743 25 1 -0.8306 -2.8958 -10.8969 26 1 0.0119 -1.9013 -12.9421 27 1 0.0114 -4.3117 -12.6760 28 7 2.6137 -1.5488 -7.1476 29 1 -0.3634 -1.0274 0.0257 30 1 -0.3633 0.5359 0.8768 31 1 -0.3634 0.4914 -0.9026 32 1 4.4578 -2.3769 1.9195 33 1 2.8849 -2.8241 2.6225 34 1 3.5131 -3.7091 1.2118 35 1 2.4010 -2.7837 -1.0028 36 1 3.8567 -1.7541 -1.0000 37 1 1.6534 -0.1756 -5.0754 38 1 3.8603 -3.2857 -4.7152 39 1 4.5004 -4.2232 -7.0806 40 1 3.9679 -1.8676 -9.6872 41 1 3.9672 -3.6369 -9.4923 42 1 2.8473 -3.1237 -12.9628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345831303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:22 Heat of formation + Delta-G solvation = -3.840701 kcal Electronic energy + Delta-G solvation = -28146.422530 eV Core-core repulsion = 23936.261907 eV Total energy + Delta-G solvation = -4210.160623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.72811 -42.15384 -41.07173 -39.61601 -38.11350 -36.46933 -35.59442 -35.23793 -32.83045 -32.48850 -30.99516 -29.32915 -28.77435 -27.08778 -26.68979 -24.98342 -24.06992 -22.60235 -21.67829 -21.31285 -20.83774 -19.14932 -18.68702 -18.35360 -18.13605 -17.90512 -17.20234 -17.00179 -16.87392 -16.57916 -16.44974 -16.09490 -15.84772 -15.31982 -15.23900 -15.01184 -14.59163 -14.46862 -14.23594 -14.07993 -13.84429 -13.70269 -13.47816 -13.34630 -13.21626 -12.99665 -12.83038 -12.76508 -12.59465 -12.31267 -12.13379 -11.64638 -11.41958 -11.31166 -10.78146 -10.71632 -10.65492 -9.83296 -9.75340 -9.19408 -8.33135 -6.46299 -0.06312 0.53841 1.14009 1.18727 1.37554 1.40018 1.48884 1.53413 1.68697 1.74707 2.22817 2.27199 2.38236 2.89827 2.98421 2.99584 3.63333 3.86504 3.93373 4.05646 4.23634 4.25259 4.33712 4.39827 4.63051 4.64029 4.64446 4.73813 4.86157 4.88298 4.90628 4.95871 5.04285 5.07262 5.10420 5.57268 5.69486 5.72692 5.80116 5.80724 5.95164 6.25845 6.31455 6.63076 6.65804 6.77788 6.98947 7.23852 8.74785 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025017 B = 0.002182 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.961510 B =12831.509236 C =13519.133703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.104 3.896 3 H 0.127 0.873 4 C 0.522 3.478 5 O -0.542 6.542 6 N -0.624 5.624 7 C 0.096 3.904 8 C 0.331 3.669 9 N -0.595 5.595 10 C 0.558 3.442 11 O -0.513 6.513 12 C 0.526 3.474 13 O -0.494 6.494 14 N -0.597 5.597 15 C 0.259 3.741 16 C -0.282 4.282 17 C 0.059 3.941 18 N -0.340 5.340 19 C 0.271 3.729 20 C -0.546 4.546 21 H 0.052 0.948 22 C 0.019 3.981 23 N -0.920 5.920 24 Si 0.969 3.031 25 H -0.275 1.275 26 H -0.275 1.275 27 H -0.270 1.270 28 N -0.342 5.342 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.429 0.571 38 H 0.182 0.818 39 H 0.206 0.794 40 H 0.022 0.978 41 H 0.063 0.937 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -0.171 25.467 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.002 4.002 3 H 0.144 0.856 4 C 0.309 3.691 5 O -0.419 6.419 6 N -0.359 5.359 7 C -0.044 4.044 8 C 0.123 3.877 9 N -0.332 5.332 10 C 0.340 3.660 11 O -0.388 6.388 12 C 0.306 3.694 13 O -0.366 6.366 14 N -0.246 5.246 15 C 0.005 3.995 16 C -0.313 4.313 17 C -0.090 4.090 18 N -0.123 5.123 19 C 0.152 3.848 20 C -0.584 4.584 21 H 0.070 0.930 22 C -0.181 4.181 23 N -0.558 5.558 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.201 1.201 27 H -0.195 1.195 28 N -0.173 5.173 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.267 0.733 38 H 0.199 0.801 39 H 0.223 0.777 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.234 0.451 24.886 24.921 hybrid contribution -0.598 0.011 -0.392 0.715 sum 0.636 0.462 24.494 24.507 Atomic orbital electron populations 1.21934 0.90518 1.03600 1.04649 1.21709 0.98155 0.98164 0.82183 0.85573 1.20418 0.78116 0.81293 0.89313 1.90774 1.60804 1.70073 1.20266 1.48507 1.50762 1.29222 1.07367 1.21851 0.97335 0.92197 0.93042 1.21853 0.97954 0.90158 0.77698 1.47839 1.50985 1.30325 1.04070 1.18967 0.81293 0.84582 0.81148 1.90837 1.38227 1.28190 1.81510 1.19763 0.81722 0.85310 0.82599 1.90678 1.36810 1.27104 1.82039 1.41987 1.50055 1.29851 1.02750 1.19271 0.98340 0.94263 0.87609 1.21765 1.09841 1.00227 0.99454 1.23276 0.99313 0.98196 0.88174 1.48903 1.36195 1.19303 1.07872 1.19377 0.97868 0.97815 0.69707 1.21426 0.92304 1.51777 0.92902 0.92957 1.25698 1.01399 0.94053 0.96989 1.69988 1.30644 1.49529 1.05686 0.85338 0.78955 0.78253 0.78100 1.19960 1.20062 1.19506 1.77333 1.21649 1.14569 1.03771 0.91734 0.89279 0.90391 0.90679 0.90539 0.87685 0.87629 0.87456 0.73294 0.80081 0.77726 0.95975 0.91923 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.29 71.98 0.67 -1.59 16 2 C 0.10 1.65 3.63 44.17 0.16 1.81 16 3 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.52 9.24 7.41 87.75 0.65 9.89 16 5 O -0.54 -13.09 17.67 -3.03 -0.05 -13.14 16 6 N -0.62 -8.01 3.33 -859.45 -2.86 -10.87 16 7 C 0.10 0.71 11.01 127.77 1.41 2.12 16 8 C 0.33 4.13 6.17 170.95 1.05 5.18 16 9 N -0.60 -9.74 3.10 -813.76 -2.52 -12.27 16 10 C 0.56 11.49 7.75 87.24 0.68 12.16 16 11 O -0.51 -12.50 15.62 -3.29 -0.05 -12.56 16 12 C 0.53 12.39 7.83 87.24 0.68 13.07 16 13 O -0.49 -11.60 11.44 -3.35 -0.04 -11.64 16 14 N -0.60 -16.95 5.43 -308.90 -1.68 -18.63 16 15 C 0.26 9.34 8.10 133.40 1.08 10.42 16 16 C -0.28 -9.26 9.60 22.11 0.21 -9.05 16 17 C 0.06 2.03 11.43 83.51 0.95 2.99 16 18 N -0.34 -14.91 3.67 -351.84 -1.29 -16.21 16 19 C 0.27 13.41 6.26 85.64 0.54 13.95 16 20 C -0.55 -29.90 9.24 25.60 0.24 -29.66 16 21 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 22 C 0.02 1.03 5.46 84.65 0.46 1.49 16 23 N -0.92 -50.95 13.29 21.44 0.28 -50.67 16 24 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 N -0.34 -15.05 12.42 -54.53 -0.68 -15.73 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.34 6.91 -2.38 -0.02 1.32 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.69 7.98 -2.39 -0.02 0.67 16 34 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.11 1.20 7.70 -2.39 -0.02 1.18 16 36 H 0.11 1.19 7.71 -2.39 -0.02 1.17 16 37 H 0.43 11.36 8.29 -92.71 -0.77 10.59 16 38 H 0.18 5.15 5.91 -2.91 -0.02 5.13 16 39 H 0.21 5.32 8.06 -2.91 -0.02 5.30 16 40 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 42 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -69.10 365.61 2.23 -66.87 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.31 Total: 17.14 kcal Atomic # 6 Polarization: 24.00 SS G_CDS: 8.78 Total: 32.79 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -8.75 Total: -124.37 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.14 Total: -37.34 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.10 2.23 -66.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345831303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.028 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds